mRNA_D-herbacea_F_contig106.641.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.641.1
Unique NamemRNA_D-herbacea_F_contig106.641.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Match: A0A6H5K9R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R7_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 9.600e-122
Identity = 215/362 (59.39%), Postives = 255/362 (70.44%), Query Frame = 2 
Query:   92 VVVELLVANGFVQQSSARLVRTRQARKATATILGASRMCSSSSPTAVGIDVPPVVSATSADTQRADADKDNDLLLPFRHSSPVYIEMTDMYGIVYYANYLTYAQRAIEHTFGGTAPRVHCLHDMKYRAAATLGEKVMVEGNLLSCD---SINGCSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPPGLSA---PREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGKLSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVTSISHLRVCADDVAVGDKLEVRLGAKLSRGNRLMTMYETLWRENGALVAHAEIALFCMDSVTHKFRSVPQWVQDVLTVPSA 1159
            +V  LL A+GFV+Q      RT      T    G +   +S+ PT +   +    S+T+A    A  DK       FRH S VYIEMTDMY IVY+ANY+TYAQRAIEH FG    RVH L  +KYRAAATLG+++ V+G L+SCD   S  G SRWRF +A+    SRVFV+ EAT+SWPG   +PPG++    PR AE   S  DT+LLQPLP  F D PK L VVVWSDDL+  VGG LS RAVLNYFERIRTLSLGRG DGELGL+RLHREGVS+VVTSIS LRV +D +  G+ L+VRLGAKLSRGNR+MTMYE+LW+ENG LVAHAEIALFCMD+ T KFR VP+WVQ  + +PSA
Sbjct:   11 MVCYLLPAHGFVRQRFR--TRTGPEGHRTGYGRGGTSTATSTRPTTI---IACAASSTTAVDSSAVEDKHMSCS-SFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGDEIAVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWPGGAAMPPGVAVIKLPRSAEPTMSD-DTELLQPLPEAFTDPPKALKVVVWSDDLD--VGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWKENGTLVAHAEIALFCMDNETRKFRPVPEWVQVAIMLPSA 363
[Close]
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Match: D8LB89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB89_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 4.210e-118
Identity = 188/276 (68.12%), Postives = 217/276 (78.62%), Query Frame = 2 
Query:  350 MTDMYGIVYYANYLTYAQRAIEHTFGGTAPRVHCLHDMKYRAAATLGEKVMVEGNLLSCD---SINGCSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPPGLSA---PREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGKLSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVTSISHLRVCADDVAVGDKLEVRLGAKLSRGNRLMTMYETLWRENGALVAHAEIALFCMDSVTHKFRSVPQWVQDVLTVPSA 1159
            MTDMY IVY+ANY+TYAQRAIEH FG    RVH L  +KYRAAATLGE++ V+G L+SCD   S  G SRWRF +A+    SRVFV+ EAT+SW G   +PPG++    PR AE      DT+LLQPLP  F DSPKTL VVVWSDDL+GG  G LS RAVLNYFERIRTLSLGRG DGELGL+RLHREGVS+VVTSIS LRV +D +  G+ L+VRLGAKLSRGNR+MTMYE+LWRENG LVAHAEIALFCMD+ T KFR VP+WVQ+ + +PSA
Sbjct:    1 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGEEITVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWLGGAAMPPGVAVSKLPRSAEP-TMTDDTELLQPLPEAFTDSPKTLKVVVWSDDLDGG--GNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSA 273
[Close]
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Match: A0A7S0LRK8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRK8_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-14
Identity = 87/302 (28.81%), Postives = 123/302 (40.73%), Query Frame = 2 
Query:  338 VYIEMTDMYGIVYYANYLTYAQRAIEHTFG-----------GTAPRVHCLHDMKYRAAATLGEKVMVEGNLLSCDSING------------------CSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPPGLSAPREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGKLSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVT---SISHLRVCADDVAVGDKLEVRLGAKLS-RGNRLMTMYETLWRENGALVAHAEIALFCMDSVTHKFRSVPQWVQDVL 1144
            V+IE TD YGIVY+ANY  + +RA     G           G    +  +H MK+  AA LG+ + V   +L  D+                     C R  F  A+     RV   GE T  WP   M P           G           LP   ADS  T   V+     E    G++S  A L YFER R+ +LG GP     L  L  +GV +VV    ++   R  A +V++GD L VR    L  R  +++     +    G  VAHAE+    ++ +  +  + P W+ + L
Sbjct:   33 VFIEDTDAYGIVYFANYARWFERAAHSLLGSSQCAHLFRKSGLLLGIDSIHAMKFGTAAILGDDITVRSTVLGVDAHESLHLQIQLVRPADETILITCPRATFSFAT-----RV---GEPT-PWPAERMFPADFDCEIATPTGK----------LPDLDADSASTSTQVLRLQADECNAHGRISMHAALRYFERQRSTALG-GPSVLAAL--LQSDGVQVVVARMPTVEMFRPAAREVSLGDVLSVRSTCTLKVRRTQVLFDQWVVCARTGRPVAHAEVLCAFVNPMRQRLVAAPAWLDEQL 312
[Close]
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Match: A4RTW4_OSTLU (4HBT domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTW4_OSTLU)

HSP 1 Score: 71.6 bits (174), Expect = 4.380e-10
Identity = 72/295 (24.41%), Postives = 117/295 (39.66%), Query Frame = 2 
Query:  338 VYIEMTDMYGIVYYANYLTYAQRAIEHTFG----------------------GTAPRVHCLHDMKYRAAATLGEKVMVEGNLLSCDSINGCSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPPGLSAPREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGKLSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVTSISHLRVCAD------DVAVGDKLEVRLGAKLSRGNRLMTMYETLWRENGALVAHAEIALFCMDSVTHKFRSVPQWVQD 1138
            VYIE TD YG+V+YANY  +A  A E   G                      G A R   +   KY  AATLG+ + V   ++  D  +   R     A++D    VF+S E T +  GA              +GD+  D     P          T  V ++  +        +    +L +FER RT ++G    G   L  L  +GV +VV+ +       D        +V    +V+   +L R    +  ++ ++ ++GA V + ++   C+D+ T +    P  + D
Sbjct:   13 VYIEHTDAYGVVFYANYFAFASNAAE-ALGRVAAGXXXXXXXXXANAGGFDFGRAFRCARIEHCKYARAATLGDAIAVRSEVVRADERSATLRQEIVSANDDADETVFLSAEITYAGAGA-------ETDDSVGVGDTAGDETFAAPWEMEDGRCASTA-VRMYRGERSAAQRSHVD---ILRFFERARTDAIG----GSDALSALQDDGVVVVVSRLQAYFPRGDGSQSKSSSSVIPVYDVKSTVELKRRGIQVVFHQAMFADDGACVGYGDVTCTCLDAKTMRPMPCPPALVD 291
[Close]
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Match: A0A7S2VXR1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2VXR1_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-8
Identity = 63/219 (28.77%), Postives = 94/219 (42.92%), Query Frame = 2 
Query:  320 FRHSSP--VYIEMTDMYGIVYYANYLTYAQRAIEHTF------------GGTAP----RVHCLHDMKYRAAATLGEKVMVEGNLLSCDSINGCSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPPGLSAPREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGKLSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVTS 922
            F  S+P  VYIE TD YG+VYYANY  +  RA +  F            G +A      +  + ++KY   A LG++V+V   ++  D+       R      D    +++S + T + P                   +RA T  +    A  A S  T  V+V+ D+  GGVGG  S   V+ +FER R+ ++G    G   L  L  +   I V S
Sbjct:   49 FVESTPMKVYIEDTDAYGVVYYANYFRFTDRAAQEAFECALEQGRGWFEGASASFRELSLVSISNVKYARGAVLGDEVIVRTTIMDADA----HHVRLMQDVIDKHGGLYLSAQTTYARPDG-----------------ARAATTGIGAAQASTAPSWSTTRVMVYRDEQSGGVGGGCSHVDVMRFFERGRSDAIG----GSAALAELKSKHNVIAVVS 242
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9R7_9PHAE9.600e-12259.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB89_ECTSI4.210e-11868.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0LRK8_9EUKA2.380e-1428.81Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A4RTW4_OSTLU4.380e-1024.414HBT domain-containing protein n=1 Tax=Ostreococcu... [more]
A0A7S2VXR1_9CHLO1.620e-828.77Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:902199..905258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1e-10
Seed eggNOG ortholog227086.JGI_V11_78812
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CZXS@1,2SC25@2759
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-27_004780.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1538
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.641.1prot_D-herbacea_F_contig106.641.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 902563..905212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.393265-UTR-D-herbacea_F_contig106:902198..9025621622927474.393265-UTR-D-herbacea_F_contig106:902198..902562Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 902199..902562 -
1690790190.6919355-UTR-D-herbacea_F_contig106:902198..9025621690790190.6919355-UTR-D-herbacea_F_contig106:902198..902562Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 902199..902562 -
1622927474.5007117-UTR-D-herbacea_F_contig106:905212..9052581622927474.5007117-UTR-D-herbacea_F_contig106:905212..905258Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 905213..905258 -
1690790190.7480688-UTR-D-herbacea_F_contig106:905212..9052581690790190.7480688-UTR-D-herbacea_F_contig106:905212..905258Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 905213..905258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.4039645-CDS-D-herbacea_F_contig106:902562..9028231622927474.4039645-CDS-D-herbacea_F_contig106:902562..902823Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 902563..902823 -
1690790190.707686-CDS-D-herbacea_F_contig106:902562..9028231690790190.707686-CDS-D-herbacea_F_contig106:902562..902823Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 902563..902823 -
1622927474.4133234-CDS-D-herbacea_F_contig106:903911..9044641622927474.4133234-CDS-D-herbacea_F_contig106:903911..904464Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 903912..904464 -
1690790190.7267675-CDS-D-herbacea_F_contig106:903911..9044641690790190.7267675-CDS-D-herbacea_F_contig106:903911..904464Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 903912..904464 -
1622927474.423315-CDS-D-herbacea_F_contig106:904898..9052121622927474.423315-CDS-D-herbacea_F_contig106:904898..905212Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 904899..905212 -
1690790190.7380865-CDS-D-herbacea_F_contig106:904898..9052121690790190.7380865-CDS-D-herbacea_F_contig106:904898..905212Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 904899..905212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.641.1

>prot_D-herbacea_F_contig106.641.1 ID=prot_D-herbacea_F_contig106.641.1|Name=mRNA_D-herbacea_F_contig106.641.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=376bp
MHMRQYRCSHAIFLCVVVELLVANGFVQQSSARLVRTRQARKATATILGA
SRMCSSSSPTAVGIDVPPVVSATSADTQRADADKDNDLLLPFRHSSPVYI
EMTDMYGIVYYANYLTYAQRAIEHTFGGTAPRVHCLHDMKYRAAATLGEK
VMVEGNLLSCDSINGCSRWRFHIASEDLRSRVFVSGEATLSWPGAGMLPP
GLSAPREAELGDSRADTQLLQPLPAGFADSPKTLDVVVWSDDLEGGVGGK
LSTRAVLNYFERIRTLSLGRGPDGELGLVRLHREGVSIVVTSISHLRVCA
DDVAVGDKLEVRLGAKLSRGNRLMTMYETLWRENGALVAHAEIALFCMDS
VTHKFRSVPQWVQDVLTVPSAATAD*
back to top

mRNA from alignment at D-herbacea_F_contig106:902199..905258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.641.1 ID=mRNA_D-herbacea_F_contig106.641.1|Name=mRNA_D-herbacea_F_contig106.641.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3060bp|location=Sequence derived from alignment at D-herbacea_F_contig106:902199..905258- (Desmarestia herbacea DmunF female)
CGTACTACTACTGTTGTTGTGTAGCACTGCCAAGCATCGCACAGGCATGC
ATATGAGGCAGTACCGGTGTTCCCACGCTATTTTTCTGTGTGTGGTTGTC
GAGTTACTGGTGGCCAATGGATTCGTGCAGCAAAGCTCTGCGAGACTCGT
GAGGACGAGGCAAGCTAGGAAGGCAACTGCTACTATTCTTGGCGCAAGTA
GAATGTGTTCCTCATCGTCCCCAACAGCGGTGGGTATCGACGTTCCGCCT
GTAGTTTCGGCAACCTCAGCGGACACTCAGCGAGCTGACGCGGACAAGGA
CAATGATTTGTTGCTGCCATTCCGTCATAGCAGCCCGGTGTACATCGAGA
TGACTGATATGTGAGCGTGTTCCTATCATTAGAACATAAGAGGATGTGCA
TTTGGAACAAACAAAATTTGTACTTCGTATCAATATGTCAACGAGTGCTC
GCACCGTGTGCCAGAGTAGTGTGATCACATCCACCATATTGTAGTGTGGC
AGCCACACTATAGTGGATGTGATCGCTACAGATAGGTGTAAGTATTGGCA
GTGCTCGTCCTACAACAGTAAGATGTAGTCGCATTGTACAACACGTTGTA
TCAGTATCATACGAGTAGTGCAGCGGGTAACTTCATGAGAGATGTTGACA
GCCGCTTTTATGTCCCTGCATGCGTTTGAGTTTTCCGTTATTACCAACAG
GCGAAACCATAAACTGTAAACTCGTACTGCAACTCTTATCACGCTTGCTT
GCCTTCCCAACCATGCTTATTTATTCTTTATTCCTCGTGTCAAGGTACGG
TATCGTTTACTACGCCAACTACCTCACCTACGCCCAACGAGCGATCGAGC
ACACCTTCGGCGGAACGGCCCCCCGCGTCCACTGCCTGCACGACATGAAG
TACCGAGCGGCGGCCACGCTCGGCGAGAAGGTGATGGTGGAGGGAAACCT
GCTTTCCTGCGACTCCATCAACGGGTGCTCTCGCTGGCGGTTCCATATTG
CTTCCGAAGACCTCAGAAGTAGAGTTTTTGTTAGCGGCGAGGCTACGCTG
TCGTGGCCGGGGGCAGGGATGCTGCCTCCGGGGCTTAGCGCCCCTCGAGA
GGCTGAGTTGGGCGACTCGCGCGCCGACACGCAATTGCTGCAGCCGTTGC
CTGCAGGATTTGCCGATTCGCCCAAGACGTTAGATGTGGTAGTGTGGAGC
GATGATTTGGAAGGGGGTGTCGGCGGCAAGCTTTCAACTCGCGCGGTTCT
GAACTATTTCGAGCGGATACGGACGTTGAGCCTGGGCCGAGGACCGGACG
GAGAATTGGGGCTGGTGCGACTACACCGCGAAGGGGTTTCTATTGTGGTG
AGAGAAGGGCTTGCTTTGTTTACTCATCGTCTCGTGCCGCTACAGAGTTA
TTAATGGTCTATGTATAGTGCTGTGCTTATACATTCATTTAGTCTCGTCA
AGATGCCTCTTTTTCTGCTCGATATTTCGTAGCTTTTTCTTATGCATGGA
ACGCCATACGAGTCGGAGCTTTTATTTCTGTCGCATAAATAAGCGGTCCT
CATGTGCTTGACTCACTTCTTGGATTGCTTATTATTAATAGTGTTGCCCA
TTCACTTGAAAGAGGCCGAGAAGGCCCTAAGTAGCAGGAACGGGAAGGGG
GGGGGGAGGGGGCAACGCGGCAACTTGTATCTTCATTTTTACTTTTTTGT
TTGGGTTCCCTTCTTTCTTGTCCTTGTGTCCCTCTGTTCTACCTGTTTTT
TCTTTTTTTCTCTCCTCGGGTTCCTTGCGTTCCTGCCTGTTTTTCCTTGT
TTTATTGTCTGTTTTCTGTTTTTTCTTTTTTCTCGTGTTGCAATTTGGTG
CTATTATGTGTAGCTTGTGACCACGGAATCTCGTATCTCTCTAGGATGGA
AGAATCAATACAGATTCTTGAATGAGCTACTGAAATGTCGTAGGGTAGAA
AGGACGACTTTTTAATGTGAAGACAACACACACATTGGTATCAGGCGTTG
GACGAAAACGACTACTCGTAGGCGCACCCAATTGATAGCCACCCGCAGCG
TTGGGCAGGGAGTTTTATCGTGCTACACTGACTACGAGTATTTCGCCTTC
CTCGAGCCAATTTACTTGAGAGATACCAGAGGATGTTCACATTTATCAAA
AATGTTGACAGTCACTCCCATCACACACTGCGTTAACCTCCACCTAAGAC
CTGTAAACTGTGTGTTGGTCCTCATAGAATGATACTTTTTTTTTGCAGGT
TGAAAACGAAGATAGCATTTGGGTAAAATCGTTTTGGGTGACTACTGTAG
ACTAAATATGGGACATTTTTAACGTGCCAAATTCAACCTCCATAAGAAAC
GCCCTTAATTTGCTTTGTTGTTTCGCTTTCGTTGCTGTCTCACGATTGTG
TCGGTCGATTTCGTTTTCGCCCCCGCTTCCACCAGGTAACCAGCATATCC
CACCTCCGCGTGTGCGCCGACGACGTGGCGGTGGGCGACAAGCTGGAGGT
GCGGTTAGGGGCCAAGCTCTCAAGAGGCAACAGACTCATGACGATGTACG
AGACACTGTGGAGAGAGAACGGGGCGCTCGTTGCGCACGCCGAGATCGCG
CTGTTCTGCATGGATAGCGTCACTCACAAGTTTCGATCTGTGCCGCAGTG
GGTGCAAGACGTATTGACGGTTCCCTCGGCAGCCACGGCAGATTGAAATA
GCCGACGATGCCAATGTGCTACTACTACTGTATCATATTAATATGTTTAT
TGAGCGACATGGCGTGTAAAATACGATAACATTTGTGTTCGGAGTATTAG
TAGTTTTGGCGGGGAGTGAGTGGGTGGAACATGATCGTATCCACGCAGGT
CCATTCTCTAGAAGGGAAACATGAAACTATACACTGTTCCCCATGAATTC
TGAGAAGGTCATCTTCTACGGAAGAGAGGTAACTAACCTGCATGGTCCTC
TATACATGACGGTCATTCAGTGTGCCCGAAAAATTTCTGCCATACGTTAC
GGAGTTTTGGCATAATACGCTCTCCATAAAAAAAGGTTGCAAAAAACTTG
GGAAACCCGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig106:902199..905258-

>mRNA_D-herbacea_F_contig106.641.1 ID=mRNA_D-herbacea_F_contig106.641.1|Name=mRNA_D-herbacea_F_contig106.641.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2256bp|location=Sequence derived from alignment at D-herbacea_F_contig106:902199..905258- (Desmarestia herbacea DmunF female)
ATGCATATGAGGCAGTACCGGTGTTCCCACGCTATTTTTCTGTGTGTGGT
TGTCGAGTTACTGGTGGCCAATGGATTCGTGCAGCAAAGCTCTGCGAGAC
TCGTGAGGACGAGGCAAGCTAGGAAGGCAACTGCTACTATTCTTGGCGCA
AGTAGAATGTGTTCCTCATCGTCCCCAACAGCGGTGGGTATCGACGTTCC
GCCTGTAGTTTCGGCAACCTCAGCGGACACTCAGCGAGCTGACGCGGACA
AGGACAATGATTTGTTGCTGCCATTCCGTCATAGCAGCCCGGTGTACATC
GAGATGACTGATATATGCATATGAGGCAGTACCGGTGTTCCCACGCTATT
TTTCTGTGTGTGGTTGTCGAGTTACTGGTGGCCAATGGATTCGTGCAGCA
AAGCTCTGCGAGACTCGTGAGGACGAGGCAAGCTAGGAAGGCAACTGCTA
CTATTCTTGGCGCAAGTAGAATGTGTTCCTCATCGTCCCCAACAGCGGTG
GGTATCGACGTTCCGCCTGTAGTTTCGGCAACCTCAGCGGACACTCAGCG
AGCTGACGCGGACAAGGACAATGATTTGTTGCTGCCATTCCGTCATAGCA
GCCCGGTGTACATCGAGATGACTGATATGTACGGTATCGTTTACTACGCC
AACTACCTCACCTACGCCCAACGAGCGATCGAGCACACCTTCGGCGGAAC
GGCCCCCCGCGTCCACTGCCTGCACGACATGAAGTACCGAGCGGCGGCCA
CGCTCGGCGAGAAGGTGATGGTGGAGGGAAACCTGCTTTCCTGCGACTCC
ATCAACGGGTGCTCTCGCTGGCGGTTCCATATTGCTTCCGAAGACCTCAG
AAGTAGAGTTTTTGTTAGCGGCGAGGCTACGCTGTCGTGGCCGGGGGCAG
GGATGCTGCCTCCGGGGCTTAGCGCCCCTCGAGAGGCTGAGTTGGGCGAC
TCGCGCGCCGACACGCAATTGCTGCAGCCGTTGCCTGCAGGATTTGCCGA
TTCGCCCAAGACGTTAGATGTGGTAGTGTGGAGCGATGATTTGGAAGGGG
GTGTCGGCGGCAAGCTTTCAACTCGCGCGGTTCTGAACTATTTCGAGCGG
ATACGGACGTTGAGCCTGGGCCGAGGACCGGACGGAGAATTGGGGCTGGT
GCGACTACACCGCGAAGGGGTTTCTATTGTGGTACGGTATCGTTTACTAC
GCCAACTACCTCACCTACGCCCAACGAGCGATCGAGCACACCTTCGGCGG
AACGGCCCCCCGCGTCCACTGCCTGCACGACATGAAGTACCGAGCGGCGG
CCACGCTCGGCGAGAAGGTGATGGTGGAGGGAAACCTGCTTTCCTGCGAC
TCCATCAACGGGTGCTCTCGCTGGCGGTTCCATATTGCTTCCGAAGACCT
CAGAAGTAGAGTTTTTGTTAGCGGCGAGGCTACGCTGTCGTGGCCGGGGG
CAGGGATGCTGCCTCCGGGGCTTAGCGCCCCTCGAGAGGCTGAGTTGGGC
GACTCGCGCGCCGACACGCAATTGCTGCAGCCGTTGCCTGCAGGATTTGC
CGATTCGCCCAAGACGTTAGATGTGGTAGTGTGGAGCGATGATTTGGAAG
GGGGTGTCGGCGGCAAGCTTTCAACTCGCGCGGTTCTGAACTATTTCGAG
CGGATACGGACGTTGAGCCTGGGCCGAGGACCGGACGGAGAATTGGGGCT
GGTGCGACTACACCGCGAAGGGGTTTCTATTGTGGTAACCAGCATATCCC
ACCTCCGCGTGTGCGCCGACGACGTGGCGGTGGGCGACAAGCTGGAGGTG
CGGTTAGGGGCCAAGCTCTCAAGAGGCAACAGACTCATGACGATGTACGA
GACACTGTGGAGAGAGAACGGGGCGCTCGTTGCGCACGCCGAGATCGCGC
TGTTCTGCATGGATAGCGTCACTCACAAGTTTCGATCTGTGCCGCAGTGG
GTGCAAGACGTATTGACGGTTCCCTCGGCAGCCACGGCAGATTGAGTAAC
CAGCATATCCCACCTCCGCGTGTGCGCCGACGACGTGGCGGTGGGCGACA
AGCTGGAGGTGCGGTTAGGGGCCAAGCTCTCAAGAGGCAACAGACTCATG
ACGATGTACGAGACACTGTGGAGAGAGAACGGGGCGCTCGTTGCGCACGC
CGAGATCGCGCTGTTCTGCATGGATAGCGTCACTCACAAGTTTCGATCTG
TGCCGCAGTGGGTGCAAGACGTATTGACGGTTCCCTCGGCAGCCACGGCA
GATTGA
back to top