mRNA_D-herbacea_F_contig106.628.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI) HSP 1 Score: 489 bits (1258), Expect = 3.210e-166 Identity = 244/277 (88.09%), Postives = 260/277 (93.86%), Query Frame = 1
Query: 82 MAKATTFVMVGASCAGLSQAFVAPMTTVAGAASVRQASSLSMAADNAYHKKDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
MA+A FV +C G SQAFV P TV+GA++ +SSL+MAA+NAYHKKDFWIAPSILSADMAKLG+EVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFA+AGASFITFHPEASPHVDRTL LIKS+GCKAGLVFNPATPLDHAKYVLDK+DIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCG+ANIKEIAEAGADMFVAGSAIFNNPRTE+NYKETIDKMR+ELA A +
Sbjct: 1 MARAGAFVAF--ACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 275
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA) HSP 1 Score: 404 bits (1039), Expect = 2.830e-133 Identity = 201/243 (82.72%), Postives = 222/243 (91.36%), Query Frame = 1
Query: 184 RQASSLSMAADNAYHKKDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
R SSL MA +NA+H+KDF IAPSILSADMAKLGEEVDNAM+AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV N IDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLIKS GCK+GLVFNPATPLD AKYVLDK+DIILLMSVNPGFGGQ+FIP+TLDKLREAR MIDESG+DIRLE+DGG NIKEIAEAGADMFVAGSA+F NPRT + Y +TI K+R ELA+A++
Sbjct: 27 RPTSSLRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA) HSP 1 Score: 393 bits (1009), Expect = 6.470e-129 Identity = 190/227 (83.70%), Postives = 206/227 (90.75%), Query Frame = 1
Query: 229 KKDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAK 909
KKDFWIAPSILSAD AKLG+EVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFADAGASFITFHPEA+ H+DRTLQLIKS GCK+GLVFNPATPL A++VLDK+DIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG G+ANIK+IAEAGAD FVAGSAI NPRT+D YK TID MR ELA +
Sbjct: 40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN) HSP 1 Score: 386 bits (992), Expect = 3.250e-126 Identity = 188/227 (82.82%), Postives = 206/227 (90.75%), Query Frame = 1
Query: 232 KDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
KDF IAPSILSAD A+LGEEV N++SAGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIVGDFADAGAS+ITFHPEASPHVDRTLQLI+ GCKAGLVFNPATPLD KYV+DK+DIILLMSVNPGFGGQSFIP+TLDK REARK+ID SGYDIRLE+DGG ANIKE+AEAG DMFVAGSAIF +PRTE++YK TID MR ELA+AK+
Sbjct: 43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA) HSP 1 Score: 384 bits (987), Expect = 1.760e-125 Identity = 187/228 (82.02%), Postives = 207/228 (90.79%), Query Frame = 1
Query: 229 KKDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
+KDF IAPSILSAD AKLG EVD +++AGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIV DFADAGAS+ITFHPEASPHVDRTLQLI+S GCK+GLVFNPATPLD KYV+DK+DIILLMSVNPGFGGQ+FIP+TLDK REARKMIDESGYDIRLE+DGG ANIKE+AEAG DMFVAGSAIF +PRTE+ YK+TID MR ELA+AK+
Sbjct: 41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC) HSP 1 Score: 367 bits (943), Expect = 7.210e-119 Identity = 174/227 (76.65%), Postives = 198/227 (87.22%), Query Frame = 1
Query: 232 KDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
KD+ IAPSILSAD AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF DAGAS+ITFHPEAS H+DRTL +I+ GCKAGLV NPAT LD+ KYV+DKIDIILLMSVNPGFGGQ FIPS L+K +EARK+ID SGYDIRLE+DGG + NIK++AE G DMFVAGSAI PRT+D YK TIDKMR +LASAK+
Sbjct: 49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKV 275
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA) HSP 1 Score: 366 bits (939), Expect = 2.960e-118 Identity = 188/278 (67.63%), Postives = 219/278 (78.78%), Query Frame = 1
Query: 70 YTTMMAKATTFVMVGASCAGLSQAFVAPMTTVAGAASVRQASSLSMAADNAYHKKDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELAS 903
Y+ + F++V SC F+ P T G + SSL M AD + KD+ IAPSILSA+ AKLGEEVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFADAGA +ITFHPEAS H+DR+L LIKS GCK+GLVFNPAT LD+AKYVLDK+DIILLMSVNPGFGGQSFIP DK+++ARKMIDESGYDI+LE+DGG + NIK+IAEAG DMFVAGSAI PR +D Y ETI MR +LA+
Sbjct: 2 YSASLKAIVLFLLVAVSCG-----FLTPQTLGLGTRVSK--SSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLAT 269
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP) HSP 1 Score: 365 bits (936), Expect = 3.980e-118 Identity = 173/226 (76.55%), Postives = 200/226 (88.50%), Query Frame = 1
Query: 232 KDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAK 909
KDF IAPSILSA+ AKLGEEVDN ++AGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF DAGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DK+DIILLMSVNPGFGGQ FIP+ LDK REARKMIDESG+DIRLE+DGG + NIK++AEAG D FVAGSAI PRT+D Y+ TI++MRT LA+AK
Sbjct: 25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAAK 250
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A7S0LBR0_9EUKA (Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBR0_9EUKA) HSP 1 Score: 363 bits (931), Expect = 2.560e-117 Identity = 175/223 (78.48%), Postives = 199/223 (89.24%), Query Frame = 1
Query: 235 DFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELAS 903
++ IAPSILSAD AKLGEEVD ++AGAD VHFDVMDNHYVPNLTIGPLVCK LR+HG+T PIDVHLMVSPVDRI+GDFADAGAS+ITFHPEA+ H+DR+LQL+++ GCK+GLVFNPAT LD KYV+DK+DI+LLMSVNPGFGGQSFIP+TLDKLREAR MIDESG+DI LE+DGG G ANI E+A AGADMFVAGSAIFN P +YKETIDKMR ELA+
Sbjct: 32 EYLIAPSILSADFAKLGEEVDTVLAAGADTVHFDVMDNHYVPNLTIGPLVCKALRNHGITAPIDVHLMVSPVDRIIGDFADAGASYITFHPEATTHIDRSLQLVRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQSFIPATLDKLREARAMIDESGFDISLEIDGGVGPANIAEVAAAGADMFVAGSAIFNTP----DYKETIDKMRAELAT 250
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA) HSP 1 Score: 363 bits (931), Expect = 2.740e-117 Identity = 175/227 (77.09%), Postives = 198/227 (87.22%), Query Frame = 1
Query: 232 KDFWIAPSILSADMAKLGEEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGIANIKEIAEAGADMFVAGSAIFNNPRTEDNYKETIDKMRTELASAKL 912
KD+ IAPSILSAD AKLGEEVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD +GDF DAGAS+ITFHPEA+ HVDR+LQLIK+ GCKAGLVFNPAT LD A+YV+DK+DIILLMSVNPGFGGQ+FIP+TLDK R ARKMIDE+G D RLE+DGG + NIKE+ EAG DMFVAGSAI PRT + YK TID+MR ELA+A++
Sbjct: 37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAGLVFNPATSLDIAEYVMDKLDIILLMSVNPGFGGQAFIPATLDKARLARKMIDEAGVDCRLEIDGGVKVDNIKEVCEAGVDMFVAGSAILKEPRTVEAYKATIDEMRKELAAAEM 263 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig106.628.1 >prot_D-herbacea_F_contig106.628.1 ID=prot_D-herbacea_F_contig106.628.1|Name=mRNA_D-herbacea_F_contig106.628.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=280bp MMAKATTFVMVGASCAGLSQAFVAPMTTVAGAASVRQASSLSMAADNAYHback to top mRNA from alignment at D-herbacea_F_contig106:564725..572762+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig106.628.1 ID=mRNA_D-herbacea_F_contig106.628.1|Name=mRNA_D-herbacea_F_contig106.628.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=8038bp|location=Sequence derived from alignment at D-herbacea_F_contig106:564725..572762+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig106:564725..572762+ >mRNA_D-herbacea_F_contig106.628.1 ID=mRNA_D-herbacea_F_contig106.628.1|Name=mRNA_D-herbacea_F_contig106.628.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1680bp|location=Sequence derived from alignment at D-herbacea_F_contig106:564725..572762+ (Desmarestia herbacea DmunF female)back to top |