mRNA_D-herbacea_F_contig106.616.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.616.1
Unique NamemRNA_D-herbacea_F_contig106.616.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:267464..267882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.340047-CDS-D-herbacea_F_contig106:267463..2677721622927469.340047-CDS-D-herbacea_F_contig106:267463..267772Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 267464..267772 +
1690790187.4134743-CDS-D-herbacea_F_contig106:267463..2677721690790187.4134743-CDS-D-herbacea_F_contig106:267463..267772Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 267464..267772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.3528643-UTR-D-herbacea_F_contig106:267772..2678821622927469.3528643-UTR-D-herbacea_F_contig106:267772..267882Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 267773..267882 +
1690790187.4250782-UTR-D-herbacea_F_contig106:267772..2678821690790187.4250782-UTR-D-herbacea_F_contig106:267772..267882Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 267773..267882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.616.1prot_D-herbacea_F_contig106.616.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 267464..267772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.616.1

>prot_D-herbacea_F_contig106.616.1 ID=prot_D-herbacea_F_contig106.616.1|Name=mRNA_D-herbacea_F_contig106.616.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=103bp
QINPRTYRWGPGKTSLGDQIPNNNTIFFLVFFVYPLQFDESRRGKKVLHS
SRDKNVGTYCSGKEGGAPTTVCDPRSELRREMGLEKESGKTINGTRKKKS
LL*
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mRNA from alignment at D-herbacea_F_contig106:267464..267882+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.616.1 ID=mRNA_D-herbacea_F_contig106.616.1|Name=mRNA_D-herbacea_F_contig106.616.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=419bp|location=Sequence derived from alignment at D-herbacea_F_contig106:267464..267882+ (Desmarestia herbacea DmunF female)
CAAATAAATCCACGCACCTACCGGTGGGGTCCCGGCAAAACATCGCTGGG
TGATCAGATACCCAACAACAACACGATTTTTTTTTTAGTTTTTTTTGTTT
ATCCATTACAATTCGATGAAAGTCGACGAGGGAAGAAAGTGCTGCATTCT
TCTCGCGACAAAAATGTAGGCACGTACTGTAGTGGGAAGGAGGGAGGAGC
GCCTACTACAGTATGTGACCCCAGATCTGAGTTACGAAGAGAGATGGGGC
TAGAGAAAGAATCGGGCAAGACAATAAATGGGACGCGAAAAAAAAAATCG
CTACTTTAACATCCCAGTTCATATAGCTCACAGGAGCGCTCTTCTACTCA
TCGCCCAGCGCGCCAGTCTAAGCAAAGCCGTGCTTGGTTGGACGAAAAAA
AAAAAAACGACCACTTAGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:267464..267882+

>mRNA_D-herbacea_F_contig106.616.1 ID=mRNA_D-herbacea_F_contig106.616.1|Name=mRNA_D-herbacea_F_contig106.616.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=618bp|location=Sequence derived from alignment at D-herbacea_F_contig106:267464..267882+ (Desmarestia herbacea DmunF female)
CAAATAAATCCACGCACCTACCGGTGGGGTCCCGGCAAAACATCGCTGGG
TGATCAGATACCCAACAACAACACGATTTTTTTTTTAGTTTTTTTTGTTT
ATCCATTACAATTCGATGAAAGTCGACGAGGGAAGAAAGTGCTGCATTCT
TCTCGCGACAAAAATGTAGGCACGTACTGTAGTGGGAAGGAGGGAGGAGC
GCCTACTACAGTATGTGACCCCAGATCTGAGTTACGAAGAGAGATGGGGC
TAGAGAAAGAATCGGGCAAGACAATAAATGGGACGCGAAAAAAAAAATCG
CTACTTTAACAAATAAATCCACGCACCTACCGGTGGGGTCCCGGCAAAAC
ATCGCTGGGTGATCAGATACCCAACAACAACACGATTTTTTTTTTAGTTT
TTTTTGTTTATCCATTACAATTCGATGAAAGTCGACGAGGGAAGAAAGTG
CTGCATTCTTCTCGCGACAAAAATGTAGGCACGTACTGTAGTGGGAAGGA
GGGAGGAGCGCCTACTACAGTATGTGACCCCAGATCTGAGTTACGAAGAG
AGATGGGGCTAGAGAAAGAATCGGGCAAGACAATAAATGGGACGCGAAAA
AAAAAATCGCTACTTTAA
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