mRNA_D-herbacea_F_contig105.533.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 149 bits (376), Expect = 7.290e-37 Identity = 120/405 (29.63%), Postives = 180/405 (44.44%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVLKCFMTNFSKNEGFFATTSSRWTKWMERQAS-----------TLFCL*VYLVLRALRFTLGSGRVRPSQSTQWDTST*GPF*T*CSQTNTPKGVGQTASVRTDNCFRKRPRGGP*QLKNKKMS*RSTFFRFLIKSQLSGELVRYAESAWGKKEVDAQ*P*GCVVVSTALGVRWMVRDGLSLFLFCPHTPAVVGQIVFFKVRYVWSIL*FFRNGCCSLWPVPLG--RVQTYFQVWCHSQTKFVLRVKG--VLKNARSEKNRSYAELPAARHQRKRVL 1152
+L ++WE+V+WL+C+ A ++ T F+ Y W Q+++ML+D ++V V+ F+AR+GE++ +WAY W+RGKGG+FL+ +L PGMR A FS +LE +R DP+T V+ + TL + K FMTNFS+++GFFA RW KWMER + F + A+ +G R W +G +T R + GG + K F R + EL +YA S WG KEVD P G ++ + + F F P ++ + F K + + V +G + + C T +R G VL+ AR K S+A PA RKRVL
Sbjct: 82 LLCKRWEQVEWLFCEYAARNLNKTTFRNY-WLQSAYMLRDPLVRVHVM-FTARLGELLFDWAYNWIRGKGGFFLKGEGVGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSEDKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALY--------------EGEPRTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLI-EAFFSKFDSCAQ-----KTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKRVL 464
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.840e-27 Identity = 98/313 (31.31%), Postives = 148/313 (47.28%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVLKCFMTNFSKNEGFFATTSSRWTKWMERQA------STLFCL*VYLVLRALRFTLGSGRVRPSQSTQWDTST*GPF*T*CSQTNTPKGVGQTASVRTDNCFRKRPRGGP*QLKNKKMS*RSTFFRF-LIKSQLS--GELVRYAESAWGKKEVDAQ*P*GCVVVSTALGVRWMVRDGLSLFLFCP 894
+L E+WE+V+ L+CD A +T+ YW Q+++ML+D F V V+ F+AR+ E++ +WAY W+ GKGG+FL+ RL PGMR A FS ++LE +R DP+T ++ R TL ++K FM FS++ FFA RW KWM+R + + C Y A +G G V + ++ + + +G +T R + GG + + K TF F I LS EL +YA S WG KE+D P ++ L + + F F P
Sbjct: 9 LLCERWEQVERLFCDFARNLNKTTVRN--YWVQSAYMLRDPFFHVHVM-FTARLKELLFDWAYNWIHGKGGFFLKGEGVDRRLFPGMRLVEVADFSRLLLQKLETIRKDPKTYFAALLDRVRATLSDPMVKFFMLAFSEDRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFY----ARTGIMGGGAVEQAVGPEFARAFLH-----VAWPGLYEGEPRTEREREYRTQLVKDLGGTTEARRKD---ELTFGLFSCIDGDLSVRSELEQYANSGWGNKEIDESAPKSTSELARLLDFPLLYQLVCHRFYFVP 306
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.770e-27 Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 7 FEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVLKCFMTNFSKNEGFFATTSSRWTKWMER 453
F++W+ V+ L + A ++ T F+ Y W Q+++ML++ ++V V+ F+AR+GE++ +WA W+RGKGG+FL+ RL PGMR A S +LE +R DP+T V+ R TL + K FMTNFS+++ FFA RW KWMER
Sbjct: 44 FQRWKRVEKLVREYAARYLNKTTFRNY-WLQSAYMLRNPLVRVHVV-FTARLGELLFDWANNWIRGKGGFFLKGEGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVLERVRTTLSEPMEKLFMTNFSEDKVFFAEFKKRWIKWMER 196
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.080e-26 Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVLKCFMTNFSKNEGFFATTSSRWTKWMER 453
+L ++WE+V WL+C A ++ T F+ Y W Q+ ++L+D L+V V+ +AR+GE++ +WAY W+RGKGG+FL+ RL PGMR A FS +LE +R DPET K F TN S+++GFFA RW KWMER
Sbjct: 9 LLCDRWEQVSWLFCKYAARYLNKTTFRNY-WLQSVYLLRDPILRVHVM-LTARLGELLFDWAYNWIRGKGGFFLKCEGVGRRLFPGMRLVEVADFSRLLLLKLETIRKDPETYFAAE-------------KLFTTNCSEDKGFFALFKKRWIKWMER 150
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 116 bits (290), Expect = 4.200e-25 Identity = 90/311 (28.94%), Postives = 145/311 (46.62%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVL-KCFMTNFSKNEGFFATTSSRWTKWMERQA------STLFCL*VYLVLRALRFTLGSGRVRPSQSTQWDTST*GPF*T*CSQTNTPKGVGQTASVRTDNCFRKRPRGGP*QLKNKKMS*RSTFFRFLIKSQLSGELVRYAESAWGKKEVDAQ*P*GCVVVSTALGVRWMVRDGLSLFLFCP 894
+L E+WE+V+WL+C+ A ++ T F+ Y W Q++ ML+D ++V V+ F+AR+GE++ +WAY W+ GKGG+FL+ RL P MR AA FS ++LE +R DP+T + ++ R TL + + F + + F A RW K M+R + + C Y A +G G V + ++ + P + +G +T R + GG + + K F + EL +YA S WG KE+D P G ++ + + R F F P
Sbjct: 82 LLCERWEQVEWLFCEYAARNLNKTTFRNY-WVQSACMLRDPLVRVHVM-FTARLGELLFDWAYNWIHGKGGFFLKGEGVGRRLFPAMRLVEAADFSCLLLQKLETIRKDPQTYVAALLDRVRTTLSDPMRGESFRVELQRGQFFIAEFKKRWIKSMQRHQELPLSMARIGCPSFY----ARTGIMGGGAVEQAVGPEFARAF--PH---VAWPGLYEGEPRTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEIDESAPKGTSALARLFDLPLLYRLVCHRFYFVP 381
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE) HSP 1 Score: 111 bits (277), Expect = 4.830e-25 Identity = 57/140 (40.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTLDAGVLKCFMTNFSKN 402
+L E+WE+V+WL+C+ A ++ T F+ Y W Q++ ML+D ++V V+ F+AR+GE++ +WAY W+ GKGG+FL+ RL PGMR A FS ++LE + DP+T ++ R TL + K FM NFS++
Sbjct: 82 LLCERWEQVEWLFCEYAARNLNKTTFRNY-WVQSACMLRDPLVRVHVM-FTARLGELLFDWAYNWIHGKGGFFLKGEGVGRRLSPGMRLVEVADFSRLLLQKLETIHKDPQTYFAALLDRVRTTLSDPMAKVFMLNFSED 219
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5KE81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE81_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.060e-18 Identity = 49/112 (43.75%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPET 318
ILFE+W+EV WL+ + A ++ T ++ Y W +++ LQD + VQV+ F+AR+GE+V +WAY W+RGKGG+FL+ RL PGMR A FS +++E +R +P+T
Sbjct: 54 ILFERWDEVAWLFGEWAACNIGKTTYRNY-WLKSAVALQDPLMLVQVM-FAARLGELVFDWAYNWIRGKGGFFLKCEGVGRRLFPGMRLVEVADFSRLLLQKVETIRKEPKT 163
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.350e-17 Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query: 10 EQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPET 318
E+WE+V+WL+C+ A ++ T ++ Y W Q++ ML+D ++V V+ F+AR+GE++ +WAY W+ GKGG+FL+ RL PGMR A FS ++LE + DP+T
Sbjct: 148 ERWEQVEWLFCEYAAGNLNKTTYRNY-WVQSACMLRDPLVRVHVM-FTARLGELLFDWAYNWIHGKGGFFLKGEGVGRRLSPGMRLVEVADFSRLLLQKLETIHKDPQT 254
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5KEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV4_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.300e-15 Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 1 ILFEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFS 270
ILFE+W+E+ WL+ D A ++ T ++ Y W + + L+D + VQVI F+AR+GE+V +WAY W+RGKGG+FL+ RL PGMR A FS
Sbjct: 102 ILFERWDEIAWLFGDLAACNIGKTAYRNY-WLKFAVALEDPLILVQVI-FAARLGELVFDWAYNWIRGKGGFFLKGEGVGRRLFPGMRLVEVADFS 195
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.710e-15 Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 7 FEQWEEVQWLYCD*APTHVLSTMFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLE------RLPPGMRFGGAAGFSLEFFRRLEEVRADPETCLGGVVALARCTL 357
F++W+ V+ L + A ++ T F+ Y W Q+++ML++ ++V V+ F+AR+GE++ +WA W+RGKGG+FL+ RL PGMR A S +LE +R DP+T V+ R TL
Sbjct: 44 FQRWKRVEKLVREYAARYLNKTTFRNY-WLQSAYMLRNPLVRVHVV-FTARLGELLFDWANNWIRGKGGFFLKGEGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVLERVRTTL 164 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.533.1 >prot_D-herbacea_F_contig105.533.1 ID=prot_D-herbacea_F_contig105.533.1|Name=mRNA_D-herbacea_F_contig105.533.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=136bp MFKIYYWSQTSFMLQDAFLKVQVIKFSARVGEVVLNWAYRWLRGKGGYFLback to top mRNA from alignment at D-herbacea_F_contig105:257673..259090+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.533.1 ID=mRNA_D-herbacea_F_contig105.533.1|Name=mRNA_D-herbacea_F_contig105.533.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1418bp|location=Sequence derived from alignment at D-herbacea_F_contig105:257673..259090+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:257673..259090+ >mRNA_D-herbacea_F_contig105.533.1 ID=mRNA_D-herbacea_F_contig105.533.1|Name=mRNA_D-herbacea_F_contig105.533.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=816bp|location=Sequence derived from alignment at D-herbacea_F_contig105:257673..259090+ (Desmarestia herbacea DmunF female)back to top |