prot_D-herbacea_M_contig92.15855.1 (polypeptide) Desmarestia herbacea DmunM male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_M_contig92.15855.1
Unique Name	prot_D-herbacea_M_contig92.15855.1
Type	polypeptide
Organism	Desmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Sequence length	514

Homology

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 9.640e-71
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 0

Query:  376 KIAKAKEKSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGLL 513
            K+AKAK +SSNK+KRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKY+SFAKA++IREKWNKKSKGYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKEVKKK    X VKKALGLL
Sbjct:  399 KVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 8.430e-70
Identity = 248/540 (45.93%), Postives = 271/540 (50.19%), Query Frame = 0

Query:    1 MADEDALFAEFLGEIKS----AEAVIAAPA---EDDTASETASVGEV-----EGEG-GATEVDTGKRKGDAATSASPPVKKPKFMGKLVAAALPMRAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGHGKGGHPAGGQAAPGPAVSARGLALIGPCRNWGGGGGPA-LEKNGATANGAKVEQRREGSXXXXXXXXXGTVGDGPPPGMDXXXXXXXXXXXXXXXXXXXXGGGXXXXEAMGMHHPQMGMPQGG---------GMHMGMMGGGRMMPMXXMXXXXXXXNGMGPGGYGGGYX-------------MPPGMXXXXXXXXXXXXPPPGMRQGENGYPPPPVAFEGPYSD-AMGYGYGGQMNGMPPPGAGGVPMGMAVGAEGAAEGKGA-------KIAKAKEKSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 496
            MADEDALFAEF+GEIKS    AE   AA A   +D  AS+ ASVG+V     EG G G    DT KR+G+   S SP  KKP+FMGKLVAAA P++AG  A                                             G G      G                        G GG     K G    G K  +   G+XXXXXXXXX            XXXXXX              GG       M MH+    M  GG         GMHMG    G    M  M        G G  G+G   X             MPPG XXXXXXXXXXXX                +   GPY D +MGYGYGG MNGM P G                            K+AKAK +SSNK+KRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKY+SFAKA+IIREKWNKKSKGYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKE+
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKARTGDKGTAAAKKDP----------------DGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXX-----XXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGA------GSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXX-------------XXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.820e-52
Identity = 91/127 (71.65%), Postives = 109/127 (85.83%), Query Frame = 0

Query:  387 KYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGLL 513
            K+ RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  Y+SF KA+++REK N KSKGYGFVSF DG DM++ALRE+NGKYLGNRPMKISKSSW +R++KEV+KK K+  + KKALGLL
Sbjct:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.750e-44
Identity = 80/130 (61.54%), Postives = 104/130 (80.00%), Query Frame = 0

Query:  383 KSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGL 512
            K+S +  R AGGK+W D++L  WPEND+RLFVG+LGNEVTD+ ++ AF  Y+S AKA++IREK++ KSKGYGFVSFLD  D  KALRE NGKY+GNRP K+ +S+WKDR +KEV+KK K+  K KK+ G+
Sbjct:   52 KASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.020e-44
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 0

Query:  383 KSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGL 512
            K+  KY R AGG++WED TLAEW END+RLFVGDLG +VT   L   FR+Y SFAKA+I R++   K + +GFVSFLDGMD +KA+REQ GKY G RPMKI +S+WKDRDV+E+KKK KR  K +K LGL
Sbjct:   36 KAPKKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLGL 165

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 164 bits (414), Expect = 7.260e-44
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 0

Query:  390 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGL 512
            R AGGK+WED+TL EWPEND+RLFVGDLG + T   L   FRKY SFAKARI R++   K + YGFVSFLDGMDM+KALREQNGKY GNRPMK+SKS+WK+RD  E++KK +   K  K LG+
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLGV 218

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.510e-43
Identity = 83/134 (61.94%), Postives = 105/134 (78.36%), Query Frame = 0

Query:  381 KEKSSNKYKRV--AGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKALGL 512
            +EKS+ + K+V  A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KY+SFAKA+++R+K+  KSKGYGF SF+D  D  KALRE NGKY+GNRP+K+ KS W++RD+KEVKK     X  K ALGL
Sbjct:  165 REKSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALGL 298

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A1V9YAQ1_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.990e-43
Identity = 84/134 (62.69%), Postives = 97/134 (72.39%), Query Frame = 0

Query:  377 IAKAKEKSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKRAXKVKKAL 510
            +A A   S  K+ RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L  AF  YSSFA A+++R+K   KS+GYGFVSFLD  D  KA+R+ NGKY+GNRP+KISK  W DR +  VKKKVK   K KK L
Sbjct:  144 VANAAVNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLTQAFSTYSSFAMAKVVRDKLTHKSRGYGFVSFLDPFDAAKAMRDMNGKYIGNRPVKISKGKWADRALDVVKKKVKAGKKSKKHL 277

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.140e-42
Identity = 77/119 (64.71%), Postives = 95/119 (79.83%), Query Frame = 0

Query:  384 SSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKVKR 502
            S  K+ R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +YSSFA AR+IR+K   KSKGYGFVSF+DG+D +KA+RE NGKY+G+RP+KI+K  W++R ++ VKKK K+
Sbjct:  158 SDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKKNKK 276

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BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)

HSP 1 Score: 162 bits (410), Expect = 1.720e-42
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0

Query:  377 IAKAKEKSSNKYKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKK 499
            +A A+  S  K+ RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF  Y+SFA A+++R+K   KSKGYGFVSFLD  D  KA+RE NGKY+GNRP+KISK  W+DR +  VKKK
Sbjct:  150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVVKKK 272

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot

BLAST of mRNA_D-herbacea_M_contig92.15855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KAJ6_9PHAE	9.640e-71	89.13	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LJT5_ECTSI	8.430e-70	45.93	Temporarily Assigned Gene name family member (Tag-...	[more]
A0A836CHC6_9STRA	6.820e-52	71.65	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3JN71_9STRA	1.750e-44	61.54	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A7R9U4X3_9STRA	2.020e-44	63.08	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S1XX46_9STRA	7.260e-44	65.85	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2RJZ2_9STRA	2.510e-43	61.94	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A1V9YAQ1_9STRA	3.990e-43	62.69	RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=...	[more]
A0A6G0XJI1_9STRA	1.140e-42	64.71	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
T0QBK6_SAPDV	1.720e-42	64.23	RRM domain-containing protein n=1 Tax=Saprolegnia ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunM male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 411..484 e-value: 5.3E-16 score: 69.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 412..482 e-value: 5.1E-15 score: 55.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 410..488 score: 15.63
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 366..502 e-value: 1.0E-19 score: 73.0
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 368..503
None	No IPR available	PANTHER	PTHR13952:SF8	RRM-CONTAINING PROTEIN-RELATED	coord: 368..503
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 397..487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_M_contig92	contig	D-herbacea_M_contig92:674128..692316 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunM male	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunM male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_M_contig92.15855.1	mRNA_D-herbacea_M_contig92.15855.1	Desmarestia herbacea DmunM male	mRNA	D-herbacea_M_contig92 674128..693022 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_M_contig92.15855.1 ID=prot_D-herbacea_M_contig92.15855.1|Name=mRNA_D-herbacea_M_contig92.15855.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=514bp
MADEDALFAEFLGEIKSAEAVIAAPAEDDTASETASVGEVEGEGGATEVD
TGKRKGDAATSASPPVKKPKFMGKLVAAALPMRAGVAAAAAAATKNEVSK
STVTAKSGAGSGSAVSPPSSGAAAAAANGGGGSGHGKGGHPAGGQAAPGP
AVSARGLALIGPCRNWGGGGGPALEKNGATANGAKVEQRREGSGGGSGGG
GAGTVGDGPPPGMDGSGMPMGGGGGGMHGHLPAPGGGGGGGEAMGMHHPQ
MGMPQGGGMHMGMMGGGRMMPMGGMNMSMMGGNGMGPGGYGGGYGMPPGM
GMEMGMGMGMGMPPPGMRQGENGYPPPPVAFEGPYSDAMGYGYGGQMNGM
PPPGAGGVPMGMAVGAEGAAEGKGAKIAKAKEKSSNKYKRVAGGKSWEDE
TLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYSSFAKARIIREKWNKKS
KGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEVKKKV
KRAKKVKKALGLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom