mRNA_D-herbacea_M_contig995.16269.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig995.16269.1
Unique NamemRNA_D-herbacea_M_contig995.16269.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig995.16269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig995contigD-herbacea_M_contig995:2752..2954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size193
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig995.16269.1prot_D-herbacea_M_contig995.16269.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig995 2752..2926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935827.5956903-CDS-D-herbacea_M_contig995:2751..28331622935827.5956903-CDS-D-herbacea_M_contig995:2751..2833Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig995 2752..2833 -
1690880722.8162901-CDS-D-herbacea_M_contig995:2751..28331690880722.8162901-CDS-D-herbacea_M_contig995:2751..2833Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig995 2752..2833 -
1622935827.6137805-CDS-D-herbacea_M_contig995:2843..29261622935827.6137805-CDS-D-herbacea_M_contig995:2843..2926Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig995 2844..2926 -
1690880722.8326082-CDS-D-herbacea_M_contig995:2843..29261690880722.8326082-CDS-D-herbacea_M_contig995:2843..2926Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig995 2844..2926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935827.6304796-UTR-D-herbacea_M_contig995:2926..29541622935827.6304796-UTR-D-herbacea_M_contig995:2926..2954Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig995 2927..2954 -
1690880722.843963-UTR-D-herbacea_M_contig995:2926..29541690880722.843963-UTR-D-herbacea_M_contig995:2926..2954Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig995 2927..2954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig995.16269.1

>prot_D-herbacea_M_contig995.16269.1 ID=prot_D-herbacea_M_contig995.16269.1|Name=mRNA_D-herbacea_M_contig995.16269.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=55bp
MRRWYISFMLFVLSGVVWRARRPCIFCIICSCTWHCMQIYMVVSILRSMS
IFMRA
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mRNA from alignment at D-herbacea_M_contig995:2752..2954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig995.16269.1 ID=mRNA_D-herbacea_M_contig995.16269.1|Name=mRNA_D-herbacea_M_contig995.16269.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=203bp|location=Sequence derived from alignment at D-herbacea_M_contig995:2752..2954- (Desmarestia herbacea DmunM male)
CTATAGGTTTCTCAAGGCCTGCAACAGAATGCGTCGGTGGTATATTTCTT
TTATGTTGTTTGTGTTGTCCGGCGTAGTGTGGCGTGCGAGAAGGCCGTGC
ATATTTTGTATGTACTTCGAGTATATGTTCATGCACATGGCATTGCATGC
AGATATACATGGTAGTCTCTATACTTCGAAGTATGTCCATATTTATGCGG
GCT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig995:2752..2954-

>mRNA_D-herbacea_M_contig995.16269.1 ID=mRNA_D-herbacea_M_contig995.16269.1|Name=mRNA_D-herbacea_M_contig995.16269.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=330bp|location=Sequence derived from alignment at D-herbacea_M_contig995:2752..2954- (Desmarestia herbacea DmunM male)
ATGCGTCGGTGGTATATTTCTTTTATGTTGTTTGTGTTGTCCGGCGTAGT
GTGGCGTGCGAGAAGGCCGTGCATATTTTGTATATGCGTCGGTGGTATAT
TTCTTTTATGTTGTTTGTGTTGTCCGGCGTAGTGTGGCGTGCGAGAAGGC
CGTGCATATTTTGTATTATATGTTCATGCACATGGCATTGCATGCAGATA
TACATGGTAGTCTCTATACTTCGAAGTATGTCCATATTTATGCGGGCTTA
TATGTTCATGCACATGGCATTGCATGCAGATATACATGGTAGTCTCTATA
CTTCGAAGTATGTCCATATTTATGCGGGCT
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