mRNA_D-herbacea_M_contig99.16266.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig99.16266.1
Unique NamemRNA_D-herbacea_M_contig99.16266.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig99.16266.1 vs. uniprot
Match: D8LBB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB8_ECTSI)

HSP 1 Score: 625 bits (1611), Expect = 5.630e-219
Identity = 309/457 (67.61%), Postives = 350/457 (76.59%), Query Frame = 3 
Query:  261 HQRRPLEIMCNHCLCTSASHVEAAAAAPVDGRRCCGKEREP-WDRACEACRLSEECRAAGREKNCPVEEEAEXXXXXXXXXXXXXXXXXXXXXXXXXXACKTKWG---CMHCKCDCAADRPHTFEEKSARVASNPGSQSMCGHCLGCWSGWCFPAGGSRSGKRKRVDASQGPEEPFARLWRPGRDADVYVLTGLFDSLTGLLPEGGFPHAVFGSSLRYLKGFAGTLDAKHALREAGVTAGERAHAIGEAWSGGGSQHPPEKPAGARKVVAAPLRQGAGADRHFSRRHGRRDHNWQWNMLESPWSLGLMRKGRLALGVTEEEADEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPEAAFVCLQIQGALLGRAVEAAKEMGVDLPPKFEEKGRFKFAINELDAWAMVGGAARNEAEHAVVCGRRTIPADEPGRGFVRIAFNMRWGWQDDRRV 1619
            H+ RP EI+C HCLC++ +H +       +G+RCCG  RE  WDR CE C+ SE CRA  R + CP EE                              CKT+     CMHC C CA   PHTFE+KS  +++NP  Q  C  CL CW+GWC P  G+   KRK V A+  PEEPFAR WRPGRDADV+VLTGLFD LTGLLPE GFP+AVFGSSLRY KG  G+ +AKHAL+EAGVT G+R+ AIGEAWSGGGS +PPE+PAGARKVVAAPLRQG GA+RHFSR HGRRDHNWQW+ML+SPWSLGLM KGRLALGV+EEEA+EFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPE+AFVC+Q QG  LGRAVE A+E+GV+LPP+  EKGRFKFAINELDAWAMVGG ARN+AEHAVVCGR+ IPA EPG GFVR+AFNMRWGWQDDRRV
Sbjct:   88 HEIRPEEIVCTHCLCSNENHEDTGP----NGQRCCGGLREGLWDRVCELCKASESCRAWARARACPAEEAGRAPGEPNHAGNSTGEKP-----------CKTEGRANFCMHCTCPCAQVHPHTFEDKSNWMSTNPEVQRACRICLPCWAGWCIPLSGT---KRKLVGATMEPEEPFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGSAEAKHALKEAGVTPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRVHGRRDHNWQWDMLKSPWSLGLMAKGRLALGVSEEEANEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQGQGERLGRAVELAEELGVELPPRVAEKGRFKFAINELDAWAMVGGTARNDAEHAVVCGRKVIPAGEPGEGFVRVAFNMRWGWQDDRRV 526
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig99.16266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB8_ECTSI5.630e-21967.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig99contigD-herbacea_M_contig99:1124186..1127204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004500.1
Exons3
Model size1622
Cds size1338
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig99.16266.1prot_D-herbacea_M_contig99.16266.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig99 1125095..1127204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935827.1716151-UTR-D-herbacea_M_contig99:1124185..11243521622935827.1716151-UTR-D-herbacea_M_contig99:1124185..1124352Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig99 1124186..1124352 +
1690880722.5636654-UTR-D-herbacea_M_contig99:1124185..11243521690880722.5636654-UTR-D-herbacea_M_contig99:1124185..1124352Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig99 1124186..1124352 +
1622935827.1977098-UTR-D-herbacea_M_contig99:1124977..11250941622935827.1977098-UTR-D-herbacea_M_contig99:1124977..1125094Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig99 1124978..1125094 +
1690880722.5793805-UTR-D-herbacea_M_contig99:1124977..11250941690880722.5793805-UTR-D-herbacea_M_contig99:1124977..1125094Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig99 1124978..1125094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935827.2176878-CDS-D-herbacea_M_contig99:1125094..11254561622935827.2176878-CDS-D-herbacea_M_contig99:1125094..1125456Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig99 1125095..1125456 +
1690880722.5903475-CDS-D-herbacea_M_contig99:1125094..11254561690880722.5903475-CDS-D-herbacea_M_contig99:1125094..1125456Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig99 1125095..1125456 +
1622935827.2873697-CDS-D-herbacea_M_contig99:1126228..11272041622935827.2873697-CDS-D-herbacea_M_contig99:1126228..1127204Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig99 1126229..1127204 +
1690880722.6035469-CDS-D-herbacea_M_contig99:1126228..11272041690880722.6035469-CDS-D-herbacea_M_contig99:1126228..1127204Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig99 1126229..1127204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig99.16266.1

>prot_D-herbacea_M_contig99.16266.1 ID=prot_D-herbacea_M_contig99.16266.1|Name=mRNA_D-herbacea_M_contig99.16266.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=446bp
MCNHCLCTSASHVEAAAAAPVDGRRCCGKEREPWDRACEACRLSEECRAA
GREKNCPVEEEAEEEGGGRGEGAKVKGKTAAGSGGGGGGACKTKWGCMHC
KCDCAADRPHTFEEKSARVASNPGSQSMCGHCLGCWSGWCFPAGGSRSGK
RKRVDASQGPEEPFARLWRPGRDADVYVLTGLFDSLTGLLPEGGFPHAVF
GSSLRYLKGFAGTLDAKHALREAGVTAGERAHAIGEAWSGGGSQHPPEKP
AGARKVVAAPLRQGAGADRHFSRRHGRRDHNWQWNMLESPWSLGLMRKGR
LALGVTEEEADEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPE
AAFVCLQIQGALLGRAVEAAKEMGVDLPPKFEEKGRFKFAINELDAWAMV
GGAARNEAEHAVVCGRRTIPADEPGRGFVRIAFNMRWGWQDDRRV*
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mRNA from alignment at D-herbacea_M_contig99:1124186..1127204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig99.16266.1 ID=mRNA_D-herbacea_M_contig99.16266.1|Name=mRNA_D-herbacea_M_contig99.16266.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3019bp|location=Sequence derived from alignment at D-herbacea_M_contig99:1124186..1127204+ (Desmarestia herbacea DmunM male)
AATTTCTCAATGGAAGCCGACATGCGGCGAGCGAAAGACAGGTGCCCCGC
GTGCGCTAAGCTCCAGCTAGAGCTCGAGAACGGCCAGTTCGTACCGGGCG
AGATTGTGAATGGCCAGATCCACGACCTTCCGCGTTCGGGAGGCAGACGC
GCGAGAAGGGCTTGCCCGTCGACAACATGGTCTCCTGTATCCGATTCTGG
ATCCAGGAAGCACCTTAAGGCTCCTCCTCCTGCTAATATTGATTTTAGTA
TTAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTTGTAGTTGTAGT
AGTAGCGCGGCGAGCTCAGCTAGCTTGGACGCCAAGCAGGAACAGCATGA
GCAGCAGGAGCAGCAGCAGCAGCAGCGGGAGGAGCAGGAGGAGGAGGAGG
AACAACAGCAGCAGCACGAGCGGGAGGAGGAGGAGGAGGAGCAGCAGCAG
GAGCAGCAGAAGGAGCAGGAACAACAGGAGCAGCAGGAGCAGAAGCAGGA
GCAGGAGCAGGAGCAGGAGGAGGAAAAGGAGCAACGGCAGGAGCAGGAGG
AGCAGCACCTGCAGCACCAACAGGCGGAGGAGGAACAGCAGCAGCAGCAA
CAGCAGCAGCAACAGCAGGAGGAGGAGGAACAGCAGGAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGGGAGGAGCAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAACAGCAGCAGCAGCAGCAGCAGGAGGAGGAACAGCAGCAG
CAGCAGCAGCCGCAGCAGCAGGAAAAGCAGGAACAGGAACAGGAACAGGA
ACAGGGACAGGGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCAGC
CTACCTTGCGGGCGACCCCTACTCAAAACGAGCTGCACCAGCGCAGACCC
CTCGAGATCATGTGCAATCACTGCCTGTGCACGAGCGCGTCGCACGTGGA
GGCGGCGGCAGCGGCGCCGGTGGACGGGCGACGATGCTGTGGCAAGGAGA
GGGAGCCGTGGGACCGGGCGTGCGAGGCCTGCCGTCTGTCGGAGGAGTGC
AGGGCGGCCGGGAGAGAAAAAAATTGTCCTGTGGAGGAGGAGGCGGAGGA
GGAGGGGGGGGGGAGGGGGGAGGGGGCGAAGGTGAAAGGGAAGACGGCGG
CTGGCAGCGGCGGGGGTGGCGGCGGTGCTTGCAAGACCAAGTGGGGCTGT
ATGCACTGCAAGTGCGACTGTGCGGCGGACAGACCACACACATTCGAGGA
GAAGTCTGCTCGCGTGGCCAGGTGACAAGACATTGCACAGGAGGCGATGA
TGAATAGAGGTGGTGATGCGGTGTGTGTTTGTGAATTGGTACTGTTGGGT
ACCAAGGTATGATATCCTGAACTGAAACGATGATGCCATGCATGTCATAT
ATACGTCGTGAGTGAGATTACTAGTATACTGTATGTTGTACTCTGCTGTC
GCACTTTGCGATACGGGCGTGCATGGAATAGGCGGCGTGTGGGGTCGCCC
ATCTAACATTTGGAGACGATGATGCCACGTAAAGCAACCATGCGTGCAAC
ATGCGGAGAAAGACTATTCGAAGAGCAGGCACATAACAAACAATGGTTTT
CAAAATATCCAAAAGCATATCCTTGTTACGACTGTAATGTACTTGCTGTT
GTACGGTACCTGGCAGTATTTGTTTGTTTCACGCTGTTTCTGCTGTCGTA
CATCAGGATGGTTACGCTCTGTAGTATCGCCGCTTTTATCCCATCGCTAT
GTCCTTCTAGCATCATACCATTCTCCGAGGTTGGATTACGAAAGTTCGAT
AGACGGGATCTTCGGGGCACCGTTTATTATACCAAATAGTACGAACGCCG
GCAGGTAGGGATTTTTGTAGAACTAATCCCTAACTCTAACCCAACCCACA
CCCTATAATAAGTAGGTTAAAAAAAATCTCCCGAAAAATCCCGTCTAACA
CTTTGTAATGTAATCATCACTCTCCCCCTATCATACCGCCCCCGCCCTCC
CCTCTTATTTGGATTCACACTCGAAAAAACACACACACAACAGTAATCCC
GGGAGCCAAAGCATGTGCGGCCATTGCCTCGGGTGCTGGAGCGGGTGGTG
CTTCCCGGCGGGCGGCAGCAGGAGCGGCAAGCGTAAGCGAGTGGATGCGA
GCCAGGGACCCGAGGAGCCGTTCGCGCGGCTGTGGCGCCCGGGGCGGGAC
GCCGACGTGTACGTCCTCACGGGCCTCTTCGACTCCCTCACCGGGCTCCT
TCCCGAGGGCGGCTTCCCCCACGCCGTGTTCGGGTCCTCCCTGAGGTACC
TCAAGGGCTTCGCGGGGACCCTTGACGCCAAGCACGCCCTCCGAGAGGCC
GGGGTTACCGCGGGAGAGCGCGCACATGCGATCGGGGAGGCGTGGAGCGG
CGGCGGTAGCCAGCATCCTCCGGAAAAACCAGCCGGGGCGCGGAAGGTGG
TTGCAGCGCCGCTACGGCAGGGCGCGGGGGCGGACAGGCACTTCTCGAGG
CGGCACGGGCGGAGGGACCACAACTGGCAGTGGAACATGCTGGAGAGCCC
GTGGTCGCTCGGGCTAATGCGAAAGGGAAGGCTTGCGCTGGGGGTGACGG
AGGAGGAGGCGGACGAGTTCGAGGAGGCCGGAATCATCGCGTTTCCGGGA
CACGTGGTGAAGCACAAGGATTCCGTAAAGAACGGCGGGTACGGTAAGAC
TATCGGGACCCTGGTGCTAAGGTCGCCCGAGGCCGCGTTCGTGTGCCTGC
AGATACAGGGGGCGCTGCTCGGGAGGGCGGTAGAAGCGGCCAAGGAGATG
GGAGTCGATCTGCCGCCCAAGTTCGAGGAGAAGGGGCGGTTCAAGTTCGC
CATCAACGAGCTGGACGCCTGGGCCATGGTCGGGGGCGCGGCGAGGAACG
AGGCGGAGCACGCGGTGGTGTGCGGCCGGCGCACGATTCCCGCGGACGAG
CCCGGGCGGGGCTTCGTTCGCATCGCGTTTAACATGCGCTGGGGCTGGCA
GGACGACCGGAGGGTGTGA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig99:1124186..1127204+

>mRNA_D-herbacea_M_contig99.16266.1 ID=mRNA_D-herbacea_M_contig99.16266.1|Name=mRNA_D-herbacea_M_contig99.16266.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=2676bp|location=Sequence derived from alignment at D-herbacea_M_contig99:1124186..1127204+ (Desmarestia herbacea DmunM male)
ATGTGCAATCACTGCCTGTGCACGAGCGCGTCGCACGTGGAGGCGGCGGC
AGCGGCGCCGGTGGACGGGCGACGATGCTGTGGCAAGGAGAGGGAGCCGT
GGGACCGGGCGTGCGAGGCCTGCCGTCTGTCGGAGGAGTGCAGGGCGGCC
GGGAGAGAAAAAAATTGTCCTGTGGAGGAGGAGGCGGAGGAGGAGGGGGG
GGGGAGGGGGGAGGGGGCGAAGGTGAAAGGGAAGACGGCGGCTGGCAGCG
GCGGGGGTGGCGGCGGTGCTTGCAAGACCAAGTGGGGCTGTATGCACTGC
AAGTGCGACTGTGCGGCGGACAGACCACACACATTCGAGGAGAAGTCTGC
TCGCGTGGCCAGATGTGCAATCACTGCCTGTGCACGAGCGCGTCGCACGT
GGAGGCGGCGGCAGCGGCGCCGGTGGACGGGCGACGATGCTGTGGCAAGG
AGAGGGAGCCGTGGGACCGGGCGTGCGAGGCCTGCCGTCTGTCGGAGGAG
TGCAGGGCGGCCGGGAGAGAAAAAAATTGTCCTGTGGAGGAGGAGGCGGA
GGAGGAGGGGGGGGGGAGGGGGGAGGGGGCGAAGGTGAAAGGGAAGACGG
CGGCTGGCAGCGGCGGGGGTGGCGGCGGTGCTTGCAAGACCAAGTGGGGC
TGTATGCACTGCAAGTGCGACTGTGCGGCGGACAGACCACACACATTCGA
GGAGAAGTCTGCTCGCGTGGCCAGTAATCCCGGGAGCCAAAGCATGTGCG
GCCATTGCCTCGGGTGCTGGAGCGGGTGGTGCTTCCCGGCGGGCGGCAGC
AGGAGCGGCAAGCGTAAGCGAGTGGATGCGAGCCAGGGACCCGAGGAGCC
GTTCGCGCGGCTGTGGCGCCCGGGGCGGGACGCCGACGTGTACGTCCTCA
CGGGCCTCTTCGACTCCCTCACCGGGCTCCTTCCCGAGGGCGGCTTCCCC
CACGCCGTGTTCGGGTCCTCCCTGAGGTACCTCAAGGGCTTCGCGGGGAC
CCTTGACGCCAAGCACGCCCTCCGAGAGGCCGGGGTTACCGCGGGAGAGC
GCGCACATGCGATCGGGGAGGCGTGGAGCGGCGGCGGTAGCCAGCATCCT
CCGGAAAAACCAGCCGGGGCGCGGAAGGTGGTTGCAGCGCCGCTACGGCA
GGGCGCGGGGGCGGACAGGCACTTCTCGAGGCGGCACGGGCGGAGGGACC
ACAACTGGCAGTGGAACATGCTGGAGAGCCCGTGGTCGCTCGGGCTAATG
CGAAAGGGAAGGCTTGCGCTGGGGGTGACGGAGGAGGAGGCGGACGAGTT
CGAGGAGGCCGGAATCATCGCGTTTCCGGGACACGTGGTGAAGCACAAGG
ATTCCGTAAAGAACGGCGGGTACGGTAAGACTATCGGGACCCTGGTGCTA
AGGTCGCCCGAGGCCGCGTTCGTGTGCCTGCAGATACAGGGGGCGCTGCT
CGGGAGGGCGGTAGAAGCGGCCAAGGAGATGGGAGTCGATCTGCCGCCCA
AGTTCGAGGAGAAGGGGCGGTTCAAGTTCGCCATCAACGAGCTGGACGCC
TGGGCCATGGTCGGGGGCGCGGCGAGGAACGAGGCGGAGCACGCGGTGGT
GTGCGGCCGGCGCACGATTCCCGCGGACGAGCCCGGGCGGGGCTTCGTTC
GCATCGCGTTTAACATGCGCTGGGGCTGGCAGGACGACCGGAGGGTGTGA
TAATCCCGGGAGCCAAAGCATGTGCGGCCATTGCCTCGGGTGCTGGAGCG
GGTGGTGCTTCCCGGCGGGCGGCAGCAGGAGCGGCAAGCGTAAGCGAGTG
GATGCGAGCCAGGGACCCGAGGAGCCGTTCGCGCGGCTGTGGCGCCCGGG
GCGGGACGCCGACGTGTACGTCCTCACGGGCCTCTTCGACTCCCTCACCG
GGCTCCTTCCCGAGGGCGGCTTCCCCCACGCCGTGTTCGGGTCCTCCCTG
AGGTACCTCAAGGGCTTCGCGGGGACCCTTGACGCCAAGCACGCCCTCCG
AGAGGCCGGGGTTACCGCGGGAGAGCGCGCACATGCGATCGGGGAGGCGT
GGAGCGGCGGCGGTAGCCAGCATCCTCCGGAAAAACCAGCCGGGGCGCGG
AAGGTGGTTGCAGCGCCGCTACGGCAGGGCGCGGGGGCGGACAGGCACTT
CTCGAGGCGGCACGGGCGGAGGGACCACAACTGGCAGTGGAACATGCTGG
AGAGCCCGTGGTCGCTCGGGCTAATGCGAAAGGGAAGGCTTGCGCTGGGG
GTGACGGAGGAGGAGGCGGACGAGTTCGAGGAGGCCGGAATCATCGCGTT
TCCGGGACACGTGGTGAAGCACAAGGATTCCGTAAAGAACGGCGGGTACG
GTAAGACTATCGGGACCCTGGTGCTAAGGTCGCCCGAGGCCGCGTTCGTG
TGCCTGCAGATACAGGGGGCGCTGCTCGGGAGGGCGGTAGAAGCGGCCAA
GGAGATGGGAGTCGATCTGCCGCCCAAGTTCGAGGAGAAGGGGCGGTTCA
AGTTCGCCATCAACGAGCTGGACGCCTGGGCCATGGTCGGGGGCGCGGCG
AGGAACGAGGCGGAGCACGCGGTGGTGTGCGGCCGGCGCACGATTCCCGC
GGACGAGCCCGGGCGGGGCTTCGTTCGCATCGCGTTTAACATGCGCTGGG
GCTGGCAGGACGACCGGAGGGTGTGA
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