mRNA_D-herbacea_M_contig961.16089.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig961.16089.1
Unique NamemRNA_D-herbacea_M_contig961.16089.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig961.16089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig961contigD-herbacea_M_contig961:15819..17042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935792.3948846-CDS-D-herbacea_M_contig961:15818..159351622935792.3948846-CDS-D-herbacea_M_contig961:15818..15935Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig961 15819..15935 +
1690880706.2241156-CDS-D-herbacea_M_contig961:15818..159351690880706.2241156-CDS-D-herbacea_M_contig961:15818..15935Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig961 15819..15935 +
1622935792.484636-CDS-D-herbacea_M_contig961:16953..170401622935792.484636-CDS-D-herbacea_M_contig961:16953..17040Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig961 16954..17040 +
1690880706.2371297-CDS-D-herbacea_M_contig961:16953..170401690880706.2371297-CDS-D-herbacea_M_contig961:16953..17040Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig961 16954..17040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig961.16089.1prot_D-herbacea_M_contig961.16089.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig961 15819..17040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig961.16089.1

>prot_D-herbacea_M_contig961.16089.1 ID=prot_D-herbacea_M_contig961.16089.1|Name=mRNA_D-herbacea_M_contig961.16089.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=68bp
RAHTDARHPSRSVRRASPQRKALAYRLQQSFLVVELDMKGVLDRRKEGTT
QAIAFPISSKARCGGRLG
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mRNA from alignment at D-herbacea_M_contig961:15819..17042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig961.16089.1 ID=mRNA_D-herbacea_M_contig961.16089.1|Name=mRNA_D-herbacea_M_contig961.16089.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1224bp|location=Sequence derived from alignment at D-herbacea_M_contig961:15819..17042+ (Desmarestia herbacea DmunM male)
CGGGCGCACACGGATGCGAGGCATCCCTCTCGAAGTGTGAGAAGAGCGAG
CCCACAAAGAAAAGCTCTTGCTTACCGTCTTCAGCAGTCATTCCTCGTGG
TCGAGCTAGACATGAAGGTGTGTGAGATCTTGGTCATCGACATATACTAT
CATATGAGAGATGCCTTACATGTAGAGAAGCAATCAAGCCGAGGCTGTAA
AAGCAACAGTACTGCCAAGGGGTATACGCTCGTGCATCTGGTACTACTAC
TACTACTACTAGTGGAAGAAGGAGTGTTTGTTCTTTACACTATATAGTAC
GTGCAGCACCAAGCTGCAGCTAGGTTTGTTTTACGAGCACAACAGACGTA
GTAGTTCAATTACAGTAGTAGTACACCAACATACTGGTATAAATGGTATG
ATTGATAGTACGTGTTACAGATTTTTTTTTTTTTTTCCGTTCCATTTATT
GTCTCATCACCCTATTCTTTTTCTAGCCCCATCTCTCTTCGTAACTCAGA
TCCGGGGTCACATGGTAGGCAATCCTCCCTCCTTCCCGCTACGGTACATG
CCTACATTTTTATCGCGAGAAGAGTGCAGCACTTTCTTCCCTCGTCGATT
TTCATCAAATTGTGCTTATACTCACGCTCTCACGTTTTCCGCGACGGAAG
ATTGCACAGAAAAGTGCCACCGGGAATCGAACCCCCAACTTCCGCCAACA
GAGGCAACACCCAAACCATTAGACCACTGCGCCACCCCTACACTATGTGT
CGAATTATAGCAAGTACGTGGCGTCGATACATCAACAGTTGTACAGAACG
CCCTCCCCAAAGAGCAACCGACATCTCCCAAGCTTATAGGTCACCTTAGG
ACATGACTCCCGGTACAGTCAGTAGGTATGATACATGATACACAACTTGT
ACCGTAGGAGATACGATACTATATTGCGAGCTACTAGAACAGACTATATT
TCTGTTTTTGTACTACCAGGTATTATAATACTGTCTGTTGTACAACTGGA
AGAGTAGTATGACTACAAGTTGCAGTACTTGTAGTACTCATATACGTATA
TCCGTGCTGGCGAATAGTAAATATATGATAGTGGAACACAAACGCACAAC
CTCTCTGTACCCCCCCCCCCCCCCCCGGCCTGCAGGGAGTACTCGACCGC
CGGAAGGAAGGTACAACGCAGGCCATAGCGTTCCCTATCTCTTCGAAAGC
ACGATGCGGAGGCAGGTTGGGTGT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig961:15819..17042+

>mRNA_D-herbacea_M_contig961.16089.1 ID=mRNA_D-herbacea_M_contig961.16089.1|Name=mRNA_D-herbacea_M_contig961.16089.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=408bp|location=Sequence derived from alignment at D-herbacea_M_contig961:15819..17042+ (Desmarestia herbacea DmunM male)
CGGGCGCACACGGATGCGAGGCATCCCTCTCGAAGTGTGAGAAGAGCGAG
CCCACAAAGAAAAGCTCTTGCTTACCGTCTTCAGCAGTCATTCCTCGTGG
TCGAGCTAGACATGAAGCGGGCGCACACGGATGCGAGGCATCCCTCTCGA
AGTGTGAGAAGAGCGAGCCCACAAAGAAAAGCTCTTGCTTACCGTCTTCA
GCAGTCATTCCTCGTGGTCGAGCTAGACATGAAGGGAGTACTCGACCGCC
GGAAGGAAGGTACAACGCAGGCCATAGCGTTCCCTATCTCTTCGAAAGCA
CGATGCGGAGGCAGGTTGGGTGGAGTACTCGACCGCCGGAAGGAAGGTAC
AACGCAGGCCATAGCGTTCCCTATCTCTTCGAAAGCACGATGCGGAGGCA
GGTTGGGT
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