mRNA_D-herbacea_M_contig960.16087.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig960.16087.1
Unique NamemRNA_D-herbacea_M_contig960.16087.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig960.16087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig960contigD-herbacea_M_contig960:19671..20246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935792.2741606-CDS-D-herbacea_M_contig960:19670..199581622935792.2741606-CDS-D-herbacea_M_contig960:19670..19958Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig960 19671..19958 +
1690880706.1935022-CDS-D-herbacea_M_contig960:19670..199581690880706.1935022-CDS-D-herbacea_M_contig960:19670..19958Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig960 19671..19958 +
1622935792.2929564-CDS-D-herbacea_M_contig960:20158..202451622935792.2929564-CDS-D-herbacea_M_contig960:20158..20245Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig960 20159..20245 +
1690880706.2039142-CDS-D-herbacea_M_contig960:20158..202451690880706.2039142-CDS-D-herbacea_M_contig960:20158..20245Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig960 20159..20245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig960.16087.1prot_D-herbacea_M_contig960.16087.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig960 19671..20245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig960.16087.1

>prot_D-herbacea_M_contig960.16087.1 ID=prot_D-herbacea_M_contig960.16087.1|Name=mRNA_D-herbacea_M_contig960.16087.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=125bp
ESGEIVNRSSAARGKHVLSGFVGVGAPGKIRGSNIASAAAASAVDTEPCV
AVSTTGSAAPKRAYELTDFATLGACLKKEKLQITEHAGAIRISLKARKAE
HERKINKDRVEEAKLVRTLQKLRKK
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mRNA from alignment at D-herbacea_M_contig960:19671..20246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig960.16087.1 ID=mRNA_D-herbacea_M_contig960.16087.1|Name=mRNA_D-herbacea_M_contig960.16087.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=576bp|location=Sequence derived from alignment at D-herbacea_M_contig960:19671..20246+ (Desmarestia herbacea DmunM male)
GAGTCTGGCGAGATTGTGAATCGTAGCAGCGCCGCAAGAGGAAAACATGT
CCTATCTGGGTTTGTAGGCGTCGGAGCTCCCGGTAAGATCAGGGGCTCTA
ACATTGCTTCAGCTGCTGCCGCCTCTGCCGTTGATACTGAGCCCTGTGTT
GCTGTATCCACTACCGGGTCGGCTGCGCCGAAAAGGGCGTACGAGCTGAC
CGACTTTGCCACTCTTGGAGCCTGCTTGAAGAAGGAGAAACTCCAAATCA
CGGAACACGCTGGAGCTATACGGATATCACTCAAAGCGGTAGGTGTATAG
AGAGTGGTTGTTGTGTTAGTGACTTGTGTACCGAGTTTGCTGCGGCCGCG
GAGCAGGCCGAGCATCGCATTCTGTCTAGACGGCTTGTTATGGGTTGACT
TCACGTGGTTTATGTGAAGTGGAAAAACATTTGCCATCGGTTCACTTTTT
CGTTCGTCTCGTGCTTTTGCGTTTTCACGACAAAGCAGAGGAAGGCAGAG
CACGAGAGAAAGATAAACAAGGACAGGGTGGAAGAGGCTAAGTTGGTCAG
AACGCTTCAGAAGCTAAGGAAGAAGA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig960:19671..20246+

>mRNA_D-herbacea_M_contig960.16087.1 ID=mRNA_D-herbacea_M_contig960.16087.1|Name=mRNA_D-herbacea_M_contig960.16087.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=750bp|location=Sequence derived from alignment at D-herbacea_M_contig960:19671..20246+ (Desmarestia herbacea DmunM male)
GAGTCTGGCGAGATTGTGAATCGTAGCAGCGCCGCAAGAGGAAAACATGT
CCTATCTGGGTTTGTAGGCGTCGGAGCTCCCGGTAAGATCAGGGGCTCTA
ACATTGCTTCAGCTGCTGCCGCCTCTGCCGTTGATACTGAGCCCTGTGTT
GCTGTATCCACTACCGGGTCGGCTGCGCCGAAAAGGGCGTACGAGCTGAC
CGACTTTGCCACTCTTGGAGCCTGCTTGAAGAAGGAGAAACTCCAAATCA
CGGAACACGCTGGAGCTATACGGATATCACTCAAAGCGGAGTCTGGCGAG
ATTGTGAATCGTAGCAGCGCCGCAAGAGGAAAACATGTCCTATCTGGGTT
TGTAGGCGTCGGAGCTCCCGGTAAGATCAGGGGCTCTAACATTGCTTCAG
CTGCTGCCGCCTCTGCCGTTGATACTGAGCCCTGTGTTGCTGTATCCACT
ACCGGGTCGGCTGCGCCGAAAAGGGCGTACGAGCTGACCGACTTTGCCAC
TCTTGGAGCCTGCTTGAAGAAGGAGAAACTCCAAATCACGGAACACGCTG
GAGCTATACGGATATCACTCAAAGCGAGGAAGGCAGAGCACGAGAGAAAG
ATAAACAAGGACAGGGTGGAAGAGGCTAAGTTGGTCAGAACGCTTCAGAA
GCTAAGGAAGAAGAGGAAGGCAGAGCACGAGAGAAAGATAAACAAGGACA
GGGTGGAAGAGGCTAAGTTGGTCAGAACGCTTCAGAAGCTAAGGAAGAAG
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