mRNA_D-herbacea_M_contig96.16051.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig96.16051.1
Unique NamemRNA_D-herbacea_M_contig96.16051.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.910e-18
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:  139 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARKHGCLWDEGTCWAAA 450
            EN  +TN D++H + +FV D+Q+LFFA VS SWR+AWG+ R  VTS+VT  +   QL YS  C L  D  + C T +R G L LL+ A + GC W      AAA
Sbjct:   16 ENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGE-RATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPWTRSLSAAAA 118
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.210e-18
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:  115 SSSIIATMENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARKHGCLWDEGTC 438
            +++  A ++NPL  N D++  + +FV D Q+LFFA VST WR AWG+ RP  T  +T     SQL +S  C L   R E+C  I+  GKL++LK AR+  C W   TC
Sbjct:   22 AAAAAAAVDNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGR-RPTSTRAITEHVTPSQLCWSFSCGLR-KRAEVCEAIAGFGKLEVLKRARELKCPWGRSTC 127
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.240e-17
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:  136 MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARK-HGCLWDEGTCWAAAMEG 459
            M NPL+   D++  + EFVG  QY+FFA VS +WR+AW + RP  T   T  + V QL  S KC L   R  +CR I+ LG+L LL  AR+ H C WDE TC  A+  G
Sbjct:    1 MPNPLM-QPDIVFRLMEFVGGEQYIFFAGVSRTWRDAW-EGRPTTTRAFTADTGVPQLSQSFKCGLA-PRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENG 106
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.390e-13
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  184 EFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARK-HGCLWDEGTCWAAAMEG 459
            EFVG  QYLFFA VS +WR+AW + RP  T  VT  + V QL  S +C L   R  +C+ I+ LG+L LL  AR+ + C WDE TC  A+  G
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAW-EGRPTTTRAVTADTGVPQLSQSFECGLA-RRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENG 92
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.990e-11
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  184 EFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRP----EICRTISRLGKLKLLKCARKH-GC 417
            EFVGD+QYLFFA VS  WR+AWG  RP VTSY T ++ +SQL +SL C L  ++      +  +++R G + LL+ A K  GC
Sbjct:    3 EFVGDKQYLFFAPVSQDWRSAWGG-RPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKKLGC 84
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BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-5
Identity = 40/107 (37.38%), Postives = 49/107 (45.79%), Query Frame = 1 
Query:  139 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVTRFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARKHGCLWDEGTCWAAAMEG 459
            EN  VTN D++  +  FV D+Q+LFFA VS SWR   G  R        RF+          C L     + C T +R   L LL+ A K G  W      AAA EG
Sbjct:   19 ENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSGR--------RFA----------CGLARGGVDWCSTTARAVNLDLLRWATKQGYPWTRSLS-AAAAEG 106
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FH49_ECTSI1.910e-1847.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFW3_ECTSI2.210e-1843.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM75_9PHAE7.240e-1746.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI4.390e-1348.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGC4_ECTSI1.990e-1148.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDL5_9PHAE2.170e-537.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig96contigD-herbacea_M_contig96:438379..442155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size564
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig96.16051.1prot_D-herbacea_M_contig96.16051.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig96 441727..442155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935786.9258378-UTR-D-herbacea_M_contig96:438378..4384591622935786.9258378-UTR-D-herbacea_M_contig96:438378..438459Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 438379..438459 +
1690880703.3622944-UTR-D-herbacea_M_contig96:438378..4384591690880703.3622944-UTR-D-herbacea_M_contig96:438378..438459Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 438379..438459 +
1622935786.9479334-UTR-D-herbacea_M_contig96:441672..4417261622935786.9479334-UTR-D-herbacea_M_contig96:441672..441726Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 441673..441726 +
1690880703.3726532-UTR-D-herbacea_M_contig96:441672..4417261690880703.3726532-UTR-D-herbacea_M_contig96:441672..441726Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 441673..441726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935786.9712043-CDS-D-herbacea_M_contig96:441726..4421551622935786.9712043-CDS-D-herbacea_M_contig96:441726..442155Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 441727..442155 +
1690880703.381917-CDS-D-herbacea_M_contig96:441726..4421551690880703.381917-CDS-D-herbacea_M_contig96:441726..442155Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 441727..442155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig96.16051.1

>prot_D-herbacea_M_contig96.16051.1 ID=prot_D-herbacea_M_contig96.16051.1|Name=mRNA_D-herbacea_M_contig96.16051.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=143bp
MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGKHRPKVTSYVT
RFSVVSQLLYSLKCDLPWDRPEICRTISRLGKLKLLKCARKHGCLWDEGT
CWAAAMEGHLHVLQWVHEEGCPWDGTTCSAAAGSGNLDVLQWA
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mRNA from alignment at D-herbacea_M_contig96:438379..442155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig96.16051.1 ID=mRNA_D-herbacea_M_contig96.16051.1|Name=mRNA_D-herbacea_M_contig96.16051.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3777bp|location=Sequence derived from alignment at D-herbacea_M_contig96:438379..442155+ (Desmarestia herbacea DmunM male)
ACTTTGCACAGCACCTTGATGAAGCTTTGGTGTTTGGACGGCCTGGCTTA
GTTCCGCCCATAGTTTTCCGGCGGCAAGTAGGTGAGGGATACTAATTGTC
ACACAATCCTGGTGTTGTTGTCGTGTTTGGCACCTTGTGTCCCTGGCAGA
TTCGGGTGTACAACACACTGATATGGTTGACATGAAACTCGTGTCTTGGA
GCAATCAAGACACGCGATGGGAGGAGAAGGAGGAGGAGGACATGACATTG
CCCACATGATGCACCGCTCGTTCCACAGCATGACCGCGTGTCGTGGATGC
TGCATGATGCCCATGCCCACGGGGAGCTTATTTCTATACCGTACATACAA
TATCGCGATAGATACGATCGTGGTATAGTGTGGACTACAGTACTACTACA
ACAGTAGTAGTACTCACTACTCTTGGTGTGTTTACTCCTGAGCAGTGAGT
GTACGCTGGTGCTGCCTTATTACTGTACGACCGTGTTGCCCCCCTCCCCC
TGGGGACCCCATGCGTGTGTATCCATGGCGAGATCTAGAGACGAAGCGGG
GCTGCAGCTGCAGCTGTAGCTGTAGCTGACGATCGGGTATAAAGTATCTA
TCATCCCATTATTGTCTTTTTCGTTTGGTCCTTTTTTGGTTTCTTGGTTG
CTGACTTCTTTCGTTGAGAGTTTCTTTCGAGTCTGTGAAATATCTTATTT
TTCCTGCGAAAGGGCCCGCCCTCCTATTAATAGGAGGGCACTGCTCTTTC
TCGTTTGTATGTTTTGCTTTGTTTTCCTTTGTTTTTCCTTCTGGAGCGTT
ATTGTGCCGGGTTTTGTGACCACGGGCGATATCTTTTGAGATGAGCTATT
GTGAGAAACAACGACAAGTACTGTGGTACTGTACTGCTGTTGTACTGGCT
GTTGTGTAAAGAACTCGTACTCGTATGAAAGTTCCTGTTTTAAGCCCGCT
TTTAGGGGCTGCTGTCGACAGTTGTACAACAGTACACCGCATCAAGGCTT
CAGATGGGGCGGAGGCGCGTGGTGCTCACCCCGCAAGGCCGTACCCCGCG
CAGGGGCCGCCGGAGGCAAAATTAAAGTTTTGCGAGATATTAGCGTAAAC
ATACGTCAGAAAATCACTTTAAAAAACGCATTTTGCCGGCCCTTTTACTG
CTCGTAGTGACCTAAATAAATCCCTTTGCTGTTTAGGGCCTGTCGTGACA
GTTTTTTTCCGCTGCCCAAATTCAGATCTAAAGTTATTCTGGGCGCTGAT
TGGCCGATGTCCAGAACAGACTTTAATATTCTGAGATATATTGGAAGAGT
CATCTCACTCTCAAAATCAATGTTTCGCGAGGTCAGCATTAAAATGCAGT
GTAAAAATATGAAGCGCAACATGGGCCAGTATTCGTGATATGAGTACGGC
TCGTATCCGTCGGTTGCAGTTTATCACAGAATAAAGATACGGACTTCTCC
CTGTCTCTGGTAACGAAAACGTATCGTTCCACAGGGCGTATCGCTCACAA
GATATAATGAGCGGTATATATTTGTTCGTCCTTCTTCACCGTTCCTCCTC
CTCACTTAGTCGAGATTCTCACACTTCGAGTCACACTAGTAGAACGGATA
AGGCAACAGAAGACGAAGTAGACGTACAAGTGTCATGGATCGTCGCTCAT
TAATATTCTGCCCTCGCGTCCATACTCCCGTTCCCATATGAAACTGTCAT
ATCCACGAAGCGACATTTATTGTGCCGCTGAACTAAGCATCCATACTGTC
CATGGTGTACTTGCAGAGTATAACCACTAACAGCCAGAAAGTGTGTGGTG
CTCAGAGTAATAGTTGTTGTGGGAGGTGTACCTAGACCTACAGGTACGTC
GCCACGGCGACACCCACAGAAAGCCCACGGAGACATACGAGATATTGCAC
GATAGGTGATGATCAGCTGCAACCGGCATGCCACGCTTGAGCTAAATCCA
TGCAGTATCGGAGGAGTAACACCTATTCGCGTGAACTTGTCTCGTTATTT
TTCAGCCAAACACGTGTTCAAGTGACTGTTTGTTTTGCTTTGCCACGTCG
TCGCTAAGAACAGCGTTGCTCCTGCGATTCGAGGCGTATTGAGTCCGAAC
CAATTACATCGTCCTCGTCTGATCAAGGGATAACTCGCAAGCTGTCAAAC
ATTGCTTTGGGTGCAGTGTGACTCTCGCAGTGCACGTTTTGGTGCAGTCA
GATGGTGTTTTTGTTATATCGGTAGTATTTTCCGTATGTGGTGCGTCTCC
CATATTTTAATCGGTTTTGTAACAAGACTTACCGGGCCCAGATCGCCCAA
ATCAAAGGGGCTTTGTATTTGAATTTGATCGGCGGACGACAAAGTGTTAA
GACAGGCCCTTGCTCTTTTCCAAGTTATTTGTCCCACAATGAAAAAGCAC
GGTTTTCAAATTTGATATGGGTATTTTAAGGTTAGGTACACCATTTCGAC
GTACTTCACTCAGAAATCGGTTGATATTTGATGTGTTGGTATCGAGATTC
GAGTTCTCCTTCCTTGCAGCCTGCTCCACAAAACAGAGAAATACAAAAAT
AACCCCAGCTAGCTGTGCCCCTCCAGGATACAGGACCCCACCCGCCCTCA
ACCTTGCTATTATACTCTGCCGATATTACACGTCACATTTTGACTGCAGT
AGCCAACAATTATGTCGTTTGGATGTGAACTTAGTAGCCGTCTTGTTACT
TGCGCCTATCTTACTTCTGGTCGAAACTAACCACGACTTCTCTGACGGTA
TCGTCCGATTATTCAGCCGTGAGATCAATGCCCTGCTGCTTGTGCAGCAA
AGAGATAGTCGCATCAACAGCTCAACTCGTGCCACCGAAAGGTTGTTACG
GGTCTTCAATTTGATTATGTTCTGGGCCGAGAACCCGTGTTCGCTCGCGA
TAGACGAGTGCCGCTGTACCATATAAACCTTGACTAACTTGTACAGGTCA
AGGTTTATATTGTACAGACACACTCGTCTATCGAGTTACCTGCCAGTCAC
AAAACTGCATTGCCATTTACAGTTCCTCGGCAGGAATTCGTGGTAGAATA
ATGAAAAAATAACTCACCTTTTGTCGCCTACGCCGCAAAAGCAAAAAGTG
CCTACAATTTGTTTTCCGCCTGGCCTTAGTTGTTTTTCGCCTTGACTACA
TGCCACCGAGTGATTGCTGCCACTGGTGTTCCGTTCTCAAAATGTTGGCA
TGGCAACGGATACTATCGTTTCCGGCAAGCTGTAACAGTACAAGTGGTCA
TATCGCGTTGTCGATCCTTGTTTCTCCACGAACACGTACTGCAGGCGACC
CCCGCAGTATTTTTGTTATCAAGCACATCATCATCGATTATCGCCACCAT
GGAAAATCCACTGGTGACCAACGCGGACATGATCCACCTCGTGAGAGAAT
TCGTCGGCGACAGGCAGTACCTCTTCTTCGCGATGGTGTCCACATCATGG
CGAAACGCGTGGGGGAAACACCGCCCGAAGGTCACGAGCTATGTGACACG
TTTCTCCGTGGTGTCCCAGCTGTTGTACAGCCTCAAGTGCGACCTCCCGT
GGGATAGACCCGAGATTTGCCGCACAATTTCGCGTCTCGGAAAGCTGAAA
CTCCTGAAATGCGCACGCAAGCATGGCTGCCTCTGGGACGAGGGTACGTG
CTGGGCGGCTGCCATGGAGGGGCACCTACACGTCCTGCAGTGGGTGCACG
AGGAGGGCTGCCCGTGGGACGGGACTACCTGTTCCGCGGCTGCCGGAAGC
GGCAACCTGGATGTCCTTCAATGGGCG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig96:438379..442155+

>mRNA_D-herbacea_M_contig96.16051.1 ID=mRNA_D-herbacea_M_contig96.16051.1|Name=mRNA_D-herbacea_M_contig96.16051.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=858bp|location=Sequence derived from alignment at D-herbacea_M_contig96:438379..442155+ (Desmarestia herbacea DmunM male)
ATGGAAAATCCACTGGTGACCAACGCGGACATGATCCACCTCGTGAGAGA
ATTCGTCGGCGACAGGCAGTACCTCTTCTTCGCGATGGTGTCCACATCAT
GGCGAAACGCGTGGGGGAAACACCGCCCGAAGGTCACGAGCTATGTGACA
CGTTTCTCCGTGGTGTCCCAGCTGTTGTACAGCCTCAAGTGCGACCTCCC
GTGGGATAGACCCGAGATTTGCCGCACAATTTCGCGTCTCGGAAAGCTGA
AACTCCTGAAATGCGCACGCAAGCATGGCTGCCTCTGGGACGAGGGTACG
TGCTGGGCGGCTGCCATGGAGGGGCACCTACACGTCCTGCAGTGGGTGCA
CGAGGAGGGCTGCCCGTGGGACGGGACTACCTGTTCCGCGGCTGCCGGAA
GCGGCAACCTGGATGTCCTTCAATGGGCGATGGAAAATCCACTGGTGACC
AACGCGGACATGATCCACCTCGTGAGAGAATTCGTCGGCGACAGGCAGTA
CCTCTTCTTCGCGATGGTGTCCACATCATGGCGAAACGCGTGGGGGAAAC
ACCGCCCGAAGGTCACGAGCTATGTGACACGTTTCTCCGTGGTGTCCCAG
CTGTTGTACAGCCTCAAGTGCGACCTCCCGTGGGATAGACCCGAGATTTG
CCGCACAATTTCGCGTCTCGGAAAGCTGAAACTCCTGAAATGCGCACGCA
AGCATGGCTGCCTCTGGGACGAGGGTACGTGCTGGGCGGCTGCCATGGAG
GGGCACCTACACGTCCTGCAGTGGGTGCACGAGGAGGGCTGCCCGTGGGA
CGGGACTACCTGTTCCGCGGCTGCCGGAAGCGGCAACCTGGATGTCCTTC
AATGGGCG
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