mRNA_D-herbacea_M_contig96.16045.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig96.16045.1
Unique NamemRNA_D-herbacea_M_contig96.16045.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.800e-19
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  436 MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARK-HGCLWDDGTCWAAAMEGHLHVLQW 780
            M NPL+   D++  + EFVG  QY+FFA VS +WR+AW + RP  T   T  + V QL  S  C L   R+ +CR I+ +G+L+LL  AR+ H C WD+ TC  A+  GH  VL+W
Sbjct:    1 MPNPLM-QPDIVFRLMEFVGGEQYIFFAGVSRTWRDAW-EGRPTTTRAFTADTGVPQLSQSFKCGLA-PRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRW 113          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-17
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  430 ATMENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTC 738
            A ++NPL  N D++  + +FV D Q+LFFA VST WR AWG+ RP  T   T     SQL +S  C L   R E+C AI+  GKLE+LK AR+  C W   TC
Sbjct:   27 AAVDNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGR-RPTSTRAITEHVTPSQLCWSFSCGLR-KRAEVCEAIAGFGKLEVLKRARELKCPWGRSTC 127          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.220e-17
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  439 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTCWAAA 750
            EN  +TN D++H + +FV D+Q+LFFA VS SWR+AWG+ R  VTS+ T  +   QL YS  C L  D  + C   +R G L+LL+ A + GC W      AAA
Sbjct:   16 ENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGE-RATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPWTRSLSAAAA 118          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.720e-15
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  484 EFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARK-HGCLWDDGTCWAAAMEGHLHVLQW 780
            EFVG  QYLFFA VS +WR+AW + RP  T   T  + V QL  S  C L   R+ +C+ I+ +G+L+LL  AR+ + C WD+ TC  A+  GH  VL+W
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAW-EGRPTTTRAVTADTGVPQLSQSFECGLA-RRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRW 99          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.220e-15
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  436 MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTC 738
            M+  L   +D+   + EFV   Q+LFFA V  +W+ AWGQ RP  T   T  + V+QL  +  C L     ++C +++++G+L+LL+CAR+HGC W++ TC
Sbjct:    1 MDAALFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQ-RPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 7.280e-13
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  484 EFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRT----EICRAISRVGKLELLKCARKH-GCLWDDGTCWAAAMEGHLHVLQW 780
            EFVGD+QYLFFA VS  WR+AWG  RP VTSYAT  + +SQL +SL C L  ++      +  +++R G + LL+ A K  GC         AA  GHL  L W
Sbjct:    3 EFVGDKQYLFFAPVSQDWRSAWG-GRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKKLGCRLMSRFFVVAAGCGHLDALIW 105          
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.790e-5
Identity = 37/107 (34.58%), Postives = 46/107 (42.99%), Query Frame = 1
Query:  439 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTCWAAAMEG 759
            EN  VTN D++  +  FV D+Q+LFFA VS SWR   G  R                     C L     + C   +R   L+LL+ A K G  W      AAA EG
Sbjct:   19 ENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSGR------------------RFACGLARGGVDWCSTTARAVNLDLLRWATKQGYPWTRSLS-AAAAEG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JM75_9PHAE2.800e-1944.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW3_ECTSI1.010e-1747.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH49_ECTSI2.220e-1745.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8W5_ECTSI1.720e-1546.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI2.220e-1539.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGC4_ECTSI7.280e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDL5_9PHAE4.790e-534.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig96contigD-herbacea_M_contig96:346801..350964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.5e-08
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size780
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig96.16045.1prot_D-herbacea_M_contig96.16045.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig96 346801..347145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935785.5076034-CDS-D-herbacea_M_contig96:346800..3471451622935785.5076034-CDS-D-herbacea_M_contig96:346800..347145Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 346801..347145 -
1690880703.0245295-CDS-D-herbacea_M_contig96:346800..3471451690880703.0245295-CDS-D-herbacea_M_contig96:346800..347145Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 346801..347145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935785.5221205-UTR-D-herbacea_M_contig96:347145..3471961622935785.5221205-UTR-D-herbacea_M_contig96:347145..347196Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 347146..347196 -
1690880703.0369697-UTR-D-herbacea_M_contig96:347145..3471961690880703.0369697-UTR-D-herbacea_M_contig96:347145..347196Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 347146..347196 -
1622935785.542011-UTR-D-herbacea_M_contig96:350580..3509641622935785.542011-UTR-D-herbacea_M_contig96:350580..350964Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 350581..350964 -
1690880703.0469058-UTR-D-herbacea_M_contig96:350580..3509641690880703.0469058-UTR-D-herbacea_M_contig96:350580..350964Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 350581..350964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig96.16045.1

>prot_D-herbacea_M_contig96.16045.1 ID=prot_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=115bp
MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYAT
RCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGT
CWAAAMEGHLHVLQW
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mRNA from alignment at D-herbacea_M_contig96:346801..350964-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig96.16045.1 ID=mRNA_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=4164bp|location=Sequence derived from alignment at D-herbacea_M_contig96:346801..350964- (Desmarestia herbacea DmunM male)
ATAAAACCCTGTTATCTTCTGAAGTGCATGCAATAACTAGGGCAATCCCG GCGCGGCCGCCCCTTGCCAGGGGCGGGTCCTGCATGTCAACGAGAAATAC CCAAGACCTCCTTAGTCAACGAAACACAAACGTCGTCTATGTCCGTTTTT TTTGTCATGGTTCAGTCATCATGCTCCCGGGCTCTCAGGTTGTTGTGCTC TACGTGCAATAGCAAAGCAGATATCATCATACACCGGCGCCAAGAGACAA CGACACTCGCGTGGCCCAACTTCACCATCATACATCCGCACTGGGTGGCT CTAGCGAAGGACAGCCTGCACCTTGTTGCCTGTACTACAGCAGCAGCAGC AGCAGCAGCAGCAGCACAACATCAGAAGTAGTAGGTACGAGTAACTACAC TACTGTTTTCGAAGAAAGGGCATATAGACTATAATACAAGCACAGCAGAG TAATATGATACTTCAAAAACTTGAAGTACAGCAGCAGTATACTCATACGA AGTAGTATGGATACAAAAAACGTACTTCTTTCTGACGAAGAGGCTATTTT ACAGAGTAAGTCCCTCGAGCGGAGTACGTATTTGTACTCGAACCCATCCA ACCTACCTGGGCACTCTCGCCCACGCTCGTACTGCTGTGTGTGCTTTCGG CAACGCCAGCTCCGCCAATAGAGGTTGACGGCCCATCTGGCGAAGAGCTA CCACCTAAAGCGGAGCCATGCGTACGCGAGGAGCCTGACTTGACCGCGCA CCTTGACAAGAGGTGTCTACGTATTTTCACAGAACCTGCGAGTTTCCCTT CCCGCCATCGTCGTTGCTTGGGGAGCACACCTTTTGCCCCGTACCGTTTA TTGTTCTCTATCGCTCCTCCCGTCTTGCCCTTCTTGTTCCCTCCTTGTGC TTTTGACCTATGCTCGAGGGTTAGGGTGAACCCAATGCTCGCTGTTTATC TACTAGCTAGTTGGTACCCATCACCAGTAGAATTTTCTTGAAAATATAGA TACACACCCTTTTGGTAGTAGTGCAGGTTGCGGATTAAAATAAAGTTTCT ACCGTACATAAGTTTCTTAGAGTTTTCTTGTGAATAATTTGTTCATTTCG GCGGAATTAACTCACTTTTGGGTGGTTTGTCGACCAATTTCTCGACGTTG GCAACATTTCACGCTTACGAAAAGAACGTATATATCTGCATCAAAGCTAG GGCTATCCAGCGAGATAATCGGCATTCGAAAAAAAGGAAATGGCGTTGAC TTTCCGTGCACGATTGATTTTTATTCCTAGCTACTTCGAAGTAGAAGTAT ACTGATAGATATTTTCATATTTAATTTTGTCTTCAGTACGCTCCCCCCCA TCGAACACCACCAAGGGCCTGCCGCCCGCCTCAATTGCAGCACCTCTTTT CGACGAAGACCGCTAGCACGGCTGTCTGTGAGAAGCTCAACGACCTCCTC TTCGTCGTTGGTCCATGGGTTGGTTGGTGTAAACACGGCGCAGACGCTGC AGTATAATAGCATATTATTACAGACAGCATTATTATATTGTTGTCTTTGC CTACGCCACCCGAACTCTTGGCATTCGCATCAAGCACATTTCCCCCCTGT ATTAAACCTACACCAAATGCTTAAGGGGATCACGCGAAGCTGGGTGGCCG GCAGGCCACCCAGCGAAGACCCCTTGTACCGTATACGGAGTATGTCTTTC GACCACAGATAGATATCTAGATAGCATTGTTAGCAGCTAGGAGATTGGGG CAAGTACCCTTGTTGTTTGTTGTTGTTGTTATTGTTGTTGTCTTCGCACA TTAAAGAGTTGTCCTTTCTATCATATCCTACGACGTCCAGTAGTTGCGTA CTCAGAGTCTACACTAATTCTTCTATCCCAGAGAGATTCTAAATTCCCTG GTCACAAGCTGTATAAATAGCACCGATTCGCAAAACACAAAGAGACAAAG AAAAAGATATAAAACAATTTGTTTTTGTTTGTTGTTTTTTGTGTGTACGA CTGCCGCCTCCTGTCAGGATGTATTATTTGTTGGGTTGCGTTGGGTTGGG TTGAGTAATTTGACTCACCCTTCGAGCACATATTGCACAGGCAACGCCGT GGTTTATTTTTCTAGATTAGACTATATCTATTGATAAGAGCATTTTTCGC AGGAGATTAGAAAAATTACACTTTTTTTGTTGTTGTTATCGCCTACACTT TACAAATCGACTGTCTACCCTACGACATCCGGTAGCGTATTCAGGGTCTG TACTGACCCTTCCATCATAGATAGATTCAAAATCCCGTGGTCAAAAGCTA TATAATAGCATCAAATCGCAAATTGAATAGAATAGCAAGGACGATAACTA AAATTTGAGTATGCGACTGCGGCCATATTATCATTAGTTTTGCAACAGAT ATTATAGAGTTGACATTTCGGTGGAACATATAGTTAATATACGAAGTAGG TTCAAATATTCCCGTCCAATATGACGGACTCGTCTAATGTATAATATTTC CAACTGGCCCGCCTGATTCGGCCCTTGCTCCTCACATCTCGGTTCGAATC CGACCAATAGACGCATGCCGGACCACCCTTTCTAACTATTCTGAACGATG CCGGCCCTACTGGCCCACCCTACAACATGTTAACCGACGTGCTGAAAGAA ACGCGTCCCGAACATTTAGTCAAATGGTCACTTCTCGATACCACAGTTGT GCAAAACTCGTTGTAGTGCAACGGCGTACGGATGTGCATCGATAGGCGAA ATCTTGTTCAACACCATCGGTTCGATTTGCTGGTGGCTTATCGAGCACTC GTTTTCAACGTAAGAGCGTGTAGGTGTAGTTGCCTCGATACTAAAAACTC TATTGTACGGTGCCTTCTTTTCAGTACGAAAAACGCCTACGGGGCAAACA TTCTTCAAAACACTGACGATTTTCGAATACAGAGGCTTCTCATACTGGGC AACAAGAGATCCCACCAGAGGTTTTGATAGATAGACCTACAGTCCAACAG TAGTAGTAGTAGTAGTAGTAGCGTTCTGTGTCGTCCCCGACATTCGAGAC CAAAAATATGCGCAGCATGAGAAACACCGTCTTTGGCGTGTGTCCCTTAG GTTTTAGAGTATTCTTGTGTTGTGGACGTTTTCGTGCCAAATAAAGCACC GTAGAGCATAGGGGTTTTCGAGGCAAAAACATTCCTTTCAATACCAGCTT GGGAGGCCGTAAACACAAGTGCCACATTGTAAGTGATATACTTCGAAGTA CCTGTTTTGCCGTGGGTTCCAATGTTGGCTTGTTATGATTTTCTTATATT ATAGATTTATTTAAAAGTCACAGGTGCTTTTATTTCGGCCGAGAAGAAAA AGAAAAAAAATGTGACCAAGGTTGGAAGTCCAAACTCTACGGCTATGCGA CGAGTGGACGTCCTTCTTTGTTCCGGATGAGCGTGTGTTGTTCCCCAGTT TATGTGGACTACTGTTCTGTTGGTGGTTGTGCGAGAATAGTTATTGACAA TATCCTCTCCTGGATCTTGGGTCAATTTGGGGCATCCCCCGGTGTCCCGG CTGTTTATTTTTGTCAATAAAAATGTTGCTCATACAATACACCGCTGATT CCGCACGATGACAGCAATCGTGGACGTTGCATCAAGCTAATCCGGACTTC CGTTCTCAGAGTGTAATAATCTTTGTCGAGGGACAGTAACAGATGCTTTC CATTCAGGCAAGTTGCATAGTTGAATAACGTTGTCGATCCCTTGTTTCTC CACGACCACGTACTGCAGGCGACCCTCGCAGTATTTTTGTAAACAAGCAC ATCATCGATCATTGCCACCATGGAAAATCCACTGGTGACCAACGCAGACA TGATTCACCTCGTGAGAGAATTCGTCGGTGACAGGCAGTACCTCTTCTTC GCGATGGTCTCCACGTCATGGAGAAACGCGTGGGGACAAGACCGCCCAAA GGTCACGAGCTATGCAACACGTTGCTCGGTGGTATCCCAGCTGTTGTACA GCCTTGGGTGCGACCTCCCGTGGGATAGAACCGAGATTTGCCGCGCAATT TCGCGTGTTGGAAAGCTGGAACTCCTGAAATGCGCGCGTAAGCATGGCTG CCTCTGGGACGACGGTACGTGCTGGGCGGCTGCCATGGAAGGGCACCTGC ACGTCCTGCAGTGG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig96:346801..350964-

>mRNA_D-herbacea_M_contig96.16045.1 ID=mRNA_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=690bp|location=Sequence derived from alignment at D-herbacea_M_contig96:346801..350964- (Desmarestia herbacea DmunM male)
ATGGAAAATCCACTGGTGACCAACGCAGACATGATTCACCTCGTGAGAGA
ATTCGTCGGTGACAGGCAGTACCTCTTCTTCGCGATGGTCTCCACGTCAT
GGAGAAACGCGTGGGGACAAGACCGCCCAAAGGTCACGAGCTATGCAACA
CGTTGCTCGGTGGTATCCCAGCTGTTGTACAGCCTTGGGTGCGACCTCCC
GTGGGATAGAACCGAGATTTGCCGCGCAATTTCGCGTGTTGGAAAGCTGG
AACTCCTGAAATGCGCGCGTAAGCATGGCTGCCTCTGGGACGACGGTACG
TGCTGGGCGGCTGCCATGGAAGGGCACCTGCACGTCCTGCAGTGGATGGA
AAATCCACTGGTGACCAACGCAGACATGATTCACCTCGTGAGAGAATTCG
TCGGTGACAGGCAGTACCTCTTCTTCGCGATGGTCTCCACGTCATGGAGA
AACGCGTGGGGACAAGACCGCCCAAAGGTCACGAGCTATGCAACACGTTG
CTCGGTGGTATCCCAGCTGTTGTACAGCCTTGGGTGCGACCTCCCGTGGG
ATAGAACCGAGATTTGCCGCGCAATTTCGCGTGTTGGAAAGCTGGAACTC
CTGAAATGCGCGCGTAAGCATGGCTGCCTCTGGGACGACGGTACGTGCTG
GGCGGCTGCCATGGAAGGGCACCTGCACGTCCTGCAGTGG
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