mRNA_D-herbacea_M_contig96.16045.1 (mRNA) Desmarestia herbacea DmunM male
|
Overview
Homology
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.800e-19 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 436 MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARK-HGCLWDDGTCWAAAMEGHLHVLQW 780
M NPL+ D++ + EFVG QY+FFA VS +WR+AW + RP T T + V QL S C L R+ +CR I+ +G+L+LL AR+ H C WD+ TC A+ GH VL+W
Sbjct: 1 MPNPLM-QPDIVFRLMEFVGGEQYIFFAGVSRTWRDAW-EGRPTTTRAFTADTGVPQLSQSFKCGLA-PRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRW 113
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 1.010e-17 Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 430 ATMENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTC 738
A ++NPL N D++ + +FV D Q+LFFA VST WR AWG+ RP T T SQL +S C L R E+C AI+ GKLE+LK AR+ C W TC
Sbjct: 27 AAVDNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGR-RPTSTRAITEHVTPSQLCWSFSCGLR-KRAEVCEAIAGFGKLEVLKRARELKCPWGRSTC 127
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.220e-17 Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 439 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTCWAAA 750
EN +TN D++H + +FV D+Q+LFFA VS SWR+AWG+ R VTS+ T + QL YS C L D + C +R G L+LL+ A + GC W AAA
Sbjct: 16 ENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGE-RATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPWTRSLSAAAA 118
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.720e-15 Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 484 EFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARK-HGCLWDDGTCWAAAMEGHLHVLQW 780
EFVG QYLFFA VS +WR+AW + RP T T + V QL S C L R+ +C+ I+ +G+L+LL AR+ + C WD+ TC A+ GH VL+W
Sbjct: 2 EFVGGEQYLFFAGVSRTWRDAW-EGRPTTTRAVTADTGVPQLSQSFECGLA-RRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRW 99
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 2.220e-15 Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 436 MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTC 738
M+ L +D+ + EFV Q+LFFA V +W+ AWGQ RP T T + V+QL + C L ++C +++++G+L+LL+CAR+HGC W++ TC
Sbjct: 1 MDAALFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQ-RPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 7.280e-13 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 484 EFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRT----EICRAISRVGKLELLKCARKH-GCLWDDGTCWAAAMEGHLHVLQW 780
EFVGD+QYLFFA VS WR+AWG RP VTSYAT + +SQL +SL C L ++ + +++R G + LL+ A K GC AA GHL L W
Sbjct: 3 EFVGDKQYLFFAPVSQDWRSAWG-GRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKKLGCRLMSRFFVVAAGCGHLDALIW 105
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 4.790e-5 Identity = 37/107 (34.58%), Postives = 46/107 (42.99%), Query Frame = 1
Query: 439 ENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATRCSVVSQLLYSLGCDLPWDRTEICRAISRVGKLELLKCARKHGCLWDDGTCWAAAMEG 759
EN VTN D++ + FV D+Q+LFFA VS SWR G R C L + C +R L+LL+ A K G W AAA EG
Sbjct: 19 ENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSGR------------------RFACGLARGGVDWCSTTARAVNLDLLRWATKQGYPWTRSLS-AAAAEG 106 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig96.16045.1 >prot_D-herbacea_M_contig96.16045.1 ID=prot_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=115bp MENPLVTNADMIHLVREFVGDRQYLFFAMVSTSWRNAWGQDRPKVTSYATback to top mRNA from alignment at D-herbacea_M_contig96:346801..350964- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_M_contig96.16045.1 ID=mRNA_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=4164bp|location=Sequence derived from alignment at D-herbacea_M_contig96:346801..350964- (Desmarestia herbacea DmunM male)back to top Coding sequence (CDS) from alignment at D-herbacea_M_contig96:346801..350964- >mRNA_D-herbacea_M_contig96.16045.1 ID=mRNA_D-herbacea_M_contig96.16045.1|Name=mRNA_D-herbacea_M_contig96.16045.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=690bp|location=Sequence derived from alignment at D-herbacea_M_contig96:346801..350964- (Desmarestia herbacea DmunM male)back to top |