mRNA_D-herbacea_M_contig959.16028.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig959.16028.1
Unique NamemRNA_D-herbacea_M_contig959.16028.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig959.16028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig959contigD-herbacea_M_contig959:11238..18101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size722
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig959.16028.1prot_D-herbacea_M_contig959.16028.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig959 11385..17940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.8242857-UTR-D-herbacea_M_contig959:11237..113841622935779.8242857-UTR-D-herbacea_M_contig959:11237..11384Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 11238..11384 +
1690880700.9828467-UTR-D-herbacea_M_contig959:11237..113841690880700.9828467-UTR-D-herbacea_M_contig959:11237..11384Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 11238..11384 +
1622935779.892704-UTR-D-herbacea_M_contig959:17940..181011622935779.892704-UTR-D-herbacea_M_contig959:17940..18101Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 17941..18101 +
1690880701.0479088-UTR-D-herbacea_M_contig959:17940..181011690880701.0479088-UTR-D-herbacea_M_contig959:17940..18101Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 17941..18101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.8376427-CDS-D-herbacea_M_contig959:11384..114461622935779.8376427-CDS-D-herbacea_M_contig959:11384..11446Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 11385..11446 +
1690880700.9955282-CDS-D-herbacea_M_contig959:11384..114461690880700.9955282-CDS-D-herbacea_M_contig959:11384..11446Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 11385..11446 +
1622935779.8561254-CDS-D-herbacea_M_contig959:11912..121191622935779.8561254-CDS-D-herbacea_M_contig959:11912..12119Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 11913..12119 +
1690880701.0139322-CDS-D-herbacea_M_contig959:11912..121191690880701.0139322-CDS-D-herbacea_M_contig959:11912..12119Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 11913..12119 +
1622935779.8693628-CDS-D-herbacea_M_contig959:12453..125911622935779.8693628-CDS-D-herbacea_M_contig959:12453..12591Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 12454..12591 +
1690880701.0250905-CDS-D-herbacea_M_contig959:12453..125911690880701.0250905-CDS-D-herbacea_M_contig959:12453..12591Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 12454..12591 +
1622935779.8809419-CDS-D-herbacea_M_contig959:17933..179401622935779.8809419-CDS-D-herbacea_M_contig959:17933..17940Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 17934..17940 +
1690880701.036437-CDS-D-herbacea_M_contig959:17933..179401690880701.036437-CDS-D-herbacea_M_contig959:17933..17940Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 17934..17940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig959.16028.1

>prot_D-herbacea_M_contig959.16028.1 ID=prot_D-herbacea_M_contig959.16028.1|Name=mRNA_D-herbacea_M_contig959.16028.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=138bp
MGSAGVILDSTGNGRKAMSLGASKDDASADGTVYHAAVVPRGPGGVVAAG
DEVGFAGPGESKRRRTADTGIPGIGSNGNNGNANDQQNDGANNGGNVASM
WSDGGKKRGADEMMPEVTGSGKRGCNDDAATFKSPRR*
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mRNA from alignment at D-herbacea_M_contig959:11238..18101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig959.16028.1 ID=mRNA_D-herbacea_M_contig959.16028.1|Name=mRNA_D-herbacea_M_contig959.16028.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=6864bp|location=Sequence derived from alignment at D-herbacea_M_contig959:11238..18101+ (Desmarestia herbacea DmunM male)
GGCAGCGGTGGTCTCCATAGTTCGTCTTCGACACCAGGAATCCATCAAAA
GCCGGGAGGTCGCCGCGAGGACGCCGCAGACGGTAGCCAACATGCGGAGA
GTTCGACAGACAGTACCGGTGACGGCAGGAAGCGATCGGCAACCCAAATG
GGAAGCGCTGGCGTCATCCTTGACAGTACAGGCAACGGCCGCAAGGCAAT
GAGTTTAGGGTGAGACATGTGTGCATCTCCACGATCGATCCGTTGGGGCT
ATTCTTGCAGGTTGATCTGCACCAACATCAAGGATCTGAGTGGCACCTTA
TACAATATGCACAACGTAGATAATTGTTCTCAGCGTTCAACCATTGTCTT
ATATTTTCGTAGAACGTAGGGAGTATGGTGCTGACGGCACCACGGACATC
GAAGGTGCAATTTGGGCAGATACTAGTTGCTTATATTCCAACGCACGTCA
TTTTGGCAAATGCATTCTATCGCATACACCGGCCATATTGTGTGTGCGAC
GGGGCTCGAAAGGCTGCTGAATCGCCAAAACCGAATTGATTCCTTTCTCG
GGGTACCGGGTTAAGGCTACCCCCTCCCTCTTACCCTACCCATATAGGCA
TTTTGCTGCTGCACGCGATTTATACCTATAGTCGGCCGCACTCTTCGTGT
CCCATTTCAATCAAATCCTTCACAGAGCGAGTAAGGATGATGCTTCCGCA
GATGGTACAGTCTACCATGCAGCGGTCGTACCGAGAGGCCCCGGTGGTGT
TGTGGCCGCTGGTGATGAAGTGGGGTTCGCCGGCCCTGGCGAAAGCAAGA
GGCGGCGCACCGCTGACACCGGAATTCCCGGCATTGGTAGCAACGGCAAC
AACGGGAATGCTAACGACCAGCAAAACGATGGGTGAGGTTGCTGCCTGAG
CATTCATCACGTGCGCGACACTAGTAGTAGTTGCGACCAAAGTTGTCACA
CAGCGACTGCTAGGCACCGACCCAGAGTTGCAGTACACCGTTCGTCGTTC
CTGATTTCCAGAATATGGTGCGAAATCTCTCGTCACTCACCCCATTGTTT
TATCCAGTGGCAATCCAGGTGCATTACTCCATCTCCGCATCGTGACATGG
ATCGTCGTAGGCCTGAGCGTTGGCGCGTAATAATCGTTTCGTGGAGCTCC
CCCCTCTCTTTCCACGTCCCGCCATCACCCCGCCAACGTCAGAATTGCAT
CACGACCAATGTACAGGGCTAACAATGGTGGGAACGTGGCAAGCATGTGG
AGTGACGGGGGCAAGAAGAGAGGGGCAGACGAAATGATGCCAGAGGTAAC
TGGCAGCGGCAAACGAGGATGCAACGACGACGCCGCAACGTTCAAGAGCC
CACGGTAAGATGGTCGTCCATTTGTTTGTCCGGTGTTGGAGATGGGCGAG
TCCAGGAAACACGTTGCGCAGCAAAACACAGTAGAGGTGAACAACTAAGC
CAAACCTTGAACAACGGCGAGATTATTCACCTCTTCGAATGTGGTTGAGA
TGTACCCTATAGGTCCACCAATATCTTGCCGTAGCAGACTGCTTAGACCA
CCGAGGCCCAACGCCCACTGGACTGTTTCGGACGCGTTATATGACCATGG
TATAAAGGCAATCGAAGGGTTTTCCTGTGTGGTACTTCCACCATCTTCCC
TTTATTGCTAGAGCTGTGCATTGGCAAGGAAAACCAATACTTCGAAGTAT
CTATACATATTGGTAATTGGCGAAGCCAATACGCAACATATTTCCAATAT
ATATTGGCGTCCAACATATTGGGAAAAAATGGCTCCCCCGCGGAGGCGCC
GCCGGAGCCAAATGTTGCGGTAATTGTCGCCATATTCTTCATAAACCAAT
TGGACTCTACCAACACCTTTATATTCGGTCATACATTCGGTGTTGTTTTC
GCGTTCTTCATACATACAATACATACATTACGTTGGCAAAAATAGCAGTG
ACGACAGAGCGATGTGTGCCTCCACACCTCCTTCACTCCCGGGCACACCT
GGGCAAGCACTGGTTTTCTCGCACAGCTGCTGTGTTGTGTGTGGGCATCG
GTTCTTCTAGTTTTGTTCATTAACAAAAATAATCACGATTAATTATGATT
TTGTTTGTTATTTTGGTCATTAAAACTAGTAAAAAACCAATCAATCATCG
TAGCTGTGATCACTTGATAATTTTAGCTGTAGGAGTAGATCTATGGTTTT
AGTATTCAATACTAATAATAAATGCCATGCGCATAAACGTGTGAGTTTTA
GTATGGGTATACTGAACTCCATACACGTGTATCGTGTGTTTTAGTCTACA
GTCTACGAAATGGTTTTTAGTACGCCCGCACTATTTCTCCATCCATATTT
ATATGGGTCTTAGTACGCTATACTGAACTCCATACAAACAAAATAATCAT
CGGTTCCTCTCCTGTCCCTTCAGTAAAAGGCCTTCCGGCTCGCTATAAAA
CTCCCGAAAATATATATATTGACGCCAAAATCCAGTATTTATTAGGGTTG
CGTACTGGCGCTGCGCGGCCATCGGCCCCCCGGCTGGTGAGGGGCCCCGC
TGGAGGCGCCCCGCCAGAGGCGCTTTTTTTCGCGATTTGGCTTCACTAGA
GCATAAAAAATGAGCGATTTTGGCCCTTCTGACAAAGGCATTATCGCGGG
AAAAACGATTGAAATTTCGAGTATTGACCAAATTATTGGTTTCGACATAC
GGAAATGTGGCAAAAATATAATTGTAACTAGTGAGCAACCAAAGTGGAAA
ACCCTAGAAAACCATCGGTTGAACGCTCAAGGCACAGGGTTGATGAGCGA
CACTCTTGTTTACTGGACTGGACAGCCTCTCGCAAAAACACAAAGGAGAC
AATGACACGGCAACCCTGAACATGTACCAAGAAACCAGCCTAAAAACCAA
GAAATTTCCCAAAACAGAGGGGAAACGACTAGAAACGACAGGATAAGCTG
CGCAACAAATGAACCAGCTTGTTAGAATGCTCAACAGTAGGAGATAACAA
CGGTGCCAAAGCTACCCAACCAAAACCTACACCGCGCACAAATCACAGCC
GCTGGTACCAGCACAACAAGCAGAGTCATTACGATGGCGATTCTCTCCGC
TACCAGCACCCTTCAGGAGAGAAAAAACTGAAATTCTCCCCAGCAAAGAC
GGCCACTACCACCCTAGCCCCTCTTCGCGGCCGCAACGTGGTTCGATGCT
TCCCACTCCTCCACTATCTTCCACGAGTGGCGCAAGAGTACCAGGAACTC
GACGGTGGTGCGGGCCAAGTTGTTGCGATTCTTCGTGACGACGTTTCCAG
CGCAGGAGAACAGGCGCTCAGACTCTGCCTGAGTGGCGGGGATCGCCAGC
ACACGGCGGGTGAGGTTGGCCAAGTGCGGGAAGTCTGTGCACCGTACCCG
CCACCAGTCCAAGGGGTCAAGGTACACCTTTGAGCCTTCCTTGTCTTCCT
CGTACATCTTGATACCTGTGGACGCCTTGAAGGCTGTGAGCTCCACCCGC
ACCGAGTTCGTGATGAGGCCGGTGGTGGAGCTACCAGCGCCGTCGCCCTG
CTGCGGGGTTCGTGCGCCTCCGATCGCTTGCGCCGCGGCCATGAACCCAC
CACCACCACGGCGCGGGCGCTTTCTCGAGGAGTCCTCTGAGCCCGCACTG
GTGGGCGATGATGCCGGTCCTGCCGCTGCATCCGGTCGTTGCTGCGACGA
GGCACGCTGAGAGTTCTCCGCATTGCGGGTTTCCACCGCGATCTTCACCG
CCTCTTCCTGCATGAGCTTCCAAACGTCGGGCTTCTCGTCCTCGTCCACT
CCATAGAGGGCTTTCGTGCGAGAGTCGAGCGCGGTTGCCAGCACCTGCAC
AGGCTTGAAACCCCGTGGTTGCCGCCTGGGGCCCTCCGTGTAGATCAGGA
CGTTGCGTCCGTCTCCCCAGCGGTTGATGAAATCGTTTCGGAGCGCGTTG
ATGCACGGCATCACCACTACCCTCGCCGTGTTGACGACGGCGTCCGAGTC
GGCCGTTAGCTCGGCGAGATCCTCGATCGCGTCCTCTAGGTTGTTGCGGA
GGTCGTAGATGAAGGGTACCACTAACCTACCCGTCACATGCTTGCGGCTC
TCAAGCAAAATCTGGGTGTTCCTGAACGGTTCCAGGACAGGCAATATCAT
CTTAAGAACCGCCCAGTCTGCCGCCGAAAGCAGCGGGTCCATCTTGTCCG
CCGCCTCGTGCATCTTAATTGGTACCTCAAGCTCTATCAGTCGCGCTGCC
ATGCTGCATGTGGACCACCACCTGGTTATCACGTCCTGGATCACCCGCTT
TTTGTCAACACCAAGGTAGGTATTGACAAACTGCTTGAGCCTGTCGGCCG
CCTGGCTTGATGTCGTGTATCACGTCACCAAGCCGCGCGCCAAGGCCATA
ACCTTTTTCACCCAGCCCGTTGAAGACGATGGAGGTGGTGCTTTCAAGCC
GGTGGTTGCAGCAGCCGATGTGAGTGGAAACGGTAGCGTCTCCTTCGAGA
AGGCACCCCAACTTTACCATTGAAGGCTCACAATCAGTGGTAATGACAGT
GACCTTGCCAGTCAGGCCATGCTTCACCACCGTGGCCTTGATACCAGCAG
CAAGAGCATCACCTGTCGTCGTTCCTTCCGACTTACTGCAGTTCACCGAG
AGAGTGACGAGCTTCCAGGCGCTGGTGATCAGGGTGAGCGTCAACGACAT
GTAGGTGTCGTTGGCGTATGAGGTCCAGCCGTCGCAGGTGATGTACACGT
GCTCGCCCTTGCTCAGGCTTGATACCTTCTCCATCGTGGCTTTCTTGACA
GTACGCATGGTGGTCACGCAGTCTTTCTTCTCTGGGATTTTGGCACTGGA
GCGTATGGCATGTACCATAGCCTTAAAGCTTTTATCAGCGAACATCTGTA
AGAAATTTTCAGAGGGCAAGGGAGAAGCGGGCGTGGATCTCAGTCACGTC
GCAAAGCAGCAGCAAAAAATGTAGTCGAAGGCTAGAAGATGCCACATACA
AGAGAGCGTCGGTGAGAAAATAAAAGGCCTATCTACTGTATCTACCATGC
GTGGGGGTCGTAAGTGGTATGTGAACAAATTATTCTATGATTGTTGGTAC
TTTGTTTTCGATAGCGTTTCGTGTTTAGATGCGATCGGGAGGAAAGCACG
GGACAAACATCGAAGTGTTTACAACAACAAAAAATAGAACAAATCATTCT
CATTTATATATTTCAAAACTAAATATCTTTTTTGAAAACAAATACTTCGA
AGTATTTAACTACTGCACATGCACGCATGCATCTCTCACCGAGAAGGGAA
TGGCGTTCATCACCATCCATCGCACCAGCTGTTGGTGCCAGCCCGTAGTG
TCTTTGCTGAAGTAGGTGTCGATCCCCGTCGAAGCCTTGGAGCCTCTGGT
CGCCCCCGACGCCGCCCCCGCGCTGACAGGCAATGACTTCCCCGCCTTGC
GGTTTGAACACTCTTCGAAGGCTGCTTGATGGCCGGGAAATTCGGTGTTG
AGGTGCCTCACCAGGTTTGATGGCGATTGGGCGTATCTGATCTCTGCTCC
GCCGAACTCCTTCTGCTCCATGCACAGCTTGCAGACGGCAAACACCTTGA
GGTCCCCTTTGACGTACACTTCAAAGTATTTCCAGGCGTACGCAGAGGCC
CCAGACGGTTTTGACTTCCGCGCCTCGGTCTGCACCCTCTGCAACTTTGC
GAGGCGCTCAGTTTCCTTCACACTCACGCGAGGCGTGTCCACTACTTGCA
CCTCGTCGCCTGCTCCGGGCGGTGCCGGCGCATCGGGCTGCTGCTGCTGC
TGATCGGCTGATGTAGCTGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGACGCAGCAGCCCCTGACACAGCAGCCCCTGCATCA
TCAGCACCACTGCCGGGGTCTGCAACAGACGACGAGCTGCCAGTGGAGAC
AAACCTGTCCATCGCTGTATGGTCTCCCGAGCTGTGTGGCGTGTGGGGTC
TGCTGTGTGTCTCTGTCTACTTTAAGGGGGCCTGAATACATGAGTTTCCG
CTGGTTCTTGAGGCGTTTTGAGGGGATATACGTATAGATGCGTATGTACT
GGCGGTACTGGCGGCCCGTCTACAAGTGCACGTGCACTGGCAGTATGTAC
TGGTTCAGTACCCAACCCTAATATGTATACAATATAGTTTTGGCCATTAC
AATAACAATATTGGTACCAATACACAGCTTTATTTTTTTCTCGACCTTGT
TTTTAACTTGGAATCAAACTCCACTCGCCAAGAGTGGGAGCTACGGCAGG
GGTTTCACGTGCACGAGAAGAACTCTCACACCACCGCATATGATACATGC
GGAAGAAACGAATGCACTGCCTGTGTAAAGGTTATGATATCTTCTTAGAG
GCGGGGGAGGTACGCAGTGTAATAGTGCTAGAGCGCCGCAAGTCTTGGGC
GGGTACTCTGACGAGGGCGGGAAAGGGCGTGAGAACGTGCTCCCACTTCT
AAAACTACGGCAAATGGCTGCGCTACCCAATCAATAACTGGTGCCGATAC
CTATTGTAGACATGTGTCTGGCGGACAAAACGCTTCAGTCGTTCAACAAA
CCAACCGTTCCTACTACTTCCATGTTGCGACATTGCTTCCCAGCAGGCGA
TGATGGAGGCATGGTGTACGTCATGCAGGGGGGACGGTATAATATATGAG
ATGCGGGGGTCTCTGGAGGACTAGCTATTACGATCTAGGACTCGAAGGGC
CGGAGCCCCCGCTTCCCCATTTAATTTGCAACGCGGAGCTTCAAAAATGC
GAGGCAAGGCACGA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig959:11238..18101+

>mRNA_D-herbacea_M_contig959.16028.1 ID=mRNA_D-herbacea_M_contig959.16028.1|Name=mRNA_D-herbacea_M_contig959.16028.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=828bp|location=Sequence derived from alignment at D-herbacea_M_contig959:11238..18101+ (Desmarestia herbacea DmunM male)
ATGGGAAGCGCTGGCGTCATCCTTGACAGTACAGGCAACGGCCGCAAGGC
AATGAGTTTAGGATGGGAAGCGCTGGCGTCATCCTTGACAGTACAGGCAA
CGGCCGCAAGGCAATGAGTTTAGGAGCGAGTAAGGATGATGCTTCCGCAG
ATGGTACAGTCTACCATGCAGCGGTCGTACCGAGAGGCCCCGGTGGTGTT
GTGGCCGCTGGTGATGAAGTGGGGTTCGCCGGCCCTGGCGAAAGCAAGAG
GCGGCGCACCGCTGACACCGGAATTCCCGGCATTGGTAGCAACGGCAACA
ACGGGAATGCTAACGACCAGCAAAACGATGGAGCGAGTAAGGATGATGCT
TCCGCAGATGGTACAGTCTACCATGCAGCGGTCGTACCGAGAGGCCCCGG
TGGTGTTGTGGCCGCTGGTGATGAAGTGGGGTTCGCCGGCCCTGGCGAAA
GCAAGAGGCGGCGCACCGCTGACACCGGAATTCCCGGCATTGGTAGCAAC
GGCAACAACGGGAATGCTAACGACCAGCAAAACGATGGGGCTAACAATGG
TGGGAACGTGGCAAGCATGTGGAGTGACGGGGGCAAGAAGAGAGGGGCAG
ACGAAATGATGCCAGAGGTAACTGGCAGCGGCAAACGAGGATGCAACGAC
GACGCCGCAACGTTCAAGAGCCCACGGGCTAACAATGGTGGGAACGTGGC
AAGCATGTGGAGTGACGGGGGCAAGAAGAGAGGGGCAGACGAAATGATGC
CAGAGGTAACTGGCAGCGGCAAACGAGGATGCAACGACGACGCCGCAACG
TTCAAGAGCCCACGGCGATGAGCGATGA
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