mRNA_D-herbacea_M_contig959.16027.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig959.16027.1
Unique NamemRNA_D-herbacea_M_contig959.16027.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig959.16027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig959contigD-herbacea_M_contig959:8554..8936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935780.0189607-CDS-D-herbacea_M_contig959:8553..89341622935780.0189607-CDS-D-herbacea_M_contig959:8553..8934Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 8554..8934 +
1690880701.0870671-CDS-D-herbacea_M_contig959:8553..89341690880701.0870671-CDS-D-herbacea_M_contig959:8553..8934Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 8554..8934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig959.16027.1prot_D-herbacea_M_contig959.16027.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig959 8554..8934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig959.16027.1

>prot_D-herbacea_M_contig959.16027.1 ID=prot_D-herbacea_M_contig959.16027.1|Name=mRNA_D-herbacea_M_contig959.16027.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=127bp
VHTSSGGSDAAVSSSVVSTGRTPGSGQMWSLGTLADSNRHLAFASAPSLT
TFGSITRDSGTVSLTSPVNVRTGGSRDVALAPTASKSGAKACNPIESRQE
GGGTRGLGFTGRANSFASKYVGGGGGG
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mRNA from alignment at D-herbacea_M_contig959:8554..8936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig959.16027.1 ID=mRNA_D-herbacea_M_contig959.16027.1|Name=mRNA_D-herbacea_M_contig959.16027.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=383bp|location=Sequence derived from alignment at D-herbacea_M_contig959:8554..8936+ (Desmarestia herbacea DmunM male)
GTCCATACCAGTAGTGGCGGCTCTGATGCGGCAGTATCCTCGTCAGTGGT
GAGTACTGGCCGCACACCGGGGAGTGGACAAATGTGGTCATTGGGCACAC
TTGCGGACAGCAATAGACACCTTGCGTTCGCCTCTGCGCCGTCATTGACT
ACGTTCGGCTCAATAACCAGAGACTCGGGGACAGTATCACTCACGTCGCC
TGTAAACGTTCGTACCGGCGGGAGTCGTGATGTGGCGCTCGCGCCCACGG
CAAGCAAGTCTGGAGCTAAGGCGTGCAATCCTATCGAAAGCAGACAAGAG
GGAGGAGGAACACGTGGACTAGGCTTTACCGGGAGAGCGAACTCCTTCGC
CTCGAAATACGTCGGCGGAGGAGGAGGCGGAGG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig959:8554..8936+

>mRNA_D-herbacea_M_contig959.16027.1 ID=mRNA_D-herbacea_M_contig959.16027.1|Name=mRNA_D-herbacea_M_contig959.16027.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=762bp|location=Sequence derived from alignment at D-herbacea_M_contig959:8554..8936+ (Desmarestia herbacea DmunM male)
GTCCATACCAGTAGTGGCGGCTCTGATGCGGCAGTATCCTCGTCAGTGGT
GAGTACTGGCCGCACACCGGGGAGTGGACAAATGTGGTCATTGGGCACAC
TTGCGGACAGCAATAGACACCTTGCGTTCGCCTCTGCGCCGTCATTGACT
ACGTTCGGCTCAATAACCAGAGACTCGGGGACAGTATCACTCACGTCGCC
TGTAAACGTTCGTACCGGCGGGAGTCGTGATGTGGCGCTCGCGCCCACGG
CAAGCAAGTCTGGAGCTAAGGCGTGCAATCCTATCGAAAGCAGACAAGAG
GGAGGAGGAACACGTGGACTAGGCTTTACCGGGAGAGCGAACTCCTTCGC
CTCGAAATACGTCGGCGGAGGAGGAGGCGGAGTCCATACCAGTAGTGGCG
GCTCTGATGCGGCAGTATCCTCGTCAGTGGTGAGTACTGGCCGCACACCG
GGGAGTGGACAAATGTGGTCATTGGGCACACTTGCGGACAGCAATAGACA
CCTTGCGTTCGCCTCTGCGCCGTCATTGACTACGTTCGGCTCAATAACCA
GAGACTCGGGGACAGTATCACTCACGTCGCCTGTAAACGTTCGTACCGGC
GGGAGTCGTGATGTGGCGCTCGCGCCCACGGCAAGCAAGTCTGGAGCTAA
GGCGTGCAATCCTATCGAAAGCAGACAAGAGGGAGGAGGAACACGTGGAC
TAGGCTTTACCGGGAGAGCGAACTCCTTCGCCTCGAAATACGTCGGCGGA
GGAGGAGGCGGA
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