mRNA_D-herbacea_M_contig959.16025.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig959.16025.1
Unique NamemRNA_D-herbacea_M_contig959.16025.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig959.16025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig959contigD-herbacea_M_contig959:7459..7812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.929984-CDS-D-herbacea_M_contig959:7458..78121622935779.929984-CDS-D-herbacea_M_contig959:7458..7812Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 7459..7812 +
1690880701.0620852-CDS-D-herbacea_M_contig959:7458..78121690880701.0620852-CDS-D-herbacea_M_contig959:7458..7812Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 7459..7812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig959.16025.1prot_D-herbacea_M_contig959.16025.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig959 7459..7812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig959.16025.1

>prot_D-herbacea_M_contig959.16025.1 ID=prot_D-herbacea_M_contig959.16025.1|Name=mRNA_D-herbacea_M_contig959.16025.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=118bp
PSVYRVKNVDIPHNNPMTPKDRSPLESSTVGIVTRCIQANACSAARVDAS
TSSDTSAPSCGRWKTERATVATHPVMPTPSGVNSHSVGICKDSVSSTPSE
TADKHCTPSAVSVAKSFG
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mRNA from alignment at D-herbacea_M_contig959:7459..7812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig959.16025.1 ID=mRNA_D-herbacea_M_contig959.16025.1|Name=mRNA_D-herbacea_M_contig959.16025.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=354bp|location=Sequence derived from alignment at D-herbacea_M_contig959:7459..7812+ (Desmarestia herbacea DmunM male)
CCAAGCGTTTACAGGGTGAAGAACGTTGACATCCCTCATAACAATCCTAT
GACGCCCAAGGACAGAAGCCCATTGGAGAGCAGCACTGTGGGCATTGTAA
CCCGTTGCATACAAGCCAATGCTTGTTCGGCAGCCAGAGTCGACGCATCA
ACTTCTTCGGATACGTCAGCGCCATCTTGCGGACGGTGGAAGACTGAGCG
TGCGACGGTGGCCACACATCCGGTTATGCCCACTCCCAGCGGGGTCAATA
GTCACTCGGTCGGTATTTGTAAGGACTCGGTGAGTTCTACACCTTCGGAA
ACGGCAGATAAACACTGTACACCTTCGGCTGTATCGGTAGCAAAATCGTT
TGGC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig959:7459..7812+

>mRNA_D-herbacea_M_contig959.16025.1 ID=mRNA_D-herbacea_M_contig959.16025.1|Name=mRNA_D-herbacea_M_contig959.16025.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=708bp|location=Sequence derived from alignment at D-herbacea_M_contig959:7459..7812+ (Desmarestia herbacea DmunM male)
CCAAGCGTTTACAGGGTGAAGAACGTTGACATCCCTCATAACAATCCTAT
GACGCCCAAGGACAGAAGCCCATTGGAGAGCAGCACTGTGGGCATTGTAA
CCCGTTGCATACAAGCCAATGCTTGTTCGGCAGCCAGAGTCGACGCATCA
ACTTCTTCGGATACGTCAGCGCCATCTTGCGGACGGTGGAAGACTGAGCG
TGCGACGGTGGCCACACATCCGGTTATGCCCACTCCCAGCGGGGTCAATA
GTCACTCGGTCGGTATTTGTAAGGACTCGGTGAGTTCTACACCTTCGGAA
ACGGCAGATAAACACTGTACACCTTCGGCTGTATCGGTAGCAAAATCGTT
TGGCCCAAGCGTTTACAGGGTGAAGAACGTTGACATCCCTCATAACAATC
CTATGACGCCCAAGGACAGAAGCCCATTGGAGAGCAGCACTGTGGGCATT
GTAACCCGTTGCATACAAGCCAATGCTTGTTCGGCAGCCAGAGTCGACGC
ATCAACTTCTTCGGATACGTCAGCGCCATCTTGCGGACGGTGGAAGACTG
AGCGTGCGACGGTGGCCACACATCCGGTTATGCCCACTCCCAGCGGGGTC
AATAGTCACTCGGTCGGTATTTGTAAGGACTCGGTGAGTTCTACACCTTC
GGAAACGGCAGATAAACACTGTACACCTTCGGCTGTATCGGTAGCAAAAT
CGTTTGGC
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