mRNA_D-herbacea_M_contig959.16024.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig959.16024.1
Unique NamemRNA_D-herbacea_M_contig959.16024.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig959.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig959contigD-herbacea_M_contig959:5978..7059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig959.16024.1prot_D-herbacea_M_contig959.16024.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig959 5983..7059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.7503307-UTR-D-herbacea_M_contig959:5977..59821622935779.7503307-UTR-D-herbacea_M_contig959:5977..5982Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 5978..5982 +
1690880700.9342191-UTR-D-herbacea_M_contig959:5977..59821690880700.9342191-UTR-D-herbacea_M_contig959:5977..5982Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig959 5978..5982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.7673783-CDS-D-herbacea_M_contig959:5982..60951622935779.7673783-CDS-D-herbacea_M_contig959:5982..6095Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 5983..6095 +
1690880700.9448864-CDS-D-herbacea_M_contig959:5982..60951690880700.9448864-CDS-D-herbacea_M_contig959:5982..6095Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 5983..6095 +
1622935779.7808385-CDS-D-herbacea_M_contig959:6887..70591622935779.7808385-CDS-D-herbacea_M_contig959:6887..7059Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 6888..7059 +
1690880700.960546-CDS-D-herbacea_M_contig959:6887..70591690880700.960546-CDS-D-herbacea_M_contig959:6887..7059Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig959 6888..7059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig959.16024.1

>prot_D-herbacea_M_contig959.16024.1 ID=prot_D-herbacea_M_contig959.16024.1|Name=mRNA_D-herbacea_M_contig959.16024.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=95bp
MAPKMRLRDNAAIVNTAITTSSPSGSNVLGAKRFGDGGPRKLAMYARGGD
SSLVGGNVSVDIKMCVSSKVRHQNLADLVPTAVKGCARAGQPVLS
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mRNA from alignment at D-herbacea_M_contig959:5978..7059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig959.16024.1 ID=mRNA_D-herbacea_M_contig959.16024.1|Name=mRNA_D-herbacea_M_contig959.16024.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1082bp|location=Sequence derived from alignment at D-herbacea_M_contig959:5978..7059+ (Desmarestia herbacea DmunM male)
AGGAAATGGCTCCCAAGATGAGACTTAGGGACAACGCTGCGATTGTCAAC
ACGGCAATTACTACGTCGTCGCCGTCGGGTAGCAATGTTCTGGGCGCGAA
GAGGTTTGGAGATGGAGGGTGAGCAAAACCCCTACATAATTAAACATAGG
CTGCCAGCACCGCAGGTCAAATCGTTGTACGCCTTTGCATTACTTGTAGG
CCATACGAATGCGATTTTTTATTGTCATACTTCGTACTACCTTTGTTTCG
ACCCGGATGTGACAAAGTTGGTTCGTTGTGAGGTTTCCGAGGGTGGTTTC
GACGCTTGTGGAGAGGTAATGGTTTCACAGTTTCCTTAAGGGGAAAACAC
GTACACTCTCTTGCGAAAAATACCTCTATGAAACCTTCCTACTGGGTTAA
CAAATGACCGCCAGCCGGGAAGTGGCTGTGGAATTCTCAGTAGTATAAAT
ATACAAGAGTATAAATCTAGGTTCCTATCTCGCCCAACTGTATCGTTCGG
CGTCAACGGCATGCACTTTGTTGGCGTCATGATGCTGTTACTCGAGTAGA
TACATAAGTTAAGATTGGTATCGGGCACCCCTTCATAGCCTACACCACCC
GAGGAACTCCTGTGTGCACACTACACCCGCATTTCAATCCTGCCCACCGA
TGATAAAACGTAGTTCACACTGTGTCCATTGGATCACAAGAGGGTTGCCA
CCAATATAGCAAGGACACACATTATCATCGTCGTTATTGCGATTGATCCA
TGGGCATTTGATCGCTAGACACGTAGACAGTATGAAAGCCTACTTTACTT
ACTTCCTCAACCCGCGGTCCTTCCACGGTTAACGGCTATTTGTATATTGA
ATGTAAGTTTTCCACATATCCCGCACGCCTCACCACCCTGACTTGTCACC
CATGCCATAGGCCACGCAAGCTGGCGATGTATGCTCGTGGCGGCGACAGC
AGCTTGGTTGGGGGCAATGTTTCAGTTGATATCAAGATGTGTGTGAGCAG
TAAGGTTCGTCACCAGAACCTTGCAGACCTCGTGCCTACCGCCGTCAAGG
GGTGCGCAAGGGCGGGGCAGCCTGTACTGTCG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig959:5978..7059+

>mRNA_D-herbacea_M_contig959.16024.1 ID=mRNA_D-herbacea_M_contig959.16024.1|Name=mRNA_D-herbacea_M_contig959.16024.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=570bp|location=Sequence derived from alignment at D-herbacea_M_contig959:5978..7059+ (Desmarestia herbacea DmunM male)
ATGGCTCCCAAGATGAGACTTAGGGACAACGCTGCGATTGTCAACACGGC
AATTACTACGTCGTCGCCGTCGGGTAGCAATGTTCTGGGCGCGAAGAGGT
TTGGAGATGGAGGATGGCTCCCAAGATGAGACTTAGGGACAACGCTGCGA
TTGTCAACACGGCAATTACTACGTCGTCGCCGTCGGGTAGCAATGTTCTG
GGCGCGAAGAGGTTTGGAGATGGAGGGCCACGCAAGCTGGCGATGTATGC
TCGTGGCGGCGACAGCAGCTTGGTTGGGGGCAATGTTTCAGTTGATATCA
AGATGTGTGTGAGCAGTAAGGTTCGTCACCAGAACCTTGCAGACCTCGTG
CCTACCGCCGTCAAGGGGTGCGCAAGGGCGGGGCAGCCTGTACTGTCGGC
CACGCAAGCTGGCGATGTATGCTCGTGGCGGCGACAGCAGCTTGGTTGGG
GGCAATGTTTCAGTTGATATCAAGATGTGTGTGAGCAGTAAGGTTCGTCA
CCAGAACCTTGCAGACCTCGTGCCTACCGCCGTCAAGGGGTGCGCAAGGG
CGGGGCAGCCTGTACTGTCG
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