mRNA_D-herbacea_M_contig953.16023.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig953.16023.1
Unique NamemRNA_D-herbacea_M_contig953.16023.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.580e-57
Identity = 125/311 (40.19%), Postives = 181/311 (58.20%), Query Frame = 1 
Query:  790 MDTSVLMPIPSLPFSSDQNVSELVQFTSALRDAVASIRVACDNSHPTLWIRGWEKCLERHVLRAVRSSSPQASSVKLMISDAFGQGGRLFDGGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEPEDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSLNQTRATESARL---GGHVSRTSARASVSAAGSKYN----------------------RVMSVDQENYNNMDSEFSKVYSVMQERGGFGKNNDDPPFYIHFNRREE 1647
            M T  L+ +P  P  +  +V ELVQ +SA+  +V  IR +  +     W+RGWEK LERH++ +VR +  ++++ K ++  A  Q  R  D G SGPD LQ ++RA+C GLS+ TPA V+Q LQN     GT F  Y+ +L++L+ +V+ VG  E  DGT+QVAV  GV DQ+A L A +F G+N ++LP+DS++ LM AL+D++ N T AT S RL   G  + R  A  SVS+ G +Y                        VM+V Q  Y++   EF +V  V +   GFG+N+DDPPFY+ F   +E
Sbjct:    1 MATKNLITMPLTPLQNGDDVVELVQLSSAITKSVEQIRASAQDFDSDHWVRGWEKVLERHLINSVRKNHAKSAATKQILVAAVNQSVRAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVRLRGVGSVLPRGQADMSVSSRG-RYGGGGSFSGAKSGSLTPQGSAGARAVMTVAQ--YDDESREFWQVSQVSRGNKGFGRNDDDPPFYVQFTNNKE 306
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BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 8.820e-51
Identity = 116/292 (39.73%), Postives = 173/292 (59.25%), Query Frame = 1 
Query:  781 YARMDTSVLMPIPSLPFSSDQNVSELVQFTSALRDAVASIRVACDNSHPTLWIRGWEKCLERHVLRAVRSSSPQASSVKLMISDAFGQGGRLFDGGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEPEDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSLNQTRATESARL---GGHVSRTSARASVSAAGSKYNRVMSVDQENYNNMDSEFSKVYSVMQERGGFGKNNDDPPFYIHFNRREE 1647
            +A M T  LM +P  P  +  +V ELVQ +SA+  +V  IR +  +     W+RGWEK LERH+++ VR +  ++++ K ++  A  Q  R  D G SGPD L+ ++RA+C GLS+ TPA V+Q LQN     GT F  Y+ +L++L+ +V+ VG  E  DGT+QVAV  GV DQ+A   A +F G+N ++LP+DS++ LM AL+D++ N T AT S  +   G  + R  A  SVS+ G     V       Y +   EF +V  V +   GFG+N+DDP F++  +  +E
Sbjct: 1049 FAVMATKNLMTMPLTPLQNGDDVVELVQLSSAITKSVEQIRASAQDFDSDHWVRGWEKVLERHLIKPVRKNHAKSAATKQILVAAVNQSVRATDSGMSGPDALKLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVHVRGVGSVMPRGQAGMSVSSRGRYGGGVAQ-----YYDESREFWQVSQVSRGNKGFGRNDDDPNFFVQLSDNQE 1333
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BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.050e-38
Identity = 116/327 (35.47%), Postives = 173/327 (52.91%), Query Frame = 1 
Query:  736 DHSPSPRRVSLACKAYARMDTSVLMPIPSLPFSSDQNVSELVQFTSALRDAVASIRV-ACDNSHPTLWIRGWEKCLERHVLRAVRSSSPQASSV--KLMISDAFGQGGRLFDGGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEPEDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSLNQTRATESARL------------GGHVSR-TSARASVSAAGSKYN-------RVMSVDQENYNNMDSEFSKVYSVMQERGGFGKNNDDPPFYIHFNRREE 1647
            D   S  +V+   + YA   T+ LM +P L      +V+E V  +S L   V  +R+ A DNS  + W+RGW+  LE+HVL +V S  P A  +  K  I+ +F Q  +  D G +G + L +++R L R LS ATP  V+ ALQNL    GTPFS Y+  LR L+ N   VG    +D  +Q+AV   V DQ++ +   +F G++L ++P+DS+ +LM ALE L+ N T AT   R             GG+ S  T++ AS ++AG  Y        RVM++ +E   + + EF KV+ V  +      +    PFY  F+ R+E
Sbjct:  446 DERLSKEQVTAIRQKYATYSTANLMRLPLLA-GQRMSVAETVSLSSTLVKNVEELRLGAGDNSKSSDWVRGWDIALEKHVLNSVSSRLPNAQGLDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTKRAGQGGGNASAGTTSYASAASAGRMYGKQPSQGARVMNIHEE-MEDEEKEFKKVHYVATQWEKGKGDESYIPFYTRFDSRKE 770
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BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.970e-28
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 1 
Query: 1009 SVKLMISDAFGQGGRLFDGGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEPEDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSLNQTRATESARLGG 1446
            S +++++ A  Q  R  D   SGPD L  V+R++C GLS  T A V+Q LQN     GT F  Y+ EL++L+ +V+ VG  E  DGT+QVAV  GV DQFA L A +F G+N ++LP+D++D+LM ALED+  N T AT S R+ G
Sbjct:  115 SAQILVA-AITQARRAMDAETSGPDALTMVLRSVCGGLSKVTSALVLQQLQNFAVPAGTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAALEDMIENTTTATSSTRVRG 257
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BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.090e-24
Identity = 74/164 (45.12%), Postives = 100/164 (60.98%), Query Frame = 1 
Query: 1012 VKLMISD--AFGQGGRLFDGGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEPEDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSLNQTRATESARLGGHVSRTSARASVSAAGSK 1497
            V+ +++D  A  Q  R  D   SGPD L  V+R++C GLS  T A V+Q LQN      T F  Y+ EL++L+ +V+ VG  E  DGT+QVAV  GV DQFA L A +F G+N ++LP+D +D+LM A ED+  N T AT S R+ G  S  S R  V A+G +
Sbjct:  403 VEAVVADVAAITQARRAMDAKTSGPDALTMVLRSVCGGLSEVTSALVLQQLQNFAVPVDTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVAFEDMIENTTTATSSTRVRGVGSAVS-RGPVVASGGR 563
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig953.16023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KNG1_9PHAE1.580e-5740.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ9_9PHAE8.820e-5139.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N6_9PHAE2.050e-3835.47CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JI85_9PHAE1.970e-2847.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFF1_9PHAE1.090e-2445.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig953contigD-herbacea_M_contig953:23879..25525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1648
Cds size990
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.6919754-UTR-D-herbacea_M_contig953:23878..245351622935779.6919754-UTR-D-herbacea_M_contig953:23878..24535Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig953 23879..24535 +
1690880700.9112294-UTR-D-herbacea_M_contig953:23878..245351690880700.9112294-UTR-D-herbacea_M_contig953:23878..24535Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig953 23879..24535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.710139-CDS-D-herbacea_M_contig953:24535..255251622935779.710139-CDS-D-herbacea_M_contig953:24535..25525Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig953 24536..25525 +
1690880700.923306-CDS-D-herbacea_M_contig953:24535..255251690880700.923306-CDS-D-herbacea_M_contig953:24535..25525Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig953 24536..25525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig953.16023.1prot_D-herbacea_M_contig953.16023.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig953 24536..25525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig953.16023.1

>prot_D-herbacea_M_contig953.16023.1 ID=prot_D-herbacea_M_contig953.16023.1|Name=mRNA_D-herbacea_M_contig953.16023.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=330bp
MRRTSGDSPPHSQGNPRVPCQVPLTRDHSPSPRRVSLACKAYARMDTSVL
MPIPSLPFSSDQNVSELVQFTSALRDAVASIRVACDNSHPTLWIRGWEKC
LERHVLRAVRSSSPQASSVKLMISDAFGQGGRLFDGGDSGPDVLQYVIRA
LCRGLSSATPAAVMQALQNLVGSPGTPFSTYVAELRLLLANVRCVGQVEP
EDGTMQVAVTTGVDDQFAGLGAQMFSGQNLRSLPFDSVDELMGALEDLSL
NQTRATESARLGGHVSRTSARASVSAAGSKYNRVMSVDQENYNNMDSEFS
KVYSVMQERGGFGKNNDDPPFYIHFNRREE
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mRNA from alignment at D-herbacea_M_contig953:23879..25525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig953.16023.1 ID=mRNA_D-herbacea_M_contig953.16023.1|Name=mRNA_D-herbacea_M_contig953.16023.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1647bp|location=Sequence derived from alignment at D-herbacea_M_contig953:23879..25525+ (Desmarestia herbacea DmunM male)
GGCGGAGATGCGTTCGAAGTCCGCATAAGAGTGGATGGCCACCAAGGCCG
TGCTCTTGGCCACTTCCTCGGCGGGAGTCGTAGAGGGGGCCTGGGCATCA
GGTACAAGCGCGCGCGGGGAAAGGGGCTCGGGTGAAGAAAGCGCCGCGAA
GCGGTTTCGGTACAAGGGGTCCTCATGCGCGGACGAGGGAGAAGGCACAC
GACCGCGGGGCGAAGGCGGGGCAATCTTGCATGAGCGCACATGCATAGAA
TTAGGGTCATTGGAGTCGAGCGACTCATGCAAAGAGCGAGCAAACTCTGC
ATCCTGCGCGATGACGTCGGCAGCTGCCAACGCCATGGCATTCTCCTCGT
TTTGTAGATCACGTGCGAGCTGCTCGTCAGACGCTATGTCAAGGGAGGAG
CGGGGCGTTTCATGTTTGTGTCCTGTTTTCGATCGTACAGGACCCGTAGG
CACAACAGCTCCACCGGGTCCGGCAGCTGTCGTTACGCACAAACCGGAAT
CAAGTGGGGCTACGCCAATCAGCTTACACTTGTCGTCAAACGACAACCCC
GCGAGGGCGGTGGATAACATGGTGGACACTTCAGACAAAAGTACCTGAGC
TGAGCTGCCGCCGTCGTGGCCGTCGGCAGACGGTGTTGAAGGGGCGTCCG
CACGCGCATGCGCCGAACCTCCGGGGATTCCCCCCCCCACTCCCAGGGGA
ACCCGCGTGTACCTTGCCAGGTGCCTCTCACTCGGGACCATTCTCCTAGC
CCTCGTCGTGTGTCCCTTGCGTGCAAAGCCTATGCACGAATGGACACGAG
TGTGTTGATGCCTATTCCATCCTTGCCGTTTTCGTCTGACCAGAATGTGT
CTGAACTGGTTCAGTTCACGTCGGCATTGCGAGATGCTGTCGCTAGTATT
CGTGTCGCTTGTGATAATTCCCACCCCACCCTATGGATACGGGGTTGGGA
AAAATGTCTAGAACGTCATGTGTTGCGTGCTGTTCGTTCGTCTTCACCGC
AGGCGTCATCGGTGAAGTTGATGATCTCCGACGCCTTTGGCCAGGGTGGC
CGGTTGTTTGATGGCGGCGACAGTGGTCCCGACGTACTGCAGTACGTCAT
TCGCGCCTTATGTCGAGGTCTGAGTAGTGCAACGCCCGCGGCTGTCATGC
AGGCTTTGCAAAATTTAGTGGGTTCGCCAGGCACCCCATTTTCAACGTAT
GTTGCAGAGTTACGTCTGTTGTTGGCTAATGTGCGGTGTGTGGGGCAGGT
TGAACCGGAAGACGGTACGATGCAAGTAGCCGTTACAACGGGGGTCGATG
ACCAGTTTGCGGGATTGGGCGCTCAAATGTTTTCGGGGCAGAACTTACGC
AGTTTGCCGTTTGACAGCGTAGACGAGCTCATGGGAGCTCTCGAAGATTT
ATCCTTGAATCAAACGAGAGCCACCGAGTCCGCTAGACTAGGGGGACATG
TGTCGCGTACATCCGCTCGTGCTTCGGTATCGGCAGCCGGTAGCAAATAC
AACAGAGTAATGTCAGTGGACCAAGAAAATTATAATAATATGGATTCGGA
ATTTTCCAAGGTTTATAGTGTCATGCAAGAACGTGGGGGCTTCGGTAAAA
ATAATGATGATCCCCCATTCTATATACATTTCAACAGACGGGAGGAA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig953:23879..25525+

>mRNA_D-herbacea_M_contig953.16023.1 ID=mRNA_D-herbacea_M_contig953.16023.1|Name=mRNA_D-herbacea_M_contig953.16023.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1980bp|location=Sequence derived from alignment at D-herbacea_M_contig953:23879..25525+ (Desmarestia herbacea DmunM male)
ATGCGCCGAACCTCCGGGGATTCCCCCCCCCACTCCCAGGGGAACCCGCG
TGTACCTTGCCAGGTGCCTCTCACTCGGGACCATTCTCCTAGCCCTCGTC
GTGTGTCCCTTGCGTGCAAAGCCTATGCACGAATGGACACGAGTGTGTTG
ATGCCTATTCCATCCTTGCCGTTTTCGTCTGACCAGAATGTGTCTGAACT
GGTTCAGTTCACGTCGGCATTGCGAGATGCTGTCGCTAGTATTCGTGTCG
CTTGTGATAATTCCCACCCCACCCTATGGATACGGGGTTGGGAAAAATGT
CTAGAACGTCATGTGTTGCGTGCTGTTCGTTCGTCTTCACCGCAGGCGTC
ATCGGTGAAGTTGATGATCTCCGACGCCTTTGGCCAGGGTGGCCGGTTGT
TTGATGGCGGCGACAGTGGTCCCGACGTACTGCAGTACGTCATTCGCGCC
TTATGTCGAGGTCTGAGTAGTGCAACGCCCGCGGCTGTCATGCAGGCTTT
GCAAAATTTAGTGGGTTCGCCAGGCACCCCATTTTCAACGTATGTTGCAG
AGTTACGTCTGTTGTTGGCTAATGTGCGGTGTGTGGGGCAGGTTGAACCG
GAAGACGGTACGATGCAAGTAGCCGTTACAACGGGGGTCGATGACCAGTT
TGCGGGATTGGGCGCTCAAATGTTTTCGGGGCAGAACTTACGCAGTTTGC
CGTTTGACAGCGTAGACGAGCTCATGGGAGCTCTCGAAGATTTATCCTTG
AATCAAACGAGAGCCACCGAGTCCGCTAGACTAGGGGGACATGTGTCGCG
TACATCCGCTCGTGCTTCGGTATCGGCAGCCGGTAGCAAATACAACAGAG
TAATGTCAGTGGACCAAGAAAATTATAATAATATGGATTCGGAATTTTCC
AAGGTTTATAGTGTCATGCAAGAACGTGGGGGCTTCGGTAAAAATAATGA
TGATCCCCCATTCTATATACATTTCAACAGACGGGAGGAAATGCGCCGAA
CCTCCGGGGATTCCCCCCCCCACTCCCAGGGGAACCCGCGTGTACCTTGC
CAGGTGCCTCTCACTCGGGACCATTCTCCTAGCCCTCGTCGTGTGTCCCT
TGCGTGCAAAGCCTATGCACGAATGGACACGAGTGTGTTGATGCCTATTC
CATCCTTGCCGTTTTCGTCTGACCAGAATGTGTCTGAACTGGTTCAGTTC
ACGTCGGCATTGCGAGATGCTGTCGCTAGTATTCGTGTCGCTTGTGATAA
TTCCCACCCCACCCTATGGATACGGGGTTGGGAAAAATGTCTAGAACGTC
ATGTGTTGCGTGCTGTTCGTTCGTCTTCACCGCAGGCGTCATCGGTGAAG
TTGATGATCTCCGACGCCTTTGGCCAGGGTGGCCGGTTGTTTGATGGCGG
CGACAGTGGTCCCGACGTACTGCAGTACGTCATTCGCGCCTTATGTCGAG
GTCTGAGTAGTGCAACGCCCGCGGCTGTCATGCAGGCTTTGCAAAATTTA
GTGGGTTCGCCAGGCACCCCATTTTCAACGTATGTTGCAGAGTTACGTCT
GTTGTTGGCTAATGTGCGGTGTGTGGGGCAGGTTGAACCGGAAGACGGTA
CGATGCAAGTAGCCGTTACAACGGGGGTCGATGACCAGTTTGCGGGATTG
GGCGCTCAAATGTTTTCGGGGCAGAACTTACGCAGTTTGCCGTTTGACAG
CGTAGACGAGCTCATGGGAGCTCTCGAAGATTTATCCTTGAATCAAACGA
GAGCCACCGAGTCCGCTAGACTAGGGGGACATGTGTCGCGTACATCCGCT
CGTGCTTCGGTATCGGCAGCCGGTAGCAAATACAACAGAGTAATGTCAGT
GGACCAAGAAAATTATAATAATATGGATTCGGAATTTTCCAAGGTTTATA
GTGTCATGCAAGAACGTGGGGGCTTCGGTAAAAATAATGATGATCCCCCA
TTCTATATACATTTCAACAGACGGGAGGAA
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