mRNA_D-herbacea_M_contig951.16020.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig951.16020.1
Unique NamemRNA_D-herbacea_M_contig951.16020.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Match: A0A6H5KHY2_9PHAE (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-7
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:  665 AELKELRSADGRFRFVVEDDGSLVLYMESDAIWAIYAMSAHVARPVDDGAKLVLQSDGNLLVFLETRGCIWSSNTANSGPAPFRLTMQN 931
            A++K LRSA+G+F F V  D ++++      IW   + SA    P     +LVLQ +G+L+ +  +    WSS TA  GP P+ LTMQ+
Sbjct:  131 ADVKPLRSANGKFTFQVLPDRNIIVRQAERVIWNSGSRSAD-KPPFGAPFRLVLQKNGDLVGYDSSGRVFWSSETAKCGPPPYTLTMQD 218
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BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.130e-6
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:  662 NAELKELRSADGRFRFVVEDDGSLVLYMESDAIWAIYAMSAHVARPVDDGAKLVLQSDGNLLVFLETRGCIWSSNTANSGPA 907
            NA++K LRSA+G+F F V  D ++++      IW+  + SA    PV    +LVLQ +G+L+ +       WSS TAN GPA
Sbjct:  242 NADVKVLRSANGKFTFQVLPDRNIIVRQAERIIWSSGSRSAG-KPPVGAPFRLVLQKNGDLVGYDSAARVFWSSETANCGPA 322
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BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Match: UPI0019411FCA (hypothetical protein n=1 Tax=Actinoplanes humidus TaxID=113566 RepID=UPI0019411FCA)

HSP 1 Score: 56.6 bits (135), Expect = 9.080e-6
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:  680 LRSADGRFRFVVEDDGSLVLYMESD--AIWAIYAMSAHVARPVDDGAKL-VLQSDGNLLVFLETRGCIWSSNTANSGPAPFRL 919
            L SADGRFRFV +DD +LVLY  SD  A+W          RP   G  + V+Q+DGNL+V+      +W+S+T   G A  RL
Sbjct:  132 LYSADGRFRFVYQDDTNLVLYRRSDDLALWD--------TRPKPGGVGVCVMQTDGNLVVYNAAGQAVWASDT--DGEAGARL 204
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BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Match: A0A3P8NK81_ASTCA (Lectin-like n=3 Tax=Haplochromini TaxID=319058 RepID=A0A3P8NK81_ASTCA)

HSP 1 Score: 53.1 bits (126), Expect = 2.070e-5
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:  644 MAKNGL--NAELKE---LRSADGRFRFVVEDDGSLVLYMESDAIWAIYAMSAHVARPVDDGAKLVLQSDGNLLVFLETRGCIWSSNTA-NSGPAPFRLTMQN 931
            M+KN +  N EL++   L S +G F+ ++++DG+ V+Y  S  IWA        A    + A+L+LQSD NL+++ +    +WSS TA N+     RLT+ N
Sbjct:    1 MSKNSISTNQELRKGESLVSVNGNFKAILQEDGNFVVYKWSP-IWA-------TATNGKNPARLLLQSDSNLVLYTQDDKPVWSSGTAINADIRTMRLTLTN 94
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BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Match: A0A8C8FHP7_ONCTS (Bulb-type lectin domain-containing protein n=2 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FHP7_ONCTS)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-5
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:  641 VMAKNGLNAELKELR-----SADGRFRFVVEDDGSLVLYMESDAIWAIYAMSAHVARPVDDGAKLVLQSDGNLLVFLETRGCIWSSNTA 892
            +M+KN ++ E   L+     S +G+F+ + + DG+ VLY     +WA   ++        D  +L+LQ DGNL+++      IWSSNTA
Sbjct:   49 IMSKNYMSTERILLKGDYLLSNNGQFKAIFQTDGNFVLYGWGQVVWASNTVNK-------DAQRLILQQDGNLVIYTTQDHPIWSSNTA 130
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig951.16020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KHY2_9PHAE3.760e-738.20Bulb-type lectin domain-containing protein n=1 Tax... [more]
D8LBB2_ECTSI8.130e-640.24Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus sili... [more]
UPI0019411FCA9.080e-644.58hypothetical protein n=1 Tax=Actinoplanes humidus ... [more]
A0A3P8NK81_ASTCA2.070e-536.27Lectin-like n=3 Tax=Haplochromini TaxID=319058 Rep... [more]
A0A8C8FHP7_ONCTS5.550e-533.71Bulb-type lectin domain-containing protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig951contigD-herbacea_M_contig951:10904..13971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size933
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig951.16020.1prot_D-herbacea_M_contig951.16020.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig951 11373..13971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.4078355-UTR-D-herbacea_M_contig951:10903..113721622935779.4078355-UTR-D-herbacea_M_contig951:10903..11372Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig951 10904..11372 +
1690880700.8253238-UTR-D-herbacea_M_contig951:10903..113721690880700.8253238-UTR-D-herbacea_M_contig951:10903..11372Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig951 10904..11372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935779.4251018-CDS-D-herbacea_M_contig951:11372..113961622935779.4251018-CDS-D-herbacea_M_contig951:11372..11396Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig951 11373..11396 +
1690880700.835595-CDS-D-herbacea_M_contig951:11372..113961690880700.835595-CDS-D-herbacea_M_contig951:11372..11396Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig951 11373..11396 +
1622935779.4405296-CDS-D-herbacea_M_contig951:13533..139711622935779.4405296-CDS-D-herbacea_M_contig951:13533..13971Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig951 13534..13971 +
1690880700.8440971-CDS-D-herbacea_M_contig951:13533..139711690880700.8440971-CDS-D-herbacea_M_contig951:13533..13971Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig951 13534..13971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig951.16020.1

>prot_D-herbacea_M_contig951.16020.1 ID=prot_D-herbacea_M_contig951.16020.1|Name=mRNA_D-herbacea_M_contig951.16020.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=154bp
MNTYFEDVTASSDPGAGCATAASGLSSSTSGASPSKLTDISSISSSNNNN
GPPVSTTVMAKNGLNAELKELRSADGRFRFVVEDDGSLVLYMESDAIWAI
YAMSAHVARPVDDGAKLVLQSDGNLLVFLETRGCIWSSNTANSGPAPFRL
TMQN
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mRNA from alignment at D-herbacea_M_contig951:10904..13971+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig951.16020.1 ID=mRNA_D-herbacea_M_contig951.16020.1|Name=mRNA_D-herbacea_M_contig951.16020.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3068bp|location=Sequence derived from alignment at D-herbacea_M_contig951:10904..13971+ (Desmarestia herbacea DmunM male)
GAAAGGAAGGGGCGGGTcCCGCAAGACAAATTCTCGTAAAGTGACAACGT
GACGTTCCAACTGCCGGCGGGAAAAAAAAAAGGTGGACGGTGAACGAACG
GTGCACGACAGCAGCAAAGGAATCCGCGACCCCAGGGCCGCCGCGCAAGA
CGCCCAAGCACTGAGAGAGAGAGGGGAGGGGGTCGTGCGTGTCATACAGG
CGCGTCTTCTGCTCTTTCTCGCAGAGCTTCTTTCCCGTCCACCCACCCCA
TCCCACCCCACCTCACCCCTCTCTGTGCTCTCTCATCCTTCTCGTCGGGT
CTTGCCTCTCTACGAACTGCTAGAAGACTCACTATCATCTCCAAAATTCT
TCTGCGCGTCTGTCACACCACCATCGCCATCGCCATCGCCACCATCGTCT
GCGCCTTTCTTCCCTTGGCGTTTACTGCTATTACTGCTGGACTACTCCCG
CGCCGCTGATTGTTCGGGCATGAACACCTACTTCGAAGACGTGGTGAGTG
CGCCGCGTGGTGTCCGCTGGAGATCCATCTGCAATAATAGTCCATGAGAG
AACGAACGTCATTGTTGCGATTATCGGATAGTATGACATAGATAGGAGTA
GTGTCGCACGAGTTCATCATGGGAACGAACGTGCTTTATCATCAGTATAT
TAAACACCGTGAGTGGTGCACGGAGTACGTTATTGTATTGTATTCTTGGA
GGCGGACAACACTATTAATAGTAATACCTGGTACTGTTTTTATTGATGGA
TGTGATGTACTCTTATTATTACTATGTGTGAGTATGTGGCTGTTGCTGTG
GGCTGTCTTCTTTCTCCGTGGAAGGGCTGGCGCGGCCATTGTTGCGGCAG
CATTACTATTAACATCACGGCACAATAACACAGCACCACTCAGTACAACC
CAGCCTCATCTCCAAGTCAACACCTACCGTAGCCCAAGCTTGTACCTAAC
TCAAAACCCAACCTTATACACATGTTTCACCACAACAAATAAATGTACTA
GTCTAGGTACTCGTCTATAATACTACTATTATTAGTACTAATATATAAGT
ATCTTTTTAATGGTCAAAAATCGAATCACGTCTTCCCCAAGATCTTGCGC
GTTCCTTTCTGTCCGTTCAAAGTATATATGTATGTATGAGTACGGCGAGA
ATAGATTATCCTGCGCGCCCGCGCCGTCCATGCTAGCGTCGTCATAATAC
TGTTGTACCATACTGCTGTCTGTAGTAATAATCTTCTCGCTCGCCCTTGA
GCTGCTATGATACTCCTACCGCATACAACACAAAAAACGTCACTTTCGAA
CCTCCCATCTGCATTTATTTCACCGATTTGCCCCTTGCTGATGATAGCTG
TCATGCGGTGATAGACACTACATGTTCAATATATCACGTGCATACGGTGC
GACTTACTCTGATATTATACCTGCCGTGCGAAGGATCATATCGTCGGTCC
GCCCCTCGACCTCTCTCGATGAAAATTTCAATTTTCAGTTTTCGTCGCAT
ATTTTTTCAACAACAGTACACTATTACTGTAGTACAACAACAGTAGTAGT
AGCGCCAGCGTGACTTCCGCTAATAATTTCGACGAAATAAAGTCAGCAAG
CTGCGGAGGTGCCGAACTCTGTGCGCAATACTATTCGAAAGCGCGTATTC
CTGGGAGGAGGGGGGAGGGCGGGGGGTGTACTCATTTCATGCATGGCCGA
AGTCGTATGACCATAGACCTTCACATCCCTACAATGCCGGGACGGAGCAC
GTCAGGTTTTCACCGACCAGGCAGACATCGCGTGCACCAAGCGTGAAGTG
CCGTGAGGTGTTGGGCGAATCGCATGAAGGGTGAGCTGCATCCTACTAAG
AACCCCTCGTGAGGCGAACTTTCTTGCATATGGATGACAGCGTCGAATAA
ACAGTTTGCTTTCTGGTGTGGCCACTTCCAGAGACAGCAATGGGTATATA
CTATGTAACTGCCTCGTGGGTGCCTTACCATATATGCGCTACGTGATATC
ATCCCACTTGCGCGGAGTTCAGGTTCTCCACCCCGCACAATGTGGTTTAA
CTCGACAACCAGCCATGGTAACCGCCAAAAAAAAAAGGAAAAAAAAAACG
GTACCGTGGTTGTCTAGATTACGTAGCGAGTGGCGTCTTTTACAGCGTCG
TTGCCAACCGACACCAACCCCAAGGGGGGGGGAGGGGGGTAGAAAGTTAG
ATGGTTGTGTTGTGACCACTGAGCGAGGAGCTCCTGTGAACTTGAGCTTA
AGCTGGAAAGATAAAATGGTTAAAAGCATTCCAGCATCCACCCGGCTTGA
AGTGAATACCGAAATGTTTCTACCTCACGTCCTCTCTTATACCCCCCCCC
ACTTGACGATGGTGGCGACAAAAGGCGAGACAAGAAGGGGATAAGATAAG
CAAGAGGTTATTGTGGAAGATATGGAAAAAACACTTAAAGCGCCCTAATG
TCAGAGGTGCCTCTATTAGGAATAGGAACAGTGCCCCGTCTCGAAAGGGA
TCCGTGGACAATGGTCAGATGACTAAGGCAAGAAACAAATGAGTCCCCCT
GCCCCCCCCGCGACGCCGCCATATGACTAAGGCAAGAAACAAATGGGTAC
CCCCGACGCCGCCGCCCCTGTTCCCTCCAGACTGCCAGCAGTGACCCTGG
CGCCGGCTGCGCAACAGCTGCGTCCGGCTTGAGCTCGTCTACAAGCGGAG
CATCACCATCAAAGCTAACGGATATATCTTCTATTTCTAGCAGCAACAAC
AATAACGGCCCGCCCGTGTCCACGACTGTGATGGCGAAGAACGGCCTCAA
CGCGGAGCTGAAGGAGCTGAGGTCCGCCGACGGACGGTTCCGTTTCGTCG
TAGAAGATGACGGCAGCCTCGTGCTCTACATGGAGTCCGACGCTATCTGG
GCCATCTACGCCATGTCCGCCCACGTGGCTCGCCCCGTCGACGACGGGGC
CAAGCTTGTGCTGCAGAGCGACGGAAACCTGCTGGTGTTTCTCGAGACTA
GAGGTTGCATCTGGAGCTCGAACACGGCCAACTCCGGCCCGGCCCCGTTT
AGGTTGACCATGCAGAAC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig951:10904..13971+

>mRNA_D-herbacea_M_contig951.16020.1 ID=mRNA_D-herbacea_M_contig951.16020.1|Name=mRNA_D-herbacea_M_contig951.16020.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=924bp|location=Sequence derived from alignment at D-herbacea_M_contig951:10904..13971+ (Desmarestia herbacea DmunM male)
ATGAACACCTACTTCGAAGACGTGATGAACACCTACTTCGAAGACGTGAC
TGCCAGCAGTGACCCTGGCGCCGGCTGCGCAACAGCTGCGTCCGGCTTGA
GCTCGTCTACAAGCGGAGCATCACCATCAAAGCTAACGGATATATCTTCT
ATTTCTAGCAGCAACAACAATAACGGCCCGCCCGTGTCCACGACTGTGAT
GGCGAAGAACGGCCTCAACGCGGAGCTGAAGGAGCTGAGGTCCGCCGACG
GACGGTTCCGTTTCGTCGTAGAAGATGACGGCAGCCTCGTGCTCTACATG
GAGTCCGACGCTATCTGGGCCATCTACGCCATGTCCGCCCACGTGGCTCG
CCCCGTCGACGACGGGGCCAAGCTTGTGCTGCAGAGCGACGGAAACCTGC
TGGTGTTTCTCGAGACTAGAGGTTGCATCTGGAGCTCGAACACGGCCAAC
TCCGGCCCGGCCCCGTTTAGGTTGACCATGCAGAACACTGCCAGCAGTGA
CCCTGGCGCCGGCTGCGCAACAGCTGCGTCCGGCTTGAGCTCGTCTACAA
GCGGAGCATCACCATCAAAGCTAACGGATATATCTTCTATTTCTAGCAGC
AACAACAATAACGGCCCGCCCGTGTCCACGACTGTGATGGCGAAGAACGG
CCTCAACGCGGAGCTGAAGGAGCTGAGGTCCGCCGACGGACGGTTCCGTT
TCGTCGTAGAAGATGACGGCAGCCTCGTGCTCTACATGGAGTCCGACGCT
ATCTGGGCCATCTACGCCATGTCCGCCCACGTGGCTCGCCCCGTCGACGA
CGGGGCCAAGCTTGTGCTGCAGAGCGACGGAAACCTGCTGGTGTTTCTCG
AGACTAGAGGTTGCATCTGGAGCTCGAACACGGCCAACTCCGGCCCGGCC
CCGTTTAGGTTGACCATGCAGAAC
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