mRNA_D-herbacea_M_contig95.16013.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig95.16013.1
Unique NamemRNA_D-herbacea_M_contig95.16013.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig95.16013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig95contigD-herbacea_M_contig95:788135..788514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935773.1174476-UTR-D-herbacea_M_contig95:788134..7881631622935773.1174476-UTR-D-herbacea_M_contig95:788134..788163Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig95 788135..788163 +
1690880697.741766-UTR-D-herbacea_M_contig95:788134..7881631690880697.741766-UTR-D-herbacea_M_contig95:788134..788163Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig95 788135..788163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935773.1341414-CDS-D-herbacea_M_contig95:788163..7885141622935773.1341414-CDS-D-herbacea_M_contig95:788163..788514Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 788164..788514 +
1690880697.7560968-CDS-D-herbacea_M_contig95:788163..7885141690880697.7560968-CDS-D-herbacea_M_contig95:788163..788514Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig95 788164..788514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig95.16013.1prot_D-herbacea_M_contig95.16013.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig95 788164..788514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig95.16013.1

>prot_D-herbacea_M_contig95.16013.1 ID=prot_D-herbacea_M_contig95.16013.1|Name=mRNA_D-herbacea_M_contig95.16013.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=117bp
MVLSRHAPSPISSDMAHEGYYCSPRGGGLGGMYVCVLVSVRSCCLSCCLS
TSGGAGLCVCVMLRNVFLFCQAKNKADIVARLFMSNSPKCGDVSRQQTVL
TVQQSEEPGTATDLKN*
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mRNA from alignment at D-herbacea_M_contig95:788135..788514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig95.16013.1 ID=mRNA_D-herbacea_M_contig95.16013.1|Name=mRNA_D-herbacea_M_contig95.16013.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=380bp|location=Sequence derived from alignment at D-herbacea_M_contig95:788135..788514+ (Desmarestia herbacea DmunM male)
GGTCCCAAAAGCATCATGCAAGCCTGGCGATGGTTCTCAGTAGACACGCA
CCATCACCAATCTCGTCGGATATGGCCCACGAAGGTTATTATTGTAGCCC
GCGAGGAGGAGGATTAGGAGGTATGTATGTGTGTGTGTTGGTGTCTGTCA
GGAGCTGCTGCCTCAGCTGCTGTCTCAGCACGTCAGGAGGAGCTGGGCTG
TGTGTGTGTGTCATGTTGCGAAACGTTTTTTTGTTTTGTCAAGCAAAAAA
TAAAGCTGACATCGTTGCACGGCTGTTCATGTCAAACAGCCCGAAGTGTG
GTGACGTTTCACGACAGCAGACAGTTTTGACAGTTCAACAGTCTGAAGAG
CCCGGCACAGCGACCGACCTGAAAAACTGA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig95:788135..788514+

>mRNA_D-herbacea_M_contig95.16013.1 ID=mRNA_D-herbacea_M_contig95.16013.1|Name=mRNA_D-herbacea_M_contig95.16013.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=702bp|location=Sequence derived from alignment at D-herbacea_M_contig95:788135..788514+ (Desmarestia herbacea DmunM male)
ATGGTTCTCAGTAGACACGCACCATCACCAATCTCGTCGGATATGGCCCA
CGAAGGTTATTATTGTAGCCCGCGAGGAGGAGGATTAGGAGGTATGTATG
TGTGTGTGTTGGTGTCTGTCAGGAGCTGCTGCCTCAGCTGCTGTCTCAGC
ACGTCAGGAGGAGCTGGGCTGTGTGTGTGTGTCATGTTGCGAAACGTTTT
TTTGTTTTGTCAAGCAAAAAATAAAGCTGACATCGTTGCACGGCTGTTCA
TGTCAAACAGCCCGAAGTGTGGTGACGTTTCACGACAGCAGACAGTTTTG
ACAGTTCAACAGTCTGAAGAGCCCGGCACAGCGACCGACCTGAAAAACTG
AATGGTTCTCAGTAGACACGCACCATCACCAATCTCGTCGGATATGGCCC
ACGAAGGTTATTATTGTAGCCCGCGAGGAGGAGGATTAGGAGGTATGTAT
GTGTGTGTGTTGGTGTCTGTCAGGAGCTGCTGCCTCAGCTGCTGTCTCAG
CACGTCAGGAGGAGCTGGGCTGTGTGTGTGTGTCATGTTGCGAAACGTTT
TTTTGTTTTGTCAAGCAAAAAATAAAGCTGACATCGTTGCACGGCTGTTC
ATGTCAAACAGCCCGAAGTGTGGTGACGTTTCACGACAGCAGACAGTTTT
GACAGTTCAACAGTCTGAAGAGCCCGGCACAGCGACCGACCTGAAAAACT
GA
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