mRNA_D-herbacea_M_contig947.15982.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig947.15982.1
Unique NamemRNA_D-herbacea_M_contig947.15982.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig947.15982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig947contigD-herbacea_M_contig947:30338..30813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935771.408253-CDS-D-herbacea_M_contig947:30337..305391622935771.408253-CDS-D-herbacea_M_contig947:30337..30539Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig947 30338..30539 +
1690880697.0626853-CDS-D-herbacea_M_contig947:30337..305391690880697.0626853-CDS-D-herbacea_M_contig947:30337..30539Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig947 30338..30539 +
1622935771.426713-CDS-D-herbacea_M_contig947:30733..308131622935771.426713-CDS-D-herbacea_M_contig947:30733..30813Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig947 30734..30813 +
1690880697.075476-CDS-D-herbacea_M_contig947:30733..308131690880697.075476-CDS-D-herbacea_M_contig947:30733..30813Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig947 30734..30813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig947.15982.1prot_D-herbacea_M_contig947.15982.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig947 30338..30813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig947.15982.1

>prot_D-herbacea_M_contig947.15982.1 ID=prot_D-herbacea_M_contig947.15982.1|Name=mRNA_D-herbacea_M_contig947.15982.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=94bp
KIPVAAARRVCKGRHPVTSPLGTAAPQLVFSLRLQSKDSAVQQASRVRRH
TSFLRTLHVDAAGSSRTRCRKLCDKKSKALWTKFSEAQRLIIKI
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mRNA from alignment at D-herbacea_M_contig947:30338..30813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig947.15982.1 ID=mRNA_D-herbacea_M_contig947.15982.1|Name=mRNA_D-herbacea_M_contig947.15982.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=476bp|location=Sequence derived from alignment at D-herbacea_M_contig947:30338..30813+ (Desmarestia herbacea DmunM male)
AAAATCCCGGTGGCTGCTGCACGCCGTGTTTGTAAGGGTCGACATCCTGT
TACCTCGCCTCTTGGAACTGCAGCCCCTCAGTTGGTGTTTTCGCTTAGGT
TGCAATCGAAGGATAGCGCAGTACAACAAGCAAGCAGAGTGAGGCGACAC
ACATCCTTTCTGAGGACTCTGCATGTAGACGCTGCCGGCAGCTCGCGAAC
TCGTACGTGCCCGCTTATGTAATAGATCCTTTACGACCATAAGCACACAC
TCATCTCTAAAAATGAGTTCGCGGACAGCCATCAGCAAGAGACAGGGTTG
CTCGTGTCCTGCCTGAACTCGTTGTGTTGATCGGACAAAATGATGATGGT
AGATATGACCCCTAAGTTGCGTGAATTTCCCGTTTGATGAAAACAGGGTG
CCGTAAACTCTGTGACAAAAAGTCGAAGGCTCTCTGGACGAAGTTCTCTG
AAGCGCAGCGACTCATCATCAAGATT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig947:30338..30813+

>mRNA_D-herbacea_M_contig947.15982.1 ID=mRNA_D-herbacea_M_contig947.15982.1|Name=mRNA_D-herbacea_M_contig947.15982.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=564bp|location=Sequence derived from alignment at D-herbacea_M_contig947:30338..30813+ (Desmarestia herbacea DmunM male)
AAAATCCCGGTGGCTGCTGCACGCCGTGTTTGTAAGGGTCGACATCCTGT
TACCTCGCCTCTTGGAACTGCAGCCCCTCAGTTGGTGTTTTCGCTTAGGT
TGCAATCGAAGGATAGCGCAGTACAACAAGCAAGCAGAGTGAGGCGACAC
ACATCCTTTCTGAGGACTCTGCATGTAGACGCTGCCGGCAGCTCGCGAAC
TCAAAATCCCGGTGGCTGCTGCACGCCGTGTTTGTAAGGGTCGACATCCT
GTTACCTCGCCTCTTGGAACTGCAGCCCCTCAGTTGGTGTTTTCGCTTAG
GTTGCAATCGAAGGATAGCGCAGTACAACAAGCAAGCAGAGTGAGGCGAC
ACACATCCTTTCTGAGGACTCTGCATGTAGACGCTGCCGGCAGCTCGCGA
ACTCGGTGCCGTAAACTCTGTGACAAAAAGTCGAAGGCTCTCTGGACGAA
GTTCTCTGAAGCGCAGCGACTCATCATCAAGATTGGTGCCGTAAACTCTG
TGACAAAAAGTCGAAGGCTCTCTGGACGAAGTTCTCTGAAGCGCAGCGAC
TCATCATCAAGATT
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