mRNA_D-herbacea_M_contig94.15978.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15978.1
Unique NamemRNA_D-herbacea_M_contig94.15978.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.570e-19
Identity = 52/102 (50.98%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHA---RATHTLKIGRSLPIVRPSALTWHLDPETFQPITGV 306
            C+ A  VALNQ C G EKRWY STLELQL SL FC ACR VP LHV+V + T  SL SP  SHA   + +    +   +P V+ S LTW LD E     + V
Sbjct:   17 CLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAV 118          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.390e-17
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVS----HARATHTLK 222
            C+DA  VALNQ C G EKRWY STLELQL SL FC ACR VP LHV+V + T  SL SPR +    H R+   L+
Sbjct:   41 CLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKVLE 115          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.640e-17
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHARA---THTLKIGRSLPIVRPSALTWHLDPE 282
            C+DA  +AL+Q C GGEKRWY STLELQL SL  C ACR   +LHV V   T  SL S R +  R    +  L I   +P+VR   LTW L  E
Sbjct:   11 CLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSME 104          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-15
Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHARATHT---LKIGRSLPIVRPSALTWHLDPETFQ 291
            C+DA  VALNQ C G EKRWYVSTLELQL SL  C ACR V  LHV+V   T  SL  P  +H    +    + I   +P+V+   LTW L     Q
Sbjct:    9 CLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQ 105          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.030e-15
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   13 IDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGT---VLSLRSPRVSHARATHTLKIGRSLPIVRPSALTWHLDPETF--------QPIT---------------GVVWPASLQQLSF 339
            +D L VALNQ C G EKRWYVSTLELQL SL  C ACR+  +LHV V + T   + S R+ R + ++ +  +     +P V+    TW L  +          QP+T                VVWP SL++L F
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVF 224          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.400e-14
Identity = 56/162 (34.57%), Postives = 69/162 (42.59%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHA---RATHTLKIGRSLPIVRPSALTWHLDPETFQP-------------------------------------------ITGVVWPASLQQLSFGDEFNE 357
            C+DA  VAL Q   G  KRWYVSTLELQL SL FC ACR+     V++ + T  SL SPR SH    + +    I   +P V+ +   W L  E   P                                           +  V WPA LQ+LSFGD FN+
Sbjct:   29 CLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQ 190          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.090e-13
Identity = 51/131 (38.93%), Postives = 63/131 (48.09%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHARATHTLKIGRSLPIVRPSALTWHLDPET-----------------------FQPITGVVWPASLQQL 333
            C+DA  VAL+Q   GGEKRWY STL+LQLASL FC ACR+ P+LHV V   T  +L S      +A  T      +P V+   LTW    E+                          +  VVWP  LQ+L
Sbjct:    9 CLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSL----GQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRL 135          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.950e-11
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   10 CIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLR-SPRVSHARATHTLKIGRSLPIVRPSALTWHLDPETFQPITGVVWPASLQQLSFGDEFNE 357
            C+DA  VALNQ C G  K+WY S   LQLASLAFC ACR V    + V +GT L L   P  +      T+     +P +R   + W L         G+  P+SL++++FG +FN+
Sbjct:   36 CLDAFVVALNQSCDG--KKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWCGPCTTPLEVLTTVT---RVPAIRVREVVWKLTERK----DGIALPSSLRRITFGRDFNQ 143          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.090e-10
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   13 IDALTVALNQFCA-GGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHARATHTLKIGRSLPIVRPSALTWHLDPETFQPITGVVWPASLQQLSFGDEFN 354
            +D + V LNQ C  GG+K W+ ST ELQLASL  CEACR    LH++V   T L L +P  S +  +     G  +P +R   ++W L     +  + +   AS Q  +F D  N
Sbjct:   30 LDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE---GTRVPRLRAREVSWDLTSAD-RLSSSIYALASAQVFTFSDSLN 140          
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.530e-10
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   16 DALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVKVAQGTVLSLRSPRVSHARATHT 216
            DAL +A++Q   G  KRWY STLEL+LASL  C ACR VP +HV+V   T  SL SP     RA HT
Sbjct:   11 DALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRA-HT 76          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KLV1_9PHAE1.570e-1950.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI2.390e-1758.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE3.640e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE1.490e-1548.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI4.030e-1538.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8K9_9PHAE5.400e-1434.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V9_9PHAE2.090e-1338.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF56_9PHAE5.950e-1139.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U4_9PHAE2.090e-1037.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE6.530e-1055.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:1041411..1042262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935770.6714296-CDS-D-herbacea_M_contig94:1041410..10416971622935770.6714296-CDS-D-herbacea_M_contig94:1041410..1041697Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1041411..1041697 +
1690880696.7186565-CDS-D-herbacea_M_contig94:1041410..10416971690880696.7186565-CDS-D-herbacea_M_contig94:1041410..1041697Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1041411..1041697 +
1622935770.68776-CDS-D-herbacea_M_contig94:1041901..10422621622935770.68776-CDS-D-herbacea_M_contig94:1041901..1042262Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1041902..1042262 +
1690880696.7327332-CDS-D-herbacea_M_contig94:1041901..10422621690880696.7327332-CDS-D-herbacea_M_contig94:1041901..1042262Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1041902..1042262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15978.1prot_D-herbacea_M_contig94.15978.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 1041411..1042262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15978.1

>prot_D-herbacea_M_contig94.15978.1 ID=prot_D-herbacea_M_contig94.15978.1|Name=mRNA_D-herbacea_M_contig94.15978.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=216bp
PALCIDALTVALNQFCAGGEKRWYVSTLELQLASLAFCEACRAVPVLHVK
VAQGTVLSLRSPRVSHARATHTLKIGRSLPIVRPSALTWHLDPETFQPIT
GVVWPASLQQLSFGDEFNEPIAGVVWPASLQQLTFGRDFNQPITGVGWPA
SLQKLSFGEEGDFNHPYDFYVGGYEGRFNQPIAGVVWPASLQQLSFGWSF
NQPITGVVWPASLQQL
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mRNA from alignment at D-herbacea_M_contig94:1041411..1042262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15978.1 ID=mRNA_D-herbacea_M_contig94.15978.1|Name=mRNA_D-herbacea_M_contig94.15978.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=852bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1041411..1042262+ (Desmarestia herbacea DmunM male)
CCGGCCCTGTGCATCGACGCCTTGACCGTCGCCCTGAACCAATTTTGCGC GGGAGGGGAGAAGCGCTGGTACGTGTCTACGCTGGAACTGCAGCTTGCGT CACTGGCCTTCTGTGAGGCTTGCCGGGCGGTCCCCGTGCTCCACGTGAAA GTCGCGCAGGGAACTGTCTTAAGTTTGCGGTCGCCTCGTGTATCACATGC GCGGGCGACGCACACACTCAAGATTGGGAGAAGCTTGCCGATCGTCAGGC CGTCTGCTTTGACGTGGCACCTCGATCCAGAAACGTTGTTCGAGACGCTC GAGACCAACCTGTACACGGGCCTGGAGAGCTTTTCTCTATCGCCGAGCGG GCAGTCGGTGAAACCGTTGTTCGATACGCTCGAGAGCATATCTCTATCGC CGAGCTATATGTCGTCGATTGGGAGCCTGAACGGGGTGCTGTGGCCACCG TTTCTGGTGAAGCTGTCATTCGGCCAAGGCGTCTGGTTCAGCCAGCCCAT CACCGGAGTCGTGTGGCCGGCTTCGCTGCAGCAGCTATCGTTTGGGGACG AGTTCAACGAGCCCATCGCCGGAGTTGTGTGGCCGGCGTCGCTGCAACAG CTGACGTTCGGGCGCGATTTCAATCAGCCCATCACCGGAGTCGGGTGGCC GGCGTCGCTGCAGAAACTATCGTTCGGGGAAGAAGGCGATTTCAACCACC CCTACGACTTCTATGTGGGCGGGTATGAAGGCCGTTTCAACCAGCCCATC GCCGGAGTCGTGTGGCCGGCGTCGCTGCAACAGCTATCGTTCGGGTGGAG CTTCAACCAGCCCATCACAGGAGTTGTGTGGCCGGCGTCGCTGCAACAGC TG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:1041411..1042262+

>mRNA_D-herbacea_M_contig94.15978.1 ID=mRNA_D-herbacea_M_contig94.15978.1|Name=mRNA_D-herbacea_M_contig94.15978.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1296bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1041411..1042262+ (Desmarestia herbacea DmunM male)
CCGGCCCTGTGCATCGACGCCTTGACCGTCGCCCTGAACCAATTTTGCGC
GGGAGGGGAGAAGCGCTGGTACGTGTCTACGCTGGAACTGCAGCTTGCGT
CACTGGCCTTCTGTGAGGCTTGCCGGGCGGTCCCCGTGCTCCACGTGAAA
GTCGCGCAGGGAACTGTCTTAAGTTTGCGGTCGCCTCGTGTATCACATGC
GCGGGCGACGCACACACTCAAGATTGGGAGAAGCTTGCCGATCGTCAGGC
CGTCTGCTTTGACGTGGCACCTCGATCCAGAAACGTTCCGGCCCTGTGCA
TCGACGCCTTGACCGTCGCCCTGAACCAATTTTGCGCGGGAGGGGAGAAG
CGCTGGTACGTGTCTACGCTGGAACTGCAGCTTGCGTCACTGGCCTTCTG
TGAGGCTTGCCGGGCGGTCCCCGTGCTCCACGTGAAAGTCGCGCAGGGAA
CTGTCTTAAGTTTGCGGTCGCCTCGTGTATCACATGCGCGGGCGACGCAC
ACACTCAAGATTGGGAGAAGCTTGCCGATCGTCAGGCCGTCTGCTTTGAC
GTGGCACCTCGATCCAGAAACGTTCCAGCCCATCACCGGAGTCGTGTGGC
CGGCTTCGCTGCAGCAGCTATCGTTTGGGGACGAGTTCAACGAGCCCATC
GCCGGAGTTGTGTGGCCGGCGTCGCTGCAACAGCTGACGTTCGGGCGCGA
TTTCAATCAGCCCATCACCGGAGTCGGGTGGCCGGCGTCGCTGCAGAAAC
TATCGTTCGGGGAAGAAGGCGATTTCAACCACCCCTACGACTTCTATGTG
GGCGGGTATGAAGGCCGTTTCAACCAGCCCATCGCCGGAGTCGTGTGGCC
GGCGTCGCTGCAACAGCTATCGTTCGGGTGGAGCTTCAACCAGCCCATCA
CAGGAGTTGTGTGGCCGGCGTCGCTGCAACAGCTGCCAGCCCATCACCGG
AGTCGTGTGGCCGGCTTCGCTGCAGCAGCTATCGTTTGGGGACGAGTTCA
ACGAGCCCATCGCCGGAGTTGTGTGGCCGGCGTCGCTGCAACAGCTGACG
TTCGGGCGCGATTTCAATCAGCCCATCACCGGAGTCGGGTGGCCGGCGTC
GCTGCAGAAACTATCGTTCGGGGAAGAAGGCGATTTCAACCACCCCTACG
ACTTCTATGTGGGCGGGTATGAAGGCCGTTTCAACCAGCCCATCGCCGGA
GTCGTGTGGCCGGCGTCGCTGCAACAGCTATCGTTCGGGTGGAGCTTCAA
CCAGCCCATCACAGGAGTTGTGTGGCCGGCGTCGCTGCAACAGCTG
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