mRNA_D-herbacea_M_contig94.15977.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15977.1
Unique NamemRNA_D-herbacea_M_contig94.15977.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5L9U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9U0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.880e-9
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   10 AAMQNSTNEGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            A  Q ST EG R FQ + TA A    DVD+AP+V+ +R+A  LGVRE+AF+ A + AK+L +D+ P  +  R
Sbjct:   69 AQKQRSTKEGSRTFQMILTAAAFPVDDVDEAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQPTEEIKR 140
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5JQZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 8.190e-8
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 LASAAMQNSTNEGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            L  A  Q  T EG   FQT+ TA ++   DVD AP+V+ +R+A  LGVRE+AF+ A + AK+L +D+ P T++++
Sbjct:  172 LEQAQRQRRTKEGSHTFQTILTAASYPVDDVDGAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQP-TEAIK 245
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5KRE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.150e-7
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    1 LASAAMQNSTNEGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            L  A  Q    EG R FQT+ TA A    DVD AP+V+ +R+A  LGVRE+AF+ A + AK+L +D+ P T++++
Sbjct:   45 LEQAQRQRRIKEGSRTFQTILTAAAFPVDDVDGAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQP-TEAIK 118
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.600e-7
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    1 LASAAMQNSTNEGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            L  A  Q  T EG R FQT+ TA A    DVD AP+V+ +R+A  LGVRE+AF+ A + AK++ +D  P T++++
Sbjct:   45 LEQAQRQRRTKEGSRTFQTILTAAAFPVDDVDWAPSVSARRRAAALGVREQAFNFAAERAKKMLSDRQP-TEAIK 118
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.580e-7
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 LASAAMQNSTNEGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            L  A  Q  T EG R FQT+ TA A    DVD  P+V+ +R+A  L VRE+AF+ A + AK+L +D+ P T++++
Sbjct:  206 LEQAQRQRRTKEGSRTFQTILTAAAFPVDDVDGTPSVSARRRAAALDVREQAFNFAAERAKKLLSDLQP-TEAIK 279
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BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Match: A0A6H5JQ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ62_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   34 EGGRIFQTLHTAVAH---DVDQAPTVTVKRQADLLGVRERAFSEARQWAKRLNADIHPMTQSVR 216
            EG R FQ + TA A    DVD AP+V+ +R A  LGVRE+AF+ A + AK+L +D+ P T++++
Sbjct:   35 EGSRTFQPILTAAAFPVDDVDGAPSVSARRTAAALGVREQAFNFAAEPAKKLLSDLQP-TEAIK 97
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L9U0_9PHAE7.880e-947.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQZ3_9PHAE8.190e-844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRE5_9PHAE1.150e-745.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE1.600e-745.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT7_9PHAE5.580e-744.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ62_9PHAE1.260e-546.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:1010892..1011150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size259
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15977.1prot_D-herbacea_M_contig94.15977.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 1010907..1011137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935770.5974464-UTR-D-herbacea_M_contig94:1010891..10109061622935770.5974464-UTR-D-herbacea_M_contig94:1010891..1010906Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1010892..1010906 +
1690880696.6770108-UTR-D-herbacea_M_contig94:1010891..10109061690880696.6770108-UTR-D-herbacea_M_contig94:1010891..1010906Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1010892..1010906 +
1622935770.6279883-UTR-D-herbacea_M_contig94:1011137..10111501622935770.6279883-UTR-D-herbacea_M_contig94:1011137..1011150Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1011138..1011150 +
1690880696.7029886-UTR-D-herbacea_M_contig94:1011137..10111501690880696.7029886-UTR-D-herbacea_M_contig94:1011137..1011150Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1011138..1011150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935770.6132593-CDS-D-herbacea_M_contig94:1010906..10111371622935770.6132593-CDS-D-herbacea_M_contig94:1010906..1011137Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1010907..1011137 +
1690880696.688472-CDS-D-herbacea_M_contig94:1010906..10111371690880696.688472-CDS-D-herbacea_M_contig94:1010906..1011137Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1010907..1011137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15977.1

>prot_D-herbacea_M_contig94.15977.1 ID=prot_D-herbacea_M_contig94.15977.1|Name=mRNA_D-herbacea_M_contig94.15977.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=77bp
MQNSTNEGGRIFQTLHTAVAHDVDQAPTVTVKRQADLLGVRERAFSEARQ
WAKRLNADIHPMTQSVRARTDSNPVL*
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mRNA from alignment at D-herbacea_M_contig94:1010892..1011150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15977.1 ID=mRNA_D-herbacea_M_contig94.15977.1|Name=mRNA_D-herbacea_M_contig94.15977.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=259bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1010892..1011150+ (Desmarestia herbacea DmunM male)
CTGGCGAGCGCGGCAATGCAAAATTCCACCAACGAGGGGGGGCGAATATT
CCAAACACTTCACACGGCCGTCGCTCACGACGTGGACCAAGCTCCAACAG
TGACGGTCAAAAGGCAGGCCGACCTTTTGGGCGTTCGCGAGAGAGCGTTC
TCTGAAGCACGTCAATGGGCGAAGCGATTAAATGCCGACATCCATCCGAT
GACGCAATCCGTGAGGGCGCGTACTGATTCGAACCCCGTGCTATGAGCAA
GGATGCCAC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:1010892..1011150+

>mRNA_D-herbacea_M_contig94.15977.1 ID=mRNA_D-herbacea_M_contig94.15977.1|Name=mRNA_D-herbacea_M_contig94.15977.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=462bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1010892..1011150+ (Desmarestia herbacea DmunM male)
ATGCAAAATTCCACCAACGAGGGGGGGCGAATATTCCAAACACTTCACAC
GGCCGTCGCTCACGACGTGGACCAAGCTCCAACAGTGACGGTCAAAAGGC
AGGCCGACCTTTTGGGCGTTCGCGAGAGAGCGTTCTCTGAAGCACGTCAA
TGGGCGAAGCGATTAAATGCCGACATCCATCCGATGACGCAATCCGTGAG
GGCGCGTACTGATTCGAACCCCGTGCTATGAATGCAAAATTCCACCAACG
AGGGGGGGCGAATATTCCAAACACTTCACACGGCCGTCGCTCACGACGTG
GACCAAGCTCCAACAGTGACGGTCAAAAGGCAGGCCGACCTTTTGGGCGT
TCGCGAGAGAGCGTTCTCTGAAGCACGTCAATGGGCGAAGCGATTAAATG
CCGACATCCATCCGATGACGCAATCCGTGAGGGCGCGTACTGATTCGAAC
CCCGTGCTATGA
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