mRNA_D-herbacea_M_contig94.15973.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15973.1
Unique NamemRNA_D-herbacea_M_contig94.15973.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: D7FLG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG4_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.480e-82
Identity = 143/223 (64.13%), Postives = 166/223 (74.44%), Query Frame = 2 
Query:  740 LDFKKVVPALIKQGAVFFMGTWLAKKLSPAVEGQVRTARVIYTGYLIFSQALCMYLRYLIWLKDDDTEMEVPPPAQLKKMMEGVGGAGAGAGDVTGAATAGGATAATADGAGGGASMLGPMLDKILTSKTPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQGLMSTLQGPMEGMATKAEA 1408
            +D K V+P  IKQ A F +  WL K LSP VE QVR AR IYT YLI SQALCMY+RYLIW K DDTE+EVPPPAQLKK+++  G AG     VTG     GA AAT       AS LGP++DK++TS+  VKKYDM  +Q +RR QFWASL MCYTHLR+GMIKPMM QVSFG+LSL D+PL  IY+LG+ A+G+LARPFKKQGLM +L GPME MATKA A
Sbjct:    4 VDLKVVLPQAIKQLAFFLLARWLNKSLSPTVESQVRAARAIYTVYLIVSQALCMYIRYLIWKKGDDTEVEVPPPAQLKKLIQDAGKAG-----VTGNE---GAPAATXXXXXXXASPLGPVMDKMMTSRMAVKKYDMKFIQGVRRRQFWASLMMCYTHLRRGMIKPMMFQVSFGVLSLLDNPLVHIYLLGREAKGNLARPFKKQGLMESLSGPMETMATKAAA 218
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A6H5KF45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF45_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 2.720e-79
Identity = 199/462 (43.07%), Postives = 252/462 (54.55%), Query Frame = 2 
Query:  122 SMPRRHQGLP---GCILLVAAAVTV------------WSSPPRVATGSSNSNVQASCGAMPVCVAAASTTAVSPSSQARRGAWGAAPRSWVSRRRR-----EGVDVRRSRASS------SSTGTACGAADGACDASFAPLWIRARGGA-GTR-VDGRPLSAEGEDKEXXXXXXDASSVRDGVDTVGDIVDDTSSEDHQSESLDAESGATQADGQDAADQGEGTSPVGTPTGGQE-----LDFKKVVPALIKQGAVFFMGTWLAKKLSPAVEGQVRTARVIYTGYLIFSQALCMYLRYLIWLKDDDTEMEVPPPAQLKKMMEGVGGAGAGAGDVTGAATAGGATAATADGAGGGASMLGPMLDKILTSKTPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQGLMSTLQGPMEGMATKAEA 1408
            +MPRR +      G + LVAAA TV            W+  P     SS+S++ +S       + AA     +  S+ RRG WGA P S +  RRR      G D  RS  +        +TG++C          F P+W+RARGGA G R V G+     G+ +E      D  +                           +      +G+DA D+ E   P   P+G +      ++ K V+P  IKQ A F +  WL   LSP VE QVR AR IYT YL+ SQALCMY+RYLIW KDDD E+EVPPPAQLKK+++  G AG     VTG     GA A         AS LGP++DK++TS+  VKKYDM  +Q +RR QFWASL MCYTHLR+GMIKPMM QVSFG+LS  D+PL  IY+LG+ A+G+LARPFKKQGLM +L G ME MATKA A
Sbjct:    7 AMPRRDRETTRFRGQLFLVAAAATVXXXXXXXXXXGRWT--PGSTARSSSSSISSSTLPSSAELTAAPAALYAEKSRPRRG-WGAIPTSLIFGRRRGPVRHPGSDDDRSDIAHHRCLPHDTTGSSC--------VMFPPVWVRARGGAVGKRAVGGKRAPPAGQAQEE-----DGEAXXXXXXXXXXXXXXXXXXXXXXXXXXVDEAXXAGEGEDAGDEAEEKDP--EPSGQEASVMDTVNLKVVLPQAIKQLAFFLLARWLNMSLSPKVESQVRAARAIYTVYLMVSQALCMYIRYLIWKKDDDAEVEVPPPAQLKKLIQDAGKAG-----VTGNE---GAAATXXXXXXXAASPLGPVMDKMMTSRMAVKKYDMKFIQGVRRRQFWASLMMCYTHLRRGMIKPMMFQVSFGVLSFLDNPLVHIYLLGREAKGNLARPFKKQGLMESLSGSMEAMATKAAA 442
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: F0YP71_AURAN (Uncharacterized protein HYP6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP71_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.660e-9
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 2 
Query: 1061 ADGAGGGASMLGPMLDKILTSKTPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPF 1342
            ADG   G  + G ++DK+ + +T V+ YD++ V+  R SQ  +   MC+ H++KGM++P++ Q   G+ +L   PL + ++LG+    DL RPF
Sbjct:   10 ADGGDAG-GVAGALVDKLTSKETTVRDYDLDMVKKGRNSQLGSLALMCFLHIKKGMVQPLVAQAVMGVAALVKEPLVQAHLLGR----DLERPF 98
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A5C2RWL1_9APHY (Inorganic phosphate transporter n=4 Tax=Polyporaceae TaxID=5317 RepID=A0A5C2RWL1_9APHY)

HSP 1 Score: 63.2 bits (152), Expect = 5.820e-8
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 2 
Query: 1109 KILTSKTPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQGLMSTLQGPMEGMATKAEA 1408
            K++T  T V+ YD+     L R+ ++    M + HL     +P+ +Q   G+ +L+D    +I+++GQAAEGDL RPFK  G+      P    A   EA
Sbjct:   79 KLIT--TTVRDYDLAETSKLMRAVYFGCAMMAFMHLYLKYTQPLFIQALMGLKTLYDAKPVRIHLIGQAAEGDLKRPFKAGGMFGAASDPQTDKAAIDEA 176
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: W4K9V0_HETIT (Inorganic phosphate transporter n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K9V0_HETIT)

HSP 1 Score: 59.7 bits (143), Expect = 9.200e-7
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 2 
Query: 1127 TPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFK 1345
            T V+ YD+     L R+ + +   M + HL     +P+ +Q   GI  L++    KI++LGQAAEGDL RPFK
Sbjct:   82 TTVRDYDLTETSKLVRAAYTSIAMMAFLHLYLKYTQPLFVQAIMGIKGLYEAKTVKIHILGQAAEGDLKRPFK 154
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A1C7M671_GRIFR (Inorganic phosphate transport protein PHO88 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7M671_GRIFR)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-5
Identity = 32/94 (34.04%), Postives = 43/94 (45.74%), Query Frame = 2 
Query: 1127 TPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQGLMSTLQGPMEGMATKAEA 1408
            T V+ YD+     L R  +     M + HL     +P+ +Q      +L+D     I++ GQAAEGDL RPFK  GL      P    A   EA
Sbjct:   81 TTVRDYDLAETSKLVRGVYTGLAMMAFLHLYLKYTQPLFIQALMAFKTLYDAKPVAIHLFGQAAEGDLKRPFKSAGLFGATANPQTDKAAIDEA 174
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A5N6KE19_MONLA (Uncharacterized protein n=1 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6KE19_MONLA)

HSP 1 Score: 57.0 bits (136), Expect = 4.640e-5
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2 
Query: 1127 TPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQ-GLMSTLQG 1375
            T V KYD + +++L ++Q      M   HL      P+M+Q    +   F+    KI++ GQAA GDL RPFK   GLMS+LQG
Sbjct:  326 TTVHKYDSDQMKALYKAQLMGVGMMAVMHLYFKYTNPLMIQSIIPLKGAFEGNEVKIHLFGQAAAGDLKRPFKAPAGLMSSLQG 409
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A2B7XAA9_9EURO (Uncharacterized protein n=1 Tax=Helicocarpus griseus UAMH5409 TaxID=1447875 RepID=A0A2B7XAA9_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 5.070e-5
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 2 
Query: 1127 TPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKK-QGLMSTLQGPME 1384
            T V+ YD   +++L + Q      MC  HL      P+++Q    + +  +  L KI+V GQAA+GDL RP+K  QG M   QG ++
Sbjct:   84 TTVQDYDKQQLRTLLKGQLMGVGMMCVMHLYFKYTNPLVIQSIIPLKTALEGNLIKIHVFGQAAKGDLERPWKAAQGFMGMTQGEVK 170
[Close]
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Match: A0A2B7YJU0_9EURO (Uncharacterized protein n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7YJU0_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 7.190e-5
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 2 
Query: 1127 TPVKKYDMNTVQSLRRSQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEGDLARPFKKQG-LMSTLQGPMEGMATKAEAA 1411
            T  ++YD   +++L +SQ      MC  HL      P+++Q         +  L KI+V GQAA+GDL RP+K  G LM   QG ++      EAA
Sbjct:   68 TTAQEYDRQQLRALFKSQLMGVGMMCVMHLYFKYTNPLVIQSIIPFKGALEGNLIKIHVFGQAAKGDLERPWKASGGLMGMGQGAVKSDKASIEAA 163
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FLG4_ECTSI1.480e-8264.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF45_9PHAE2.720e-7943.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YP71_AURAN1.660e-936.17Uncharacterized protein HYP6 n=1 Tax=Aureococcus a... [more]
A0A5C2RWL1_9APHY5.820e-834.00Inorganic phosphate transporter n=4 Tax=Polyporace... [more]
W4K9V0_HETIT9.200e-739.73Inorganic phosphate transporter n=1 Tax=Heterobasi... [more]
A0A1C7M671_GRIFR1.010e-534.04Inorganic phosphate transport protein PHO88 n=1 Ta... [more]
A0A5N6KE19_MONLA4.640e-540.48Uncharacterized protein n=1 Tax=Monilinia laxa Tax... [more]
A0A2B7XAA9_9EURO5.070e-535.63Uncharacterized protein n=1 Tax=Helicocarpus grise... [more]
A0A2B7YJU0_9EURO7.190e-535.42Uncharacterized protein n=1 Tax=Polytolypa hystric... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:938719..944988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog130081.XP_005705174.1
Preferred namePHO88
KEGG koko:K01166
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0006605,GO:0006807,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006886,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0010467,GO:0012505,GO:0015031,GO:0015698,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827,GO:1901564
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5065@1,KOG4554@2759
Ec32 ortholog descriptionInorganic phosphate transporter Pho88
Ec32 orthologEc-17_001270.1
EC3.1.27.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons5
Model size1461
Cds size1335
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15973.1prot_D-herbacea_M_contig94.15973.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 938843..944988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935769.9940984-UTR-D-herbacea_M_contig94:938718..9388421622935769.9940984-UTR-D-herbacea_M_contig94:938718..938842Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 938719..938842 +
1690880696.3358386-UTR-D-herbacea_M_contig94:938718..9388421690880696.3358386-UTR-D-herbacea_M_contig94:938718..938842Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 938719..938842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935770.0091057-CDS-D-herbacea_M_contig94:938842..9396271622935770.0091057-CDS-D-herbacea_M_contig94:938842..939627Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 938843..939627 +
1690880696.3560915-CDS-D-herbacea_M_contig94:938842..9396271690880696.3560915-CDS-D-herbacea_M_contig94:938842..939627Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 938843..939627 +
1622935770.0250611-CDS-D-herbacea_M_contig94:941244..9414281622935770.0250611-CDS-D-herbacea_M_contig94:941244..941428Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 941245..941428 +
1690880696.3652925-CDS-D-herbacea_M_contig94:941244..9414281690880696.3652925-CDS-D-herbacea_M_contig94:941244..941428Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 941245..941428 +
1622935770.0415416-CDS-D-herbacea_M_contig94:943102..9432581622935770.0415416-CDS-D-herbacea_M_contig94:943102..943258Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 943103..943258 +
1690880696.374629-CDS-D-herbacea_M_contig94:943102..9432581690880696.374629-CDS-D-herbacea_M_contig94:943102..943258Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 943103..943258 +
1622935770.057919-CDS-D-herbacea_M_contig94:943748..9438981622935770.057919-CDS-D-herbacea_M_contig94:943748..943898Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 943749..943898 +
1690880696.3869534-CDS-D-herbacea_M_contig94:943748..9438981690880696.3869534-CDS-D-herbacea_M_contig94:943748..943898Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 943749..943898 +
1622935770.076507-CDS-D-herbacea_M_contig94:944928..9449881622935770.076507-CDS-D-herbacea_M_contig94:944928..944988Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 944929..944988 +
1690880696.405763-CDS-D-herbacea_M_contig94:944928..9449881690880696.405763-CDS-D-herbacea_M_contig94:944928..944988Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 944929..944988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15973.1

>prot_D-herbacea_M_contig94.15973.1 ID=prot_D-herbacea_M_contig94.15973.1|Name=mRNA_D-herbacea_M_contig94.15973.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=445bp
MPRRHQGLPGCILLVAAAVTVWSSPPRVATGSSNSNVQASCGAMPVCVAA
ASTTAVSPSSQARRGAWGAAPRSWVSRRRREGVDVRRSRASSSSTGTACG
AADGACDASFAPLWIRARGGAGTRVDGRPLSAEGEDKEEEEEEQDASSVR
DGVDTVGDIVDDTSSEDHQSESLDAESGATQADGQDAADQGEGTSPVGTP
TGGQELDFKKVVPALIKQGAVFFMGTWLAKKLSPAVEGQVRTARVIYTGY
LIFSQALCMYLRYLIWLKDDDTEMEVPPPAQLKKMMEGVGGAGAGAGDVT
GAATAGGATAATADGAGGGASMLGPMLDKILTSKTPVKKYDMNTVQSLRR
SQFWASLFMCYTHLRKGMIKPMMLQVSFGILSLFDHPLFKIYVLGQAAEG
DLARPFKKQGLMSTLQGPMEGMATKAEAARAAAEASVASTANASS
back to top

mRNA from alignment at D-herbacea_M_contig94:938719..944988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15973.1 ID=mRNA_D-herbacea_M_contig94.15973.1|Name=mRNA_D-herbacea_M_contig94.15973.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=6270bp|location=Sequence derived from alignment at D-herbacea_M_contig94:938719..944988+ (Desmarestia herbacea DmunM male)
CACACGGCAGACTACCCATTATATAGACAGATAAGACACTGCACGGACGA
GCACTCCCTCCCTGTGCTTTCCACACCTCCATTTCGTGAACAAAGTAACG
TTTTATTGCCCTCTTTGCTCTAGTATGCCACGACGGCACCAAGGTTTACC
GGGGTGCATCCTCCTAGTAGCAGCAGCGGTAACAGTATGGAGTTCGCCGC
CACGCGTAGCCACGGGCAGTAGCAACAGCAACGTCCAAGCATCGTGCGGT
GCGATGCCCGTCTGCGTTGCAGCAGCTTCTACCACAGCAGTATCACCTTC
TTCCCAGGCAAGACGGGGAGCGTGGGGTGCGGCACCTAGGTCTTGGGTGT
CTCGTCGACGACGTGAAGGTGTGGACGTCCGCCGGTCTCGAGCGAGTAGC
AGTAGTACCGGTACCGCCTGTGGAGCAGCAGACGGCGCGTGTGATGCGAG
TTTCGCTCCGTTGTGGATACGAGCACGAGGGGGCGCGGGCACTCGGGTTG
ACGGGCGTCCCTTGAGCGCTGAAGGGGAAGACAAGGAAGAGGAAGAGGAA
GAACAGGATGCTTCCAGTGTACGGGACGGCGTTGACACTGTTGGCGATAT
CGTGGACGATACCAGCAGCGAGGATCATCAATCTGAGTCGCTCGACGCAG
AGAGCGGCGCGACACAGGCCGACGGACAAGACGCAGCCGACCAAGGAGAA
GGAACGAGCCCTGTCGGGACGCCGACAGGGGGGCAGGAATTGGACTTTAA
GAAGGTGGTGCCGGCGTTGATCAAGCAAGGCGCGGTGTTTTTCATGGGGA
CTTGGCTGGCGAAGAAGCTCAGCCCGGCTGTGGAGGGCCAAGTGCGGACG
GCGCGCGTGATTTACACGGGGTACCTCATCTTTTCGCAGGCACTCTGCAT
GTACCTCAGGTGTGTGTTTGTATGTGTTTCGTGTGTGTGTGTGTGTGTGT
GTGTACGCCCGTGTGCCGAATAGGATAGAGCAGTTCATCATGGGGTGATG
GTGATGGTGGTGGTGGTGGTACATGACGAGTCTTGTTGGGTACAATGGTT
GGGTGTTGCTATCGCCACAAGAACTACTACGTAATACGAAGGATTAATAA
TATGAGAGTCTGTTGCTATACGAGTAAGAGTACTACTGTAGCTCATACTA
CTGTAGATGCTTTTGTACTCGTAGACCTAAATTCATGTTGAGCCTGGGCT
CACCCAGGGGAGCTGAGCTACTGCGCTATACCTTATCTGAGGAGCGATAG
GATACGCGGGACCGACGTATCAGACAGTGAAGTTGGCGAGTGAGTATCCC
CTGGACCCCGAACCAGCTTGGAACGTCACGGCTGATGATGATGCTGTTGT
TGTTGTCTTCGCGTGAAAAATCGTCATTTCTACCCTCGACATACAGTAGT
AGCGTACTCAAGAGTCTGTCTGCTGTTTCTGCCATTCTAAAGAGATTCGA
AATTTTCGTCGTCACAAGCTACATAATAGCACCAAATCGCAAATTGAACA
AAAATAAATGAAAGAGAAATAGATTATTACGAAGTATGAGAAGAAACAAA
ACACGAAAGAAGGGAAAGCAGCAACACAAGAAACACAAGCAGAACAGAAA
AACAGGTACACCAGCAGGAGGAAACGACTAGAACAAGAAAGGAGGGAACC
CAAACAAGTATTACAGAGAAAAATGAAGATAATTCAGTACCGTATTGAAC
GAAATTTGGACTGTGAGTAGCTGCGGCAGAGATACGGGGACACGCGGGAG
AAGATATACGCAACACCATCGGTTCTACGAACTTTACTGTGCTTAGTCAC
ATTGAAACGTTGACACTCGGTCCGCCTTGTCCTTACGACTGTCGTCGGCA
GCAGTACTACTGTAGTAATAATGGTACCACTACTGCCGCGTTGCCCCCCC
CACTTTCCCGTTCCTGCGACGTAGGGCCTTGTCAGCCTCTTTTGCGTGGC
GTGCACTACTCCTCGCCGCTTCATCTCTGTTCCACGTCTCCATGAACGTT
TCAACCCCCTCTCGATGGCGGCTGTAGTTCATGGGGTAGTCTCTACTCCA
AAAATCACTTGAGGCGTCTCCGTTGATTCCACAGTGATGGCGCGGAACGC
GGTGAGGTCGTCCAATAGACATTGCATCCAGGTCTTGGCCGGTCTACCTA
GTCCCGGTAGACTCAACCGAACCGTGTCAGAAACTTATTTTTTATTGCTC
CATTTACAGTATAGCGACCACTATGTAGTTTTTGTCACCACGCGGAATTT
CACATCTCTACTACAAAATATCGTTGGTTAATTAGAACAGACTTTGAGCA
CGCTGCTGGGTGTCGTAGCGTAGACAAGACGATTTTTTAGCGCGAAGACA
ACACCAACAGCAAAAATGTTTTGTAGACGCACATGTAGTAGAGGTATCAT
ACGCGGAGATGTAGGTATGATATTGAAGTAATAGTAGGGTGTTATCGTGC
TACGTTCGCGTCTTCTCCGCCGCACACCGCACCGCCGTAACACTGGTCTC
TCGTGTCGACGACGGCGGGCGCCCAGATATCTGATATGGCTGAAGGATGA
CGATACCGAGATGGAAGTACCACCCCCGGCGCAGCTGAAAAAAATGATGG
AGGGAGTCGGAGGCGCGGGGGCGGGAGCGGGCGACGTAACTGGCGCCGCG
ACGGCTGGGGGGGCGACAGCGGCGACGGCGGATGGAGCTGGTGGTGGCGC
TTCCATGCTGGTTAGTGGTTCTTCCCAGACGCGTCTATTAGAAACTATGA
TACGACCAGTAGGCACCACGGCGTTGCCCGTGCAATGTGCGCTCGAAGGG
TGAGTTAAATCCCACCCCAACCCACCCCAACCCAACCCAACATAATACAA
CACGTTTCCCAGACTCTTCTATATACAATTATGATACGATGTGTTATTCA
GTAGGTTTAGCAATATGGTACTATTGGTATTATAGCTCGGATCTTTAGGA
AGGTTTTGACTCTATATTATTTTATGAGTGTGGTCGTTAGGGTTAGTGAT
AGAATTTTCCAAACTGCTGAACAGCCCGTGCTGTAACTAATCATACATCT
AATAAAACGAACGTCCTAGAGACCTGAGCTACCAAAACGTTAGAGCGGCT
CGTGCTATTTACTGTTTCTACGGTACAGAGGTTTTTTTCTACGCTTTTTT
TGACGACTTGGCAGGATGTGATGTTGGACGTTGGATACCGTGACGCACGG
GGTGGACGTATCGTCAAGTCGCCGCAGATGTTAACTGTTTGTATGTTATG
TTGTGACCCCGTTGCTTGGCAGACACGATTGGGTGCACGAAATGACGTTA
TGCAAATACCCACGGGAGATGCATGTCGAATCTGCTTCTGCTTCTGCTTT
TGCTGGTCCTCCTGGTGCTCTGCTTGTGATGCGTGTGTATGACTCTATGC
TGTAAGGCTTCGAGTTTCTCTCTACGTCTATTGTTGTCGACGGCACATAA
TACGCGCGACCGATGTATCGCACAGTAGAGTGAAGCCGGCGATTGTTCCC
TCGCTCACGAACCAGTTTGGAACATGACGTCACGGCTGATTCATTTGAAT
TTTAACAGTATTAATTGCATCCAGGGTGCCGTCGTGTCATTCGCGGTCTG
GTTGCAAACGTGCTGTGCGACGACTACCTCCGTGCCGGTGGATCGCTTTC
TGTGCATCGTAACAAAGCACCTTGAAGGCCCGCGTAGCCCGCCCTTACTC
CGGTCCCACATGTAACACGCCTTCGGGCTGAGGTTGGAAACCCTGTAAAT
TGAAATGCTGAGTAGCATGTGTATATAAAAGAAAGAAAAACGTACGAAAA
TGGCTCGCCTACCTATCCGATCAGCTAAAAATTGAGTTAACGCAAATTAT
GCATACACAAATGCCTCCATCGCGATTTGTTGCCACTGAAAAGTGGCTTC
GAAAGACACCCAACTACACCCCGTGGTTGCTGTGACAGAGGTTTTTTTTC
GTATGTCGTAGGGATCTTCTTTTCAGATAGTATGGGATGAAACGGTGGAA
GCACCTCCCGCAAGGCCGGTACTGCCACCCCGTCGGCGAAACAGCCCCCA
GGGTGCTGGACAGCTCAGGAGCTCTGAGTCCACCACTCTGAGTCTGTCCA
CCGACGTAAAAGAAAAATTGGTTCTGATACCGAACCGAGTGTGCTATATC
TTGACACGGGACTTGCCCCGTGAAACCTTGTTGGGTCTGTCCACCGACGG
AAAATAAAAACTGATTCTGATACCGAACCGAGTGGACTATATTCTGACAC
GGGACCCACCACATGAGACCTATTTACGAGGTGAACAACGGTTCGCTGAT
TGAGTCGAGTGATACTACTGCGTGTCCCCCACCGCCGCTTCTGTTTCCAC
CCGGTGTTGGTTGGAAACCCGCTTATCTCCGCAGGGACCAATGTTGGACA
AGATTTTGACCTCGAAGACCCCTGTGAAGAAGTACGACATGAACACGGTG
CAGAGCTTGCGCCGTTCGCAGTTCTGGGCATCCTTGTTCATGTGCTACAC
ACACCTCCGGAAGGGCATGATCAAGCCTATGATGTTGCAGGTGACTGTTT
AGAGGAGGCGTTTTCGCGAGTCTCCTGCGGTTGGGGATTGGATCTTGGGT
CGTCGCCTCCAATTGGGGATTGGATTTTGGGTCGCCGGCGGTTTGGGACT
GGATCTTGGGGCGACGAGGGGAGGGGGTTGGATCTTGGGTCACCGGCGTT
TGGGGATTGGATCTTCGGGGCGAGGAGGGGGTGTTTCGGTCACAAATGTG
GTGGTTGAAGCCCACTCCGCTCAGCATGATACTATATATACTAGTGTGGT
ATGACATCACGGGGAGGGAGTATAGTATTTTGCGAGGGCATCGATATGTG
CTCACTCTATCCAGTCCGCCGTACTACATCGGTATCGCGTAACGGCACAT
TGCCCCTGTTGACGCCGTCTGCACAACGGTGCTCCGCTCGTCACCTCGGT
AACGCTCAATCCCCCCCCACCCTGCTGTTTTTTTTGTCGCCGACACACAC
GTGATGTCGTCCACCACCCGTCGCCGGTAGGTATCTTTCGGGATCTTGTC
GCTTTTCGACCACCCGCTTTTCAAGATCTACGTGCTGGGGCAGGCGGCCG
AGGGTGACCTGGCCCGGCCATTCAAGAAGCAGGGGCTGATGAGCACCCTC
CAAGGACCGATGGAAGGCATGGCGACCAAGGTAAAAGCAGGAGCATTGCG
TGTCTGTTTTTCTTCTGCTTCTTCGCATGGTTTCCCCCCGGGAATGTGAC
AAGACAGCGCGTGTGATAGCAGGGAAACTTGTTCGGTCTGTATTAACAGC
ACACAGGAAAATACATTTTCGGCATTGTTGGGGCCTACGTGAAGCTCTCG
AGAAACTGTACGCTCGCGAGCCACGATACTCGGAGTGCGACTAATCTCCA
AAGACGGGCCGAGAGGCGGTGCGGTCACCGTGGCTGTGCAGGGCCTATTC
CGCATCTGTTGACGGCACGCGCGATTTCTCCAGTTCATCCCGCACCACAG
ACTACAGAACACGACAAGAATAGGTCATGTGATTGGCTGATAAGTTTTTT
TGTGTCGCCTTGGTTACAATATATTACTCTACTATCGATACGTCACATCA
CTTATGAGCTAAAAAATCGTACGTGACGAGCGTCATAGCCCAACGTAACG
ACGCGTAACGCGCTGATTGGCTGACAAGATTTTCTATGTCCCCTTAGCTA
CAAGTACTCTACTACTCAGCAGCTCAGCATTCACATCACCTCGGGTTAAA
CTACACGTACGTACGAACACCACATCACAAGCAAAACCACACTTACTTAC
GTACAGTATTGATACGGAAACCACCTATTCTACGACGTAGTCCACATACC
TCTCCCACCACGCTTGACAACTCTCTAATTCCATCAACAAAGTATGAGTT
GGACTAGTCCATGTTGCTTCGTTTCGTTGCCTCTGTATTCCTTGCAGCTA
CATGAGCTGCACTTGGATAATATCGATACATACTGTACTGTACCTTTTTA
TTGTCGCTCGGGTCTTTCGAGGCGCGTGCCCTACATTTGTTTTCGGTGCC
AAATTTTGCGTTGCGACAACTTGTCTTGTGTTGAAGTTGATGTAACACCT
TTCCGCCCACCGTGTCTTCGGTGTCAATCTTGCGTTGTGACAACTTGTCT
TGTGTTGAACATGATGTAACACCTTTCTACCAACTTGTCTCTGCCTGCCT
GATGTTGTAGGCAGAAGCTGCGAGGGCGGCGGCAGAGGCTTCTGTCGCGT
CTACCGCGAACGCTTCGTCG
back to top

Coding sequence (CDS) from alignment at D-herbacea_M_contig94:938719..944988+

>mRNA_D-herbacea_M_contig94.15973.1 ID=mRNA_D-herbacea_M_contig94.15973.1|Name=mRNA_D-herbacea_M_contig94.15973.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=2670bp|location=Sequence derived from alignment at D-herbacea_M_contig94:938719..944988+ (Desmarestia herbacea DmunM male)
ATGCCACGACGGCACCAAGGTTTACCGGGGTGCATCCTCCTAGTAGCAGC
AGCGGTAACAGTATGGAGTTCGCCGCCACGCGTAGCCACGGGCAGTAGCA
ACAGCAACGTCCAAGCATCGTGCGGTGCGATGCCCGTCTGCGTTGCAGCA
GCTTCTACCACAGCAGTATCACCTTCTTCCCAGGCAAGACGGGGAGCGTG
GGGTGCGGCACCTAGGTCTTGGGTGTCTCGTCGACGACGTGAAGGTGTGG
ACGTCCGCCGGTCTCGAGCGAGTAGCAGTAGTACCGGTACCGCCTGTGGA
GCAGCAGACGGCGCGTGTGATGCGAGTTTCGCTCCGTTGTGGATACGAGC
ACGAGGGGGCGCGGGCACTCGGGTTGACGGGCGTCCCTTGAGCGCTGAAG
GGGAAGACAAGGAAGAGGAAGAGGAAGAACAGGATGCTTCCAGTGTACGG
GACGGCGTTGACACTGTTGGCGATATCGTGGACGATACCAGCAGCGAGGA
TCATCAATCTGAGTCGCTCGACGCAGAGAGCGGCGCGACACAGGCCGACG
GACAAGACGCAGCCGACCAAGGAGAAGGAACGAGCCCTGTCGGGACGCCG
ACAGGGGGGCAGGAATTGGACTTTAAGAAGGTGGTGCCGGCGTTGATCAA
GCAAGGCGCGGTGTTTTTCATGGGGACTTGGCTGGCGAAGAAGCTCAGCC
CGGCTGTGGAGGGCCAAGTGCGGACGGCGCGCGTGATTTACACGGGGTAC
CTCATCTTTTCGCAGGCACTCTGCATGTACCTCAGATGCCACGACGGCAC
CAAGGTTTACCGGGGTGCATCCTCCTAGTAGCAGCAGCGGTAACAGTATG
GAGTTCGCCGCCACGCGTAGCCACGGGCAGTAGCAACAGCAACGTCCAAG
CATCGTGCGGTGCGATGCCCGTCTGCGTTGCAGCAGCTTCTACCACAGCA
GTATCACCTTCTTCCCAGGCAAGACGGGGAGCGTGGGGTGCGGCACCTAG
GTCTTGGGTGTCTCGTCGACGACGTGAAGGTGTGGACGTCCGCCGGTCTC
GAGCGAGTAGCAGTAGTACCGGTACCGCCTGTGGAGCAGCAGACGGCGCG
TGTGATGCGAGTTTCGCTCCGTTGTGGATACGAGCACGAGGGGGCGCGGG
CACTCGGGTTGACGGGCGTCCCTTGAGCGCTGAAGGGGAAGACAAGGAAG
AGGAAGAGGAAGAACAGGATGCTTCCAGTGTACGGGACGGCGTTGACACT
GTTGGCGATATCGTGGACGATACCAGCAGCGAGGATCATCAATCTGAGTC
GCTCGACGCAGAGAGCGGCGCGACACAGGCCGACGGACAAGACGCAGCCG
ACCAAGGAGAAGGAACGAGCCCTGTCGGGACGCCGACAGGGGGGCAGGAA
TTGGACTTTAAGAAGGTGGTGCCGGCGTTGATCAAGCAAGGCGCGGTGTT
TTTCATGGGGACTTGGCTGGCGAAGAAGCTCAGCCCGGCTGTGGAGGGCC
AAGTGCGGACGGCGCGCGTGATTTACACGGGGTACCTCATCTTTTCGCAG
GCACTCTGCATGTACCTCAGATATCTGATATGGCTGAAGGATGACGATAC
CGAGATGGAAGTACCACCCCCGGCGCAGCTGAAAAAAATGATGGAGGGAG
TCGGAGGCGCGGGGGCGGGAGCGGGCGACGTAACTGGCGCCGCGACGGCT
GGGGGGGCGACAGCGGCGACGGCGGATGGAGCTGGTGGTGGCGCTTCCAT
GCTGATATCTGATATGGCTGAAGGATGACGATACCGAGATGGAAGTACCA
CCCCCGGCGCAGCTGAAAAAAATGATGGAGGGAGTCGGAGGCGCGGGGGC
GGGAGCGGGCGACGTAACTGGCGCCGCGACGGCTGGGGGGGCGACAGCGG
CGACGGCGGATGGAGCTGGTGGTGGCGCTTCCATGCTGGGACCAATGTTG
GACAAGATTTTGACCTCGAAGACCCCTGTGAAGAAGTACGACATGAACAC
GGTGCAGAGCTTGCGCCGTTCGCAGTTCTGGGCATCCTTGTTCATGTGCT
ACACACACCTCCGGAAGGGCATGATCAAGCCTATGATGTTGCAGGGACCA
ATGTTGGACAAGATTTTGACCTCGAAGACCCCTGTGAAGAAGTACGACAT
GAACACGGTGCAGAGCTTGCGCCGTTCGCAGTTCTGGGCATCCTTGTTCA
TGTGCTACACACACCTCCGGAAGGGCATGATCAAGCCTATGATGTTGCAG
GTATCTTTCGGGATCTTGTCGCTTTTCGACCACCCGCTTTTCAAGATCTA
CGTGCTGGGGCAGGCGGCCGAGGGTGACCTGGCCCGGCCATTCAAGAAGC
AGGGGCTGATGAGCACCCTCCAAGGACCGATGGAAGGCATGGCGACCAAG
GTATCTTTCGGGATCTTGTCGCTTTTCGACCACCCGCTTTTCAAGATCTA
CGTGCTGGGGCAGGCGGCCGAGGGTGACCTGGCCCGGCCATTCAAGAAGC
AGGGGCTGATGAGCACCCTCCAAGGACCGATGGAAGGCATGGCGACCAAG
GCAGAAGCTGCGAGGGCGGCGGCAGAGGCTTCTGTCGCGTCTACCGCGAA
CGCTTCGTCGGCAGAAGCTGCGAGGGCGGCGGCAGAGGCTTCTGTCGCGT
CTACCGCGAACGCTTCGTCG
back to top