mRNA_D-herbacea_M_contig94.15961.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15961.1
Unique NamemRNA_D-herbacea_M_contig94.15961.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig94.15961.1 vs. uniprot
Match: A0A6H5JP06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP06_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.330e-10
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  636 WDRYLAGGAAGMLRAVVHE----TGNRVKIYWKDGHESEFTFKWLRDHCPGSFNPYTRQREL 809
            W R++ GG  G+  AVV +     G RV + W DGH+SEF+ KWLRDH   +FN +T+QR++
Sbjct:   38 WRRFVEGGRHGISAAVVVQPGGGVGQRVSVSWVDGHKSEFSTKWLRDHAADAFNSHTKQRQV 99
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BLAST of mRNA_D-herbacea_M_contig94.15961.1 vs. uniprot
Match: D7FLG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.390e-10
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:  636 WDRYLAGGAAGMLRAVVHE----TGNRVKIYWKDGHESEFTFKWLRDHCPGSFNPYTRQRELDTHAI 824
            W R++ GG  G+  AVV +     G RV + W DGH+SEF+ KWLRDH   +FN +T+QR+   HA+
Sbjct:   38 WRRFVEGGRHGISAAVVVQPGGGVGQRVGVSWADGHKSEFSTKWLRDHAADAFNSHTKQRQF-RHAL 103
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BLAST of mRNA_D-herbacea_M_contig94.15961.1 vs. uniprot
Match: A0A8H7Q0B5_9FUNG (Trimethyllysine dioxygenase n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q0B5_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 3.070e-5
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 3 
Query:  696 GNRVKIYWKDGHESEFTFKWLRDHC--PGSFNPYTRQRELDTHAIPDDIRVQNVSISALSTDSHPQQQQLLELHWSADTSSGTQADEYRKAIPGPWLRRH 989
            GN+V++ W    ES +   WLRDHC  P  ++P TRQR +DT AIP DI+ ++V  +          +  L + W  D        E++      WL+ H
Sbjct:   72 GNQVQVQWDANTESLYQHFWLRDHCRCPSCYHPQTRQRLVDTFAIPVDIKPRSVQAN----------EDGLTVVWDND--------EHKSVYEWAWLKNH 153
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BLAST of mRNA_D-herbacea_M_contig94.15961.1 vs. uniprot
Match: A0A1E3PJJ0_9ASCO (Trimethyllysine dioxygenase n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PJJ0_9ASCO)

HSP 1 Score: 55.5 bits (132), Expect = 6.910e-5
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 3 
Query:  699 NRVKIYWKDGHESEFTFKWLRD--HCPGSFNPYTRQRELDTHAIPDDIRVQNVSISALST-----DSHPQQQQLLELHWSADTSSGTQADEYRKA 962
            N+V I W DG  S +   WLRD   CP  ++P T+QR L+T AIP DI+ +NV+ +  S      D H  Q     + W    S   Q D+ + A
Sbjct:    9 NKVYITWPDGVTSAYDNIWLRDTCQCPEDYHPLTKQRLLNTFAIPRDIQAKNVTFNDQSVLIVWPDDHESQ---FTVSWLRQHSYAPQLDQVKPA 100
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JP06_9PHAE2.330e-1046.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLG6_ECTSI2.390e-1046.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8H7Q0B5_9FUNG3.070e-533.00Trimethyllysine dioxygenase n=1 Tax=Umbelopsis vin... [more]
A0A1E3PJJ0_9ASCO6.910e-536.84Trimethyllysine dioxygenase n=1 Tax=Nadsonia fulve... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:685187..687308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue7.6e-08
Seed eggNOG ortholog36914.XP_001525101.1
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Protein of unknown function (DUF971)
EggNOG OGs38CFT@33154,3NX3Q@4751,3QMZ5@4890,3RU0Y@4891,47A42@766764,COG2175@1,KOG3889@2759
EC1.14.11.8
COG Functional cat.I
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size1028
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15961.1prot_D-herbacea_M_contig94.15961.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 685187..686898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935765.0124025-CDS-D-herbacea_M_contig94:685186..6854081622935765.0124025-CDS-D-herbacea_M_contig94:685186..685408Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 685187..685408 -
1690880694.2803571-CDS-D-herbacea_M_contig94:685186..6854081690880694.2803571-CDS-D-herbacea_M_contig94:685186..685408Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 685187..685408 -
1622935765.0280616-CDS-D-herbacea_M_contig94:686502..6868981622935765.0280616-CDS-D-herbacea_M_contig94:686502..686898Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 686503..686898 -
1690880694.294371-CDS-D-herbacea_M_contig94:686502..6868981690880694.294371-CDS-D-herbacea_M_contig94:686502..686898Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 686503..686898 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935765.0578852-UTR-D-herbacea_M_contig94:686898..6873081622935765.0578852-UTR-D-herbacea_M_contig94:686898..687308Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 686899..687308 -
1690880694.3054743-UTR-D-herbacea_M_contig94:686898..6873081690880694.3054743-UTR-D-herbacea_M_contig94:686898..687308Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 686899..687308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15961.1

>prot_D-herbacea_M_contig94.15961.1 ID=prot_D-herbacea_M_contig94.15961.1|Name=mRNA_D-herbacea_M_contig94.15961.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=206bp
MSHFVTAVARCAARYLGNGKASSHRHATLLTRARPCSSAAGATPWQDSDT
PTRSGEYKNNTVKYNCSSSSSSPVEWDRYLAGGAAGMLRAVVHETGNRVK
IYWKDGHESEFTFKWLRDHCPGSFNPYTRQRELDTHAIPDDIRVQNVSIS
ALSTDSHPQQQQLLELHWSADTSSGTQADEYRKAIPGPWLRRHCTSAKAR
DLRKRY
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mRNA from alignment at D-herbacea_M_contig94:685187..687308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15961.1 ID=mRNA_D-herbacea_M_contig94.15961.1|Name=mRNA_D-herbacea_M_contig94.15961.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=2122bp|location=Sequence derived from alignment at D-herbacea_M_contig94:685187..687308- (Desmarestia herbacea DmunM male)
GTGCAGACAGCTGTGTGATGAACCCTTGATGTGCCGGTCGTGTTTACGAG
TATACCGAGGGCAAGTTGACGTTTGAGACCGTCATCTCATTTTGCCTCTA
ACTCCCGTGTATTTCCGCCACGCTGTGCACTTCATACGCGTTGTGCAACG
AGACGTGTACAGGTGACATTCCATTTTGTTCTTGCGCACCTTTGCTCTAT
AGTTACGAGTATATAGCCCATACCCAGGTCTCCTCGAGTACGACCACGAG
TAGTCCATACCACGCTCCACGCTGGTCCATACCAGCACAACAGCAGTAGT
TGCACTGGTGTATGTACTGCTTGTAGTAGTATCATACGACGTACGAGTGT
ACGAGTACTGCAGCCGATTTTTATTATCTTTGTGTTGCACCGTTGTTGCA
ACTCAGCGTGATGTCGCATTTTGTCACGGCTGTAGCACGGTGCGCAGCGC
GATACCTGGGGAATGGCAAAGCATCGAGTCATCGGCACGCCACGCTATTG
ACGCGGGCCCGGCCTTGCAGCTCAGCTGCCGGTGCCACGCCATGGCAAGA
TAGCGACACGCCAACGAGATCCGGGGAATACAAGAATAACACCGTTAAGT
ACAACTGTTCCAGTAGTAGTAGTAGTCCCGTCGAGTGGGACAGGTACCTC
GCCGGCGGCGCAGCGGGAATGTTGCGGGCCGTGGTCCACGAGACCGGTAA
TAGAGTGAAGATATATTGGAAGGATGGCCACGAGAGCGAGTTTACTTTCA
AGTGGCTTCGAGACCACTGCCCGGGTTCGTTCAACCCCTACACCAGACAG
CGTGAGGTAAGATACAACAGTACAGTCGTAGTCAGTACCTATGCTGCAAT
CAAATAGTCACCGTTATTCGTAAAGGCGGTTTTATCCGAGCGAGCGTCCT
GTCATGCGGACTACTCGTGCGGGTATAAAAGTGAGTAGTCCCCCATTCCC
CGTTTCCTGATTCCTGTTCCAAATACCTACGAGTAGGGGCGTCCGATGTT
GCTGTTACTGTTTTTCGTGAATCATGGAGAGGACGGAGGAGCGACTGTTG
CTGCGTGCAGCACTCCTAGCATCGGTGTTCCTGTACGCTGCTCTGTTTCC
TCGTCGTGCTTTATCTTCTAGTAGATGGTGTATCAAGTACCATTTTTCTC
CGCCGTACTATACTACTACTGTTGTACTGGTTCGCTCTGCGTTGCTGTAT
CTTACATCTTCGGTTGATGTCTACGTGGTACTACTGTCTGCTGTACAGAT
ACTGTCCTGTTCCTATGACCATATGCGTGGCGTACAGCCAGTATTAGGGC
GCAACGCTTTTGGAGGATATACGATCCGACATGTATATGTACAGTCCGTA
GCATGCAAGTAATACATCCCAGTTTAAGACCCTGCCGTCAGCGAAAACAA
CCTTCCTTCGTAGCCACATTAGTCTTTCTGTTATGTTAATTTTATTTGCA
ATACATCAGCGTGATGTTCCAAACCAAAACTGGTTCCGGAGCCCGGGGCT
AACCGCCAACTTGTCTAAACACATGCATACACGTATTACGTCGTATATAC
GCATATACAACGTACTACAACAGCAGTATTCGGTTGAGCCGACACTTTCA
CTGTTGGGATGCGTCGGTCGCGCGTATCGTCTATCGGTCCTCACATAAGA
TATATCGCCATACGATTGCGAGAAGCTCCCCTGAGTTTTCCCAGGCTCCA
CGGGATAATGATGAGAGAGTAATTGTAGTTTGAGCCGTACTATCATGTAA
GGTTTATCTCCACGCCGCACCGCCCAAGGCGTATGGCTCCGTGCCGGCAT
TGCTGACGAGGTCAACGGTCGCCGTCTCTGTGGTATGCGTGACATACCCC
ACCACCCCGCGTCTTGTCGGACGGCCGCCGCTTGCTTCTTTTTTTTGCAG
TTGGACACCCATGCCATACCAGACGACATACGCGTGCAAAACGTCTCCAT
TTCCGCGTTGTCAACGGATTCCCATCCGCAACAGCAGCAACTCCTTGAGC
TTCACTGGAGCGCCGACACGTCTAGTGGTACCCAAGCCGACGAGTACCGG
AAAGCGATCCCCGGCCCGTGGCTTCGGCGGCACTGCACCTCGGCAAAGGC
GCGCGATCTCCGCAAGCGCTAC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:685187..687308-

>mRNA_D-herbacea_M_contig94.15961.1 ID=mRNA_D-herbacea_M_contig94.15961.1|Name=mRNA_D-herbacea_M_contig94.15961.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1236bp|location=Sequence derived from alignment at D-herbacea_M_contig94:685187..687308- (Desmarestia herbacea DmunM male)
ATGTCGCATTTTGTCACGGCTGTAGCACGGTGCGCAGCGCGATACCTGGG
GAATGGCAAAGCATCGAGTCATCGGCACGCCACGCTATTGACGCGGGCCC
GGCCTTGCAGCTCAGCTGCCGGTGCCACGCCATGGCAAGATAGCGACACG
CCAACGAGATCCGGGGAATACAAGAATAACACCGTTAAGTACAACTGTTC
CAGTAGTAGTAGTAGTCCCGTCGAGTGGGACAGGTACCTCGCCGGCGGCG
CAGCGGGAATGTTGCGGGCCGTGGTCCACGAGACCGGTAATAGAGTGAAG
ATATATTGGAAGGATGGCCACGAGAGCGAGTTTACTTTCAAGTGGCTTCG
AGACCACTGCCCGGGTTCGTTCAACCCCTACACCAGACAGCGTGAGATGT
CGCATTTTGTCACGGCTGTAGCACGGTGCGCAGCGCGATACCTGGGGAAT
GGCAAAGCATCGAGTCATCGGCACGCCACGCTATTGACGCGGGCCCGGCC
TTGCAGCTCAGCTGCCGGTGCCACGCCATGGCAAGATAGCGACACGCCAA
CGAGATCCGGGGAATACAAGAATAACACCGTTAAGTACAACTGTTCCAGT
AGTAGTAGTAGTCCCGTCGAGTGGGACAGGTACCTCGCCGGCGGCGCAGC
GGGAATGTTGCGGGCCGTGGTCCACGAGACCGGTAATAGAGTGAAGATAT
ATTGGAAGGATGGCCACGAGAGCGAGTTTACTTTCAAGTGGCTTCGAGAC
CACTGCCCGGGTTCGTTCAACCCCTACACCAGACAGCGTGAGTTGGACAC
CCATGCCATACCAGACGACATACGCGTGCAAAACGTCTCCATTTCCGCGT
TGTCAACGGATTCCCATCCGCAACAGCAGCAACTCCTTGAGCTTCACTGG
AGCGCCGACACGTCTAGTGGTACCCAAGCCGACGAGTACCGGAAAGCGAT
CCCCGGCCCGTGGCTTCGGCGGCACTGCACCTCGGCAAAGGCGCGCGATC
TCCGCAAGCGCTACTTGGACACCCATGCCATACCAGACGACATACGCGTG
CAAAACGTCTCCATTTCCGCGTTGTCAACGGATTCCCATCCGCAACAGCA
GCAACTCCTTGAGCTTCACTGGAGCGCCGACACGTCTAGTGGTACCCAAG
CCGACGAGTACCGGAAAGCGATCCCCGGCCCGTGGCTTCGGCGGCACTGC
ACCTCGGCAAAGGCGCGCGATCTCCGCAAGCGCTAC
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