mRNA_D-herbacea_M_contig94.15936.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15936.1
Unique NamemRNA_D-herbacea_M_contig94.15936.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:237911..238277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.3569872-UTR-D-herbacea_M_contig94:237910..2379381622935756.3569872-UTR-D-herbacea_M_contig94:237910..237938Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 237911..237938 +
1690880690.7892363-UTR-D-herbacea_M_contig94:237910..2379381690880690.7892363-UTR-D-herbacea_M_contig94:237910..237938Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 237911..237938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.3714204-CDS-D-herbacea_M_contig94:237938..2382771622935756.3714204-CDS-D-herbacea_M_contig94:237938..238277Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 237939..238277 +
1690880690.804345-CDS-D-herbacea_M_contig94:237938..2382771690880690.804345-CDS-D-herbacea_M_contig94:237938..238277Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 237939..238277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15936.1prot_D-herbacea_M_contig94.15936.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 237939..238277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15936.1

>prot_D-herbacea_M_contig94.15936.1 ID=prot_D-herbacea_M_contig94.15936.1|Name=mRNA_D-herbacea_M_contig94.15936.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=113bp
MAKTRRWCSFSSEMCEAHHAGWPNQKNVTQPRIYVCTAGLGNVEACDGNA
LGINLQPMGILLDSCERHRREVWAPLDRRKTETNASHLRPVFRSGWISNE
TKPGAAADTTVE*
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mRNA from alignment at D-herbacea_M_contig94:237911..238277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15936.1 ID=mRNA_D-herbacea_M_contig94.15936.1|Name=mRNA_D-herbacea_M_contig94.15936.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=367bp|location=Sequence derived from alignment at D-herbacea_M_contig94:237911..238277+ (Desmarestia herbacea DmunM male)
CTTGCAACAACGGAACAGGAAAGACAAAATGGCAAAAACAAGGCGTTGGT
GCTCATTCAGCTCGGAGATGTGTGAGGCGCATCACGCGGGTTGGCCAAAC
CAAAAGAATGTTACGCAGCCCCGAATATATGTATGTACTGCTGGGCTGGG
GAATGTCGAGGCTTGTGACGGGAATGCACTTGGTATAAACCTACAACCGA
TGGGGATTCTACTTGATTCGTGCGAACGCCATCGCAGAGAGGTCTGGGCA
CCGCTCGACCGAAGAAAAACAGAAACAAACGCAAGCCATCTACGACCCGT
GTTTCGGTCAGGCTGGATATCAAACGAAACAAAACCAGGGGCTGCTGCGG
ACACTACTGTAGAGTAA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:237911..238277+

>mRNA_D-herbacea_M_contig94.15936.1 ID=mRNA_D-herbacea_M_contig94.15936.1|Name=mRNA_D-herbacea_M_contig94.15936.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=678bp|location=Sequence derived from alignment at D-herbacea_M_contig94:237911..238277+ (Desmarestia herbacea DmunM male)
ATGGCAAAAACAAGGCGTTGGTGCTCATTCAGCTCGGAGATGTGTGAGGC
GCATCACGCGGGTTGGCCAAACCAAAAGAATGTTACGCAGCCCCGAATAT
ATGTATGTACTGCTGGGCTGGGGAATGTCGAGGCTTGTGACGGGAATGCA
CTTGGTATAAACCTACAACCGATGGGGATTCTACTTGATTCGTGCGAACG
CCATCGCAGAGAGGTCTGGGCACCGCTCGACCGAAGAAAAACAGAAACAA
ACGCAAGCCATCTACGACCCGTGTTTCGGTCAGGCTGGATATCAAACGAA
ACAAAACCAGGGGCTGCTGCGGACACTACTGTAGAGTAAATGGCAAAAAC
AAGGCGTTGGTGCTCATTCAGCTCGGAGATGTGTGAGGCGCATCACGCGG
GTTGGCCAAACCAAAAGAATGTTACGCAGCCCCGAATATATGTATGTACT
GCTGGGCTGGGGAATGTCGAGGCTTGTGACGGGAATGCACTTGGTATAAA
CCTACAACCGATGGGGATTCTACTTGATTCGTGCGAACGCCATCGCAGAG
AGGTCTGGGCACCGCTCGACCGAAGAAAAACAGAAACAAACGCAAGCCAT
CTACGACCCGTGTTTCGGTCAGGCTGGATATCAAACGAAACAAAACCAGG
GGCTGCTGCGGACACTACTGTAGAGTAA
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