mRNA_D-herbacea_M_contig937.15930.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig937.15930.1
Unique NamemRNA_D-herbacea_M_contig937.15930.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig937.15930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig937contigD-herbacea_M_contig937:29833..31594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size848
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig937.15930.1prot_D-herbacea_M_contig937.15930.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig937 29872..30426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935755.1316235-UTR-D-herbacea_M_contig937:29832..298711622935755.1316235-UTR-D-herbacea_M_contig937:29832..29871Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 29833..29871 +
1690880690.1906374-UTR-D-herbacea_M_contig937:29832..298711690880690.1906374-UTR-D-herbacea_M_contig937:29832..29871Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 29833..29871 +
1622935755.1672246-UTR-D-herbacea_M_contig937:30426..304561622935755.1672246-UTR-D-herbacea_M_contig937:30426..30456Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 30427..30456 +
1690880690.214606-UTR-D-herbacea_M_contig937:30426..304561690880690.214606-UTR-D-herbacea_M_contig937:30426..30456Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 30427..30456 +
1622935755.191167-UTR-D-herbacea_M_contig937:31370..315941622935755.191167-UTR-D-herbacea_M_contig937:31370..31594Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 31371..31594 +
1690880690.2285051-UTR-D-herbacea_M_contig937:31370..315941690880690.2285051-UTR-D-herbacea_M_contig937:31370..31594Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 31371..31594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935755.151849-CDS-D-herbacea_M_contig937:29871..304261622935755.151849-CDS-D-herbacea_M_contig937:29871..30426Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig937 29872..30426 +
1690880690.2026427-CDS-D-herbacea_M_contig937:29871..304261690880690.2026427-CDS-D-herbacea_M_contig937:29871..30426Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig937 29872..30426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig937.15930.1

>prot_D-herbacea_M_contig937.15930.1 ID=prot_D-herbacea_M_contig937.15930.1|Name=mRNA_D-herbacea_M_contig937.15930.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=185bp
MVGIRAKEGTHRDCRKSLLCGVEGSEKLEFCVHCAEAGMSRLDGGASASV
SWIGVERCHSPTSNGTVNRVDTSGCKGEDRVKPVVMKMYYPGKSNKGTSR
KRARRNDNPIAIDSVQGAYARTRRVGPIFSAGLGLMATPDVVIPVFEVHG
SATKNTESGVEAVPLRGAIDPLFSPASGVTVKVE*
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mRNA from alignment at D-herbacea_M_contig937:29833..31594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig937.15930.1 ID=mRNA_D-herbacea_M_contig937.15930.1|Name=mRNA_D-herbacea_M_contig937.15930.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1762bp|location=Sequence derived from alignment at D-herbacea_M_contig937:29833..31594+ (Desmarestia herbacea DmunM male)
AGCAAGTCAGAGTGCCCCGAACAGCGTGCCCCCCAAGGGATGGTCGGCAT
TCGCGCCAAAGAAGGTACCCACCGGGATTGCCGCAAGTCGCTGTTGTGTG
GCGTGGAAGGAAGCGAGAAACTGGAGTTTTGCGTCCACTGTGCTGAGGCG
GGCATGTCACGCTTGGACGGTGGAGCATCGGCCAGTGTTAGCTGGATCGG
GGTTGAACGTTGTCATAGCCCTACATCAAACGGCACAGTGAATCGCGTCG
ATACGTCGGGTTGCAAAGGGGAGGACCGCGTAAAACCTGTTGTCATGAAG
ATGTACTATCCTGGCAAAAGTAACAAGGGAACTTCCAGAAAACGAGCGCG
CCGGAACGACAATCCTATAGCTATAGACTCAGTTCAAGGAGCCTACGCCA
GGACACGTAGAGTAGGGCCAATCTTCTCTGCTGGGCTAGGCCTGATGGCG
ACACCAGATGTGGTCATCCCCGTGTTTGAGGTTCATGGTTCGGCAACGAA
AAACACTGAGAGCGGGGTAGAAGCGGTGCCCTTAAGAGGAGCCATCGATC
CGCTGTTCTCCCCGGCATCAGGGGTGACGGTTAAGGTGGAATAAACCTGA
TGACACGTTAGCCAAACGCCTCAGGTACGTCAAGATCATCAGGGTTTTGT
TTATGTACGTTTTATATCTTGCGCATCGTGAAACTAGGCACATTGGGATA
GGGCATGAATAGTTCACTCAGTTGTTTTTGCTTGGTTCCTTGCTCGATAT
ATATACTACGTATTGCTGCATCTACTCACATTATTATGATAGAGACTGGA
GAGGGCTGCTTACTTAGGGAGCAGTCGTACTCCCTGTTCACTTGATTGAA
GAATCCTACCAGTTGTGTTCATTCCTGGTGTGCTTCATGGCGGCGAACAC
ACTGATGCGGTCCTTCCTGAAAACGTTGCTCTGTGCACGATGTTAGGGTA
CAACGGAATAGAGGGGATGTTGAGCGACCGACTGTGGTTCGTTGATTTCT
CCGTGAATTAGGTTATTCTGTTTTTCGAGATATATTGAGTTGTAACAGCG
AGCGAGCGAGCGGTATGCTCATGACCTTCCGCACCGCACGAAATCTGAAA
CAGAACTGGAATGTTTAATGGTCCTGCACACCTCAAGTTACTAAACGTCA
TTTTTATTAAACTTACAAAAACATCAGCCGTGACGTTCCAAACTGGTTCG
GGGCCAGGGGATAATCGTCAACCTCACTGTGTGATACATCGTTCGCGCGG
ATTTTATCGGTCCTCAGATAAGTTATATTTTAGCATCTTGTTGCTGTGTC
TCTCCATGTTTTAACGACCGCTCGACCTACATCTACACTCTGACGAGGAC
ATTTTCGAGCTGATATCGACTGTTGTGTTTAATTCGGGGCGGCGACGTTA
CACGTTGTCCCGCCCTCACCCCTTCGTCGCAATTTTCCATTCTGCCTTGT
GGATGGATCCCGCGCCGATCCTTGCTTCACCTCAATACCTATTTCCGTCC
CGCGCGTGATGTGTTTTTTTATTGACCACTGCCTGCAGTCACGTGATATT
GGTAAGGGCAGCAGTGTTCCTGGGCTGTGTCCGCCTAATGAGGACGAAGA
TTTCTCTTCTACGCGTGCCACGTGCCGGGATGTTTCGAAACAGGGTAATA
CACAATGGTAATGAGTGTAGACAGCCGTTCAATAGTAGAGAGCGAATATG
TCTAGGAGGTGCAACCAGCAGTGTCCAAGAAGCCAACAATAGAAGTCAAC
AAGACAGTCCCG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig937:29833..31594+

>mRNA_D-herbacea_M_contig937.15930.1 ID=mRNA_D-herbacea_M_contig937.15930.1|Name=mRNA_D-herbacea_M_contig937.15930.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1110bp|location=Sequence derived from alignment at D-herbacea_M_contig937:29833..31594+ (Desmarestia herbacea DmunM male)
ATGGTCGGCATTCGCGCCAAAGAAGGTACCCACCGGGATTGCCGCAAGTC
GCTGTTGTGTGGCGTGGAAGGAAGCGAGAAACTGGAGTTTTGCGTCCACT
GTGCTGAGGCGGGCATGTCACGCTTGGACGGTGGAGCATCGGCCAGTGTT
AGCTGGATCGGGGTTGAACGTTGTCATAGCCCTACATCAAACGGCACAGT
GAATCGCGTCGATACGTCGGGTTGCAAAGGGGAGGACCGCGTAAAACCTG
TTGTCATGAAGATGTACTATCCTGGCAAAAGTAACAAGGGAACTTCCAGA
AAACGAGCGCGCCGGAACGACAATCCTATAGCTATAGACTCAGTTCAAGG
AGCCTACGCCAGGACACGTAGAGTAGGGCCAATCTTCTCTGCTGGGCTAG
GCCTGATGGCGACACCAGATGTGGTCATCCCCGTGTTTGAGGTTCATGGT
TCGGCAACGAAAAACACTGAGAGCGGGGTAGAAGCGGTGCCCTTAAGAGG
AGCCATCGATCCGCTGTTCTCCCCGGCATCAGGGGTGACGGTTAAGGTGG
AATAAATGGTCGGCATTCGCGCCAAAGAAGGTACCCACCGGGATTGCCGC
AAGTCGCTGTTGTGTGGCGTGGAAGGAAGCGAGAAACTGGAGTTTTGCGT
CCACTGTGCTGAGGCGGGCATGTCACGCTTGGACGGTGGAGCATCGGCCA
GTGTTAGCTGGATCGGGGTTGAACGTTGTCATAGCCCTACATCAAACGGC
ACAGTGAATCGCGTCGATACGTCGGGTTGCAAAGGGGAGGACCGCGTAAA
ACCTGTTGTCATGAAGATGTACTATCCTGGCAAAAGTAACAAGGGAACTT
CCAGAAAACGAGCGCGCCGGAACGACAATCCTATAGCTATAGACTCAGTT
CAAGGAGCCTACGCCAGGACACGTAGAGTAGGGCCAATCTTCTCTGCTGG
GCTAGGCCTGATGGCGACACCAGATGTGGTCATCCCCGTGTTTGAGGTTC
ATGGTTCGGCAACGAAAAACACTGAGAGCGGGGTAGAAGCGGTGCCCTTA
AGAGGAGCCATCGATCCGCTGTTCTCCCCGGCATCAGGGGTGACGGTTAA
GGTGGAATAA
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