mRNA_D-herbacea_M_contig937.15929.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig937.15929.1
Unique NamemRNA_D-herbacea_M_contig937.15929.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig937.15929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig937contigD-herbacea_M_contig937:23786..25672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size939
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig937.15929.1prot_D-herbacea_M_contig937.15929.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig937 24988..25542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935754.9933043-UTR-D-herbacea_M_contig937:23785..240091622935754.9933043-UTR-D-herbacea_M_contig937:23785..24009Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 23786..24009 -
1690880690.1205554-UTR-D-herbacea_M_contig937:23785..240091690880690.1205554-UTR-D-herbacea_M_contig937:23785..24009Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 23786..24009 -
1622935755.0509312-UTR-D-herbacea_M_contig937:24957..249871622935755.0509312-UTR-D-herbacea_M_contig937:24957..24987Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 24958..24987 -
1690880690.1379108-UTR-D-herbacea_M_contig937:24957..249871690880690.1379108-UTR-D-herbacea_M_contig937:24957..24987Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 24958..24987 -
1622935755.0876782-UTR-D-herbacea_M_contig937:25542..256721622935755.0876782-UTR-D-herbacea_M_contig937:25542..25672Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 25543..25672 -
1690880690.1713722-UTR-D-herbacea_M_contig937:25542..256721690880690.1713722-UTR-D-herbacea_M_contig937:25542..25672Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig937 25543..25672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935755.069337-CDS-D-herbacea_M_contig937:24987..255421622935755.069337-CDS-D-herbacea_M_contig937:24987..25542Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig937 24988..25542 -
1690880690.153149-CDS-D-herbacea_M_contig937:24987..255421690880690.153149-CDS-D-herbacea_M_contig937:24987..25542Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig937 24988..25542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig937.15929.1

>prot_D-herbacea_M_contig937.15929.1 ID=prot_D-herbacea_M_contig937.15929.1|Name=mRNA_D-herbacea_M_contig937.15929.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=185bp
MVGIRAKEGTHRDCCKSLLCGVEGSEKLEFCVQCAEAGMSRLDGGASARV
SWVGVARCRSPTANGTVNRVDASGCKGEDRVKPAAMKTYYSGKSNKGAYR
KRARRNDNPIAVDSVHGAYARTRRVGPIFSAGLGLMATPDVVIPVFEVYG
SAAKDTESGVEAVPSRGAIDPLFSPASGVTVKVE*
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mRNA from alignment at D-herbacea_M_contig937:23786..25672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig937.15929.1 ID=mRNA_D-herbacea_M_contig937.15929.1|Name=mRNA_D-herbacea_M_contig937.15929.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1887bp|location=Sequence derived from alignment at D-herbacea_M_contig937:23786..25672- (Desmarestia herbacea DmunM male)
CAAGCAGGACATGGTCCACCCCAGGTCCATTAAACGTGTTGATCGGGGTG
ACTGTGGCGAGCGCCCGTCACGTGGTGTAGACGACAGCATCAGCAAATGA
GAGTGCCCCGAACAGCGTGCCCCCCAAGGGATGGTCGGCATTCGCGCCAA
AGAAGGTACCCACCGGGATTGCTGCAAGTCGCTGTTGTGTGGCGTGGAAG
GAAGCGAGAAACTGGAGTTTTGCGTCCAATGTGCAGAGGCGGGCATGTCA
CGCTTGGACGGTGGAGCATCGGCCCGAGTTAGCTGGGTCGGGGTTGCACG
TTGTCGTAGCCCTACAGCAAACGGCACAGTCAATCGCGTTGATGCGTCTG
GTTGCAAAGGGGAGGACCGCGTAAAACCTGCTGCCATGAAGACGTACTAT
TCCGGCAAAAGTAACAAGGGAGCTTACAGAAAACGAGCGCGCCGGAACGA
CAATCCTATAGCTGTAGACTCAGTTCACGGAGCCTACGCCAGGACACGTA
GAGTAGGGCCAATCTTCTCTGCTGGGCTAGGCCTGATGGCGACACCAGAT
GTGGTCATCCCCGTTTTTGAGGTTTATGGTTCGGCAGCGAAAGACACTGA
GAGCGGCGTAGAAGCGGTGCCCTCAAGAGGAGCCATCGATCCGCTGTTCT
CCCCGGCATCAGGGGTGACGGTTAAGGTGGAATAAACCTGATGACACGTT
AGCCAAACGCCTCAGGTACGTCTAGATCAGGGTTTTGTTTATGTACTCTT
TATACTTGTATCTTGCGCATCGTGAATCATAGGCACATTTGGGATAGGGC
ATGAATAGTTCACTCAGTTGTTTTTGCTTGGTTCCTTGCTCGCCGTATGT
ACTACGTATTGCTGCATCTACTCGCGTTCGAGCGAAAGCTGTCACATTAT
TATGATACTTCGTAAGAGACTGGAGAGGGTTGCTTACTTAGGGGGCAGTC
GTACTCCCTGTTCACTTGATTGAAGAATCCTACCAGTTGTGTTCATTCCT
GGTGTGCTTCATGGCGGCGAACACACTGATGCGGTCCTTCCTGAAAACGT
TGCTCTGTGCACGATGTTAGGGTACAACGGAACAGAGGGGATGTTGAGCG
ACCGACTGTGGTTCTTTGATTTCTCCGTAAATTAGTTTATTCTGTTTTTC
GAGCTATATTGAATTGTAACAGCGAGCGAGCGAGCGGTATGCTCATGATC
TTCCGCACCACACGAAATCTAAAACAGAACTGCAATGTTTAACCGTCCTG
CACACCTCAAGTTATTAAACGTTATTTTTATTAAACTTACAAAAACATCA
GCCGGGACGTTCCAAACTGGTTCGGGGGCCAGGGGGTAATCGTCAACCTC
ACTGTGTGATACATCGGTCGCGCGGATTCTATCGGTCCTCAGATAAGTTA
TATTTTAGCATCTCGTTGCTGTGTCTCGCCATATTTTAACGACCGCTCGA
CCTACATCTACACTCTGACGGGGACATTTTCGAGCTGATATCGACTGTTA
TGCTTGATTCAGGGCGGCAACGTTACACGTTGTCCCGCCCTCACCCCTTC
GTCGCAATTTTCCATTCTGCCTTGTGGATGGATCCCGCGCCGATCCTTGC
TTCACCTCAATACCTGTTTCCATCCCGCGCGTGATGTGTTTTTTTATTGA
CCACTGCCTGCAGACACGTGATATTGGTAAGGGCAGCAGTGTCCCTGGGC
TGTGTCCTCCTAATGAGGACGAAGATTTCTCTTCTACGCGTGCCACGTGC
CGGGATGTTTCGAAACAGGGTAGTACACAATGGTAATGAGTGTAGACAGC
CGTTATATAATAGAGAGCAAATATGTCCAGGAGGTGCAACCAGCAGTGTC
CAAGAAGCCAACAAGAGAAGTCAACAAGACAGTCCCG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig937:23786..25672-

>mRNA_D-herbacea_M_contig937.15929.1 ID=mRNA_D-herbacea_M_contig937.15929.1|Name=mRNA_D-herbacea_M_contig937.15929.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1110bp|location=Sequence derived from alignment at D-herbacea_M_contig937:23786..25672- (Desmarestia herbacea DmunM male)
ATGGTCGGCATTCGCGCCAAAGAAGGTACCCACCGGGATTGCTGCAAGTC
GCTGTTGTGTGGCGTGGAAGGAAGCGAGAAACTGGAGTTTTGCGTCCAAT
GTGCAGAGGCGGGCATGTCACGCTTGGACGGTGGAGCATCGGCCCGAGTT
AGCTGGGTCGGGGTTGCACGTTGTCGTAGCCCTACAGCAAACGGCACAGT
CAATCGCGTTGATGCGTCTGGTTGCAAAGGGGAGGACCGCGTAAAACCTG
CTGCCATGAAGACGTACTATTCCGGCAAAAGTAACAAGGGAGCTTACAGA
AAACGAGCGCGCCGGAACGACAATCCTATAGCTGTAGACTCAGTTCACGG
AGCCTACGCCAGGACACGTAGAGTAGGGCCAATCTTCTCTGCTGGGCTAG
GCCTGATGGCGACACCAGATGTGGTCATCCCCGTTTTTGAGGTTTATGGT
TCGGCAGCGAAAGACACTGAGAGCGGCGTAGAAGCGGTGCCCTCAAGAGG
AGCCATCGATCCGCTGTTCTCCCCGGCATCAGGGGTGACGGTTAAGGTGG
AATAAATGGTCGGCATTCGCGCCAAAGAAGGTACCCACCGGGATTGCTGC
AAGTCGCTGTTGTGTGGCGTGGAAGGAAGCGAGAAACTGGAGTTTTGCGT
CCAATGTGCAGAGGCGGGCATGTCACGCTTGGACGGTGGAGCATCGGCCC
GAGTTAGCTGGGTCGGGGTTGCACGTTGTCGTAGCCCTACAGCAAACGGC
ACAGTCAATCGCGTTGATGCGTCTGGTTGCAAAGGGGAGGACCGCGTAAA
ACCTGCTGCCATGAAGACGTACTATTCCGGCAAAAGTAACAAGGGAGCTT
ACAGAAAACGAGCGCGCCGGAACGACAATCCTATAGCTGTAGACTCAGTT
CACGGAGCCTACGCCAGGACACGTAGAGTAGGGCCAATCTTCTCTGCTGG
GCTAGGCCTGATGGCGACACCAGATGTGGTCATCCCCGTTTTTGAGGTTT
ATGGTTCGGCAGCGAAAGACACTGAGAGCGGCGTAGAAGCGGTGCCCTCA
AGAGGAGCCATCGATCCGCTGTTCTCCCCGGCATCAGGGGTGACGGTTAA
GGTGGAATAA
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