mRNA_D-herbacea_M_contig931.15925.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig931.15925.1
Unique NamemRNA_D-herbacea_M_contig931.15925.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig931.15925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig931contigD-herbacea_M_contig931:38621..39332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size690
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig931.15925.1prot_D-herbacea_M_contig931.15925.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig931 38936..39332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935754.518257-UTR-D-herbacea_M_contig931:38620..389351622935754.518257-UTR-D-herbacea_M_contig931:38620..38935Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig931 38621..38935 +
1690880689.936253-UTR-D-herbacea_M_contig931:38620..389351690880689.936253-UTR-D-herbacea_M_contig931:38620..38935Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig931 38621..38935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935754.5350251-CDS-D-herbacea_M_contig931:38935..392151622935754.5350251-CDS-D-herbacea_M_contig931:38935..39215Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig931 38936..39215 +
1690880689.9507363-CDS-D-herbacea_M_contig931:38935..392151690880689.9507363-CDS-D-herbacea_M_contig931:38935..39215Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig931 38936..39215 +
1622935754.5514688-CDS-D-herbacea_M_contig931:39237..393321622935754.5514688-CDS-D-herbacea_M_contig931:39237..39332Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig931 39238..39332 +
1690880689.9618785-CDS-D-herbacea_M_contig931:39237..393321690880689.9618785-CDS-D-herbacea_M_contig931:39237..39332Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig931 39238..39332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig931.15925.1

>prot_D-herbacea_M_contig931.15925.1 ID=prot_D-herbacea_M_contig931.15925.1|Name=mRNA_D-herbacea_M_contig931.15925.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=125bp
MRSVVRSSPIFTGLSVGSIADLHSSCRKHDIIFFRHMRYSASAPSNLGTC
TVVALWPPRKYLVPAWTSRPRGCSPMSSAATLLLSLEDAVFSLTPPSTAA
VRPCVLSSSRGVRGADPQWYRVRL*
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mRNA from alignment at D-herbacea_M_contig931:38621..39332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig931.15925.1 ID=mRNA_D-herbacea_M_contig931.15925.1|Name=mRNA_D-herbacea_M_contig931.15925.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=712bp|location=Sequence derived from alignment at D-herbacea_M_contig931:38621..39332+ (Desmarestia herbacea DmunM male)
TTCATGTTTACCTCCCCCTCGGTCTTATGGACACCGAGCGCCTCTAGCAT
ATCGACAATATCGTCGACGCGGCTCAAGTATAGTTGGGGGTCTTCCCCCG
GGTACATGCGGACGCTCTCATACTTTGCAGTCCATTGCTGCAGCATTACG
ACGCCTTTTGGCTTGTACCAATTATCGAGCATTGCCCATGCCTCGCTAGG
CGAACCACACGCATAAATTTTGTTCGTTAGGGCTGGCGAGGTTACCGAGT
CGCATAGAGTAGTCCACGCACGCCTAGCTGCGTCTACGTCGTCAGCGCTG
TGGTTCCGGCGCAACATGCGCTCGGTTGTCCGTTCGTCCCCTATTTTCAC
GGGATTGTCGGTAGGCTCAATCGCTGACCTACACTCGAGCTGTAGGAAAC
ACGACATTATCTTCTTTCGCCACATGCGATACTCTGCCTCAGCACCATCG
AACTTGGGTACATGTACGGTAGTGGCTCTATGGCCACCAAGAAAGTACCT
GGTACCGGCGTGGACGTCTCGTCCTCGTGGATGCTCTCCCATGTCTTCTG
CGGCGACGTTGTTGCTGTCGCTCGAAGATGCTGTCTTCTCCCTCAGTTTT
TCTTGGAGGTCCTTGAGCTCCTCCCTCGACTGCTGCTGTTCGGCCTTGCG
TTCTCTCCTCATCTCGAGGAGTTCGCGGCGCAGATCCTCAATGGTATCGA
GTCCGCCTGTAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig931:38621..39332+

>mRNA_D-herbacea_M_contig931.15925.1 ID=mRNA_D-herbacea_M_contig931.15925.1|Name=mRNA_D-herbacea_M_contig931.15925.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=750bp|location=Sequence derived from alignment at D-herbacea_M_contig931:38621..39332+ (Desmarestia herbacea DmunM male)
ATGCGCTCGGTTGTCCGTTCGTCCCCTATTTTCACGGGATTGTCGGTAGG
CTCAATCGCTGACCTACACTCGAGCTGTAGGAAACACGACATTATCTTCT
TTCGCCACATGCGATACTCTGCCTCAGCACCATCGAACTTGGGTACATGT
ACGGTAGTGGCTCTATGGCCACCAAGAAAGTACCTGGTACCGGCGTGGAC
GTCTCGTCCTCGTGGATGCTCTCCCATGTCTTCTGCGGCGACGTTGTTGC
TGTCGCTCGAAGATGCTGTCTTCTCCCTCAATGCGCTCGGTTGTCCGTTC
GTCCCCTATTTTCACGGGATTGTCGGTAGGCTCAATCGCTGACCTACACT
CGAGCTGTAGGAAACACGACATTATCTTCTTTCGCCACATGCGATACTCT
GCCTCAGCACCATCGAACTTGGGTACATGTACGGTAGTGGCTCTATGGCC
ACCAAGAAAGTACCTGGTACCGGCGTGGACGTCTCGTCCTCGTGGATGCT
CTCCCATGTCTTCTGCGGCGACGTTGTTGCTGTCGCTCGAAGATGCTGTC
TTCTCCCTCACTCCTCCCTCGACTGCTGCTGTTCGGCCTTGCGTTCTCTC
CTCATCTCGAGGAGTTCGCGGCGCAGATCCTCAATGGTATCGAGTCCGCC
TGTAGCTCCTCCCTCGACTGCTGCTGTTCGGCCTTGCGTTCTCTCCTCAT
CTCGAGGAGTTCGCGGCGCAGATCCTCAATGGTATCGAGTCCGCCTGTAG
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