mRNA_D-herbacea_M_contig93.15906.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig93.15906.1
Unique NamemRNA_D-herbacea_M_contig93.15906.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig93.15906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig93contigD-herbacea_M_contig93:648859..649172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935743.9807081-UTR-D-herbacea_M_contig93:648858..6488601622935743.9807081-UTR-D-herbacea_M_contig93:648858..648860Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig93 648859..648860 +
1690880684.6262116-UTR-D-herbacea_M_contig93:648858..6488601690880684.6262116-UTR-D-herbacea_M_contig93:648858..648860Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig93 648859..648860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935743.9989896-CDS-D-herbacea_M_contig93:648860..6491721622935743.9989896-CDS-D-herbacea_M_contig93:648860..649172Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 648861..649172 +
1690880684.637491-CDS-D-herbacea_M_contig93:648860..6491721690880684.637491-CDS-D-herbacea_M_contig93:648860..649172Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 648861..649172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig93.15906.1prot_D-herbacea_M_contig93.15906.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig93 648861..649172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig93.15906.1

>prot_D-herbacea_M_contig93.15906.1 ID=prot_D-herbacea_M_contig93.15906.1|Name=mRNA_D-herbacea_M_contig93.15906.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=104bp
MSFWILKGVSLANSPRTSLPCCCILVAPILVGFLSCHIIVRFCLFWCFLR
VDDKYILAFDLLSCHMVHACQSVYSLFRRYISTKRVLERETTIGRDRRGD
LRR*
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mRNA from alignment at D-herbacea_M_contig93:648859..649172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig93.15906.1 ID=mRNA_D-herbacea_M_contig93.15906.1|Name=mRNA_D-herbacea_M_contig93.15906.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=314bp|location=Sequence derived from alignment at D-herbacea_M_contig93:648859..649172+ (Desmarestia herbacea DmunM male)
GAATGAGTTTTTGGATATTGAAAGGTGTCAGTTTGGCTAACAGTCCCCGT
ACCTCCCTTCCTTGCTGCTGCATACTCGTAGCCCCAATCCTCGTTGGATT
TTTAAGCTGTCACATCATAGTTCGTTTTTGTTTATTTTGGTGTTTTTTGC
GAGTTGATGATAAATATATTTTAGCTTTTGACCTTTTAAGCTGTCATATG
GTCCATGCATGTCAATCTGTCTATTCACTTTTTAGACGATATATTTCGAC
AAAAAGAGTTTTGGAAAGGGAAACAACAATTGGCCGTGACCGCCGAGGCG
ATTTACGTCGATAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig93:648859..649172+

>mRNA_D-herbacea_M_contig93.15906.1 ID=mRNA_D-herbacea_M_contig93.15906.1|Name=mRNA_D-herbacea_M_contig93.15906.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=624bp|location=Sequence derived from alignment at D-herbacea_M_contig93:648859..649172+ (Desmarestia herbacea DmunM male)
ATGAGTTTTTGGATATTGAAAGGTGTCAGTTTGGCTAACAGTCCCCGTAC
CTCCCTTCCTTGCTGCTGCATACTCGTAGCCCCAATCCTCGTTGGATTTT
TAAGCTGTCACATCATAGTTCGTTTTTGTTTATTTTGGTGTTTTTTGCGA
GTTGATGATAAATATATTTTAGCTTTTGACCTTTTAAGCTGTCATATGGT
CCATGCATGTCAATCTGTCTATTCACTTTTTAGACGATATATTTCGACAA
AAAGAGTTTTGGAAAGGGAAACAACAATTGGCCGTGACCGCCGAGGCGAT
TTACGTCGATAGATGAGTTTTTGGATATTGAAAGGTGTCAGTTTGGCTAA
CAGTCCCCGTACCTCCCTTCCTTGCTGCTGCATACTCGTAGCCCCAATCC
TCGTTGGATTTTTAAGCTGTCACATCATAGTTCGTTTTTGTTTATTTTGG
TGTTTTTTGCGAGTTGATGATAAATATATTTTAGCTTTTGACCTTTTAAG
CTGTCATATGGTCCATGCATGTCAATCTGTCTATTCACTTTTTAGACGAT
ATATTTCGACAAAAAGAGTTTTGGAAAGGGAAACAACAATTGGCCGTGAC
CGCCGAGGCGATTTACGTCGATAG
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