mRNA_D-herbacea_M_contig922.15880.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig922.15880.1
Unique NamemRNA_D-herbacea_M_contig922.15880.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.300e-35
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKI 294
            MTVG   DGYWT DRMC QLP  IA+ EL++  HR+GVFIFDNSTG+ AY+DDALL   ISL+PG EK A   FEDDNGK V PTFQVGD LL  KKI
Sbjct:  501 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKI 598
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.530e-35
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG  QDGYWT DRMC QLP  +A  ELT+  HR+GVFIFDNSTG+ AY+DDALL   ISL+PG EK A   FEDDNG+ V PTFQ GD LL  KKI   +   PE+ + K R+
Sbjct:  553 MTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKT--PEQKKIKGRK 665
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 5.470e-33
Identity = 61/98 (62.24%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKI 294
            MTVG   DGYWT DRMC QLP  IA  ELT   HR+GV IFDNSTG+  Y+DDALL   +SL+PG EK A   FEDDNG+ V PT Q+G  LL  KKI
Sbjct:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKI 98
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.420e-32
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKK 336
            M VG   DGYWT D MC QLP IIA+ ELTS  HR+GVFIFDNSTG+  Y+ DALL  NI+L+PG EK+A   FED +GKKV PTFQ+GD LL  +KI   +    ++ +K+
Sbjct:  368 MPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKR 479
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5KH16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH16_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.260e-25
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG  QDGYW C RM  Q+PG+IAI ELTSE HR+ V +FDNSTG+ A+   AL+ ++++L PG  + A   FEDD G  V  TF+VGD L  +  +   +     E EKKA +
Sbjct:  187 MTVGQYQDGYWNCARMLEQIPGLIAIHELTSEPHRQLVMVFDNSTGHSAFGAGALVGEHVALRPGGAQGALRNFEDDEGNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAE 301
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.400e-25
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG N DGYWT DRMC Q+PG+IAI ELTSE HR  V +FDNSTG+ AYE+ AL+  +I   PG  ++    F DD G  V  TF+ GD +L    +   +   PE+ E++ R+
Sbjct:   91 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKT--PEQLEEEERE 203
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.940e-25
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG N DGYWT DRMC Q+PG+IAI ELTSE HR  V +FDNSTG+ AYE+ AL+  +I   PG  ++    F DD G  V  TF+ GD +L    +   +   PE+ E++ R+
Sbjct:  524 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKT--PEQLEEEERE 636
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BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5L669_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L669_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.240e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG +QDGYW C RM  Q+PG+IAI ELTSE HR+ V +FDNSTG+ A+   AL+ ++++L PG  + A   FEDD G  V  TF+VGD L  +  +   +     E EKKA +
Sbjct:  360 MTVGQHQDGYWNCARMLEQIPGLIAIHELTSEPHRQLVMVFDNSTGHSAFGAGALVGEHVALRPGGAQGALRNFEDDEGNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAE 474
[Close]
BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.780e-24
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKI 294
            MTVG N DGYWT DRMC Q+PG+IAI ELTSE HR  V +FDNSTG+ AYE+ AL+  +I   PG  ++    F DD G  V  TF+ GD +L+   +
Sbjct:  978 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLLDTHV 1075
[Close]
BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.260e-24
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAYEDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICFTEDS*PEEGEKKARQ 345
            MTVG N DGYWT DRMC Q+PG+IAI ELTSE HR  V +FDNSTG+ AYE+ AL+  +I   PG  ++    F DD G  V  TF+ GD +L    +   +   PE+ E++ R+
Sbjct:  264 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVI-LDFLDDQGNLVHATFREGDTVLFDTHVYAAKT--PEQLEEEERE 375
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig922.15880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE3.300e-3568.37Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K550_9PHAE4.530e-3560.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FZS5_ECTSI5.470e-3362.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD27_9PHAE1.420e-3257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH16_9PHAE3.260e-2548.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JT56_9PHAE4.400e-2548.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE6.940e-2548.70Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L669_9PHAE1.240e-2448.70Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE1.780e-2453.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE6.260e-2448.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig922contigD-herbacea_M_contig922:37255..37864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue8.3e-27
Seed eggNOG ortholog2880.D7FZS5
Hectar predicted targeting categoryother localisation
EggNOG OGs2D16T@1,2SGXK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size610
Cds size315
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.6421595-UTR-D-herbacea_M_contig922:37254..375491622935742.6421595-UTR-D-herbacea_M_contig922:37254..37549Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig922 37255..37549 -
1690880684.0143292-UTR-D-herbacea_M_contig922:37254..375491690880684.0143292-UTR-D-herbacea_M_contig922:37254..37549Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig922 37255..37549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.655389-CDS-D-herbacea_M_contig922:37549..378641622935742.655389-CDS-D-herbacea_M_contig922:37549..37864Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig922 37550..37864 -
1690880684.0255654-CDS-D-herbacea_M_contig922:37549..378641690880684.0255654-CDS-D-herbacea_M_contig922:37549..37864Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig922 37550..37864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig922.15880.1prot_D-herbacea_M_contig922.15880.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig922 37550..37864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig922.15880.1

>prot_D-herbacea_M_contig922.15880.1 ID=prot_D-herbacea_M_contig922.15880.1|Name=mRNA_D-herbacea_M_contig922.15880.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=105bp
MTVGVNQDGYWTCDRMCTQLPGIIAIIELTSEAHRKGVFIFDNSTGNGAY
EDDALLPQNISLSPGEEKIASAPFEDDNGKKVCPTFQVGDILLVSKKICF
TEDS*
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mRNA from alignment at D-herbacea_M_contig922:37255..37864-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig922.15880.1 ID=mRNA_D-herbacea_M_contig922.15880.1|Name=mRNA_D-herbacea_M_contig922.15880.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=610bp|location=Sequence derived from alignment at D-herbacea_M_contig922:37255..37864- (Desmarestia herbacea DmunM male)
ATGACCGTGGGAGTAAATCAGGATGGATATTGGACCTGCGACCGCATGTG
CACCCAACTGCCGGGGATAATCGCCATCATTGAGTTGACGAGTGAGGCGC
ACCGGAAGGGTGTCTTCATCTTCGACAATTCTACCGGGAACGGTGCTTAC
GAAGACGACGCTTTGCTGCCCCAGAACATCAGCTTGTCGCCGGGGGAGGA
GAAGATCGCGTCCGCCCCGTTCGAGGACGACAACGGAAAGAAGGTGTGCC
CCACGTTCCAAGTTGGTGACATCCTGCTCGTCAGTAAAAAGATTTGTTTT
ACCGAAGACAGCTGACCAGAAGAAGGCGAAAAGAAAGCACGGCAGTGAAC
TCACGTTCAAGCCCCACACTGTAGTCGAGAAGACTGGTGATAGCTCGCGC
CTGATCGGTGTCCCAAAAGGAGCTGAGCAACTGCTGAAGGAGATGGGGCT
GTGGAAACGTGAAAGCGAGACCAAGGCTCCACCTCTTTCTTGCAAAGCGT
GCACGAGCGAGAACAAAGCAGAACGTCAAGCGATCACTGCTTTCAACCGA
GGAGGGGAGGGACGGGAGCAAGCACCCAAGAGAGCGCGGGGTGAGCAGCA
GGACACCACA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig922:37255..37864-

>mRNA_D-herbacea_M_contig922.15880.1 ID=mRNA_D-herbacea_M_contig922.15880.1|Name=mRNA_D-herbacea_M_contig922.15880.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=630bp|location=Sequence derived from alignment at D-herbacea_M_contig922:37255..37864- (Desmarestia herbacea DmunM male)
ATGACCGTGGGAGTAAATCAGGATGGATATTGGACCTGCGACCGCATGTG
CACCCAACTGCCGGGGATAATCGCCATCATTGAGTTGACGAGTGAGGCGC
ACCGGAAGGGTGTCTTCATCTTCGACAATTCTACCGGGAACGGTGCTTAC
GAAGACGACGCTTTGCTGCCCCAGAACATCAGCTTGTCGCCGGGGGAGGA
GAAGATCGCGTCCGCCCCGTTCGAGGACGACAACGGAAAGAAGGTGTGCC
CCACGTTCCAAGTTGGTGACATCCTGCTCGTCAGTAAAAAGATTTGTTTT
ACCGAAGACAGCTGAATGACCGTGGGAGTAAATCAGGATGGATATTGGAC
CTGCGACCGCATGTGCACCCAACTGCCGGGGATAATCGCCATCATTGAGT
TGACGAGTGAGGCGCACCGGAAGGGTGTCTTCATCTTCGACAATTCTACC
GGGAACGGTGCTTACGAAGACGACGCTTTGCTGCCCCAGAACATCAGCTT
GTCGCCGGGGGAGGAGAAGATCGCGTCCGCCCCGTTCGAGGACGACAACG
GAAAGAAGGTGTGCCCCACGTTCCAAGTTGGTGACATCCTGCTCGTCAGT
AAAAAGATTTGTTTTACCGAAGACAGCTGA
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