mRNA_D-herbacea_M_contig921.15879.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig921.15879.1
Unique NamemRNA_D-herbacea_M_contig921.15879.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig921.15879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig921contigD-herbacea_M_contig921:37214..37857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.3915956-CDS-D-herbacea_M_contig921:37213..376241622935742.3915956-CDS-D-herbacea_M_contig921:37213..37624Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig921 37214..37624 +
1690880683.9122868-CDS-D-herbacea_M_contig921:37213..376241690880683.9122868-CDS-D-herbacea_M_contig921:37213..37624Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig921 37214..37624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.466119-UTR-D-herbacea_M_contig921:37624..378571622935742.466119-UTR-D-herbacea_M_contig921:37624..37857Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig921 37625..37857 +
1690880683.9245179-UTR-D-herbacea_M_contig921:37624..378571690880683.9245179-UTR-D-herbacea_M_contig921:37624..37857Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig921 37625..37857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig921.15879.1prot_D-herbacea_M_contig921.15879.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig921 37214..37624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig921.15879.1

>prot_D-herbacea_M_contig921.15879.1 ID=prot_D-herbacea_M_contig921.15879.1|Name=mRNA_D-herbacea_M_contig921.15879.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=137bp
LPPDNRQRLFRLARFCTHRFKGHVLSFDRPRVNGWGEAHIVRQRRKTNIL
RIVVYQVCIVHSFQRGPTNPPLEPYGCEVKKWRLSPPVERLVLVLDDSGN
GVVRWVVVVRCRGVMSFKKKNVLLVRTRSRTVVLFF*
back to top

mRNA from alignment at D-herbacea_M_contig921:37214..37857+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig921.15879.1 ID=mRNA_D-herbacea_M_contig921.15879.1|Name=mRNA_D-herbacea_M_contig921.15879.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=644bp|location=Sequence derived from alignment at D-herbacea_M_contig921:37214..37857+ (Desmarestia herbacea DmunM male)
CTTCCCCCCGACAACAGACAGCGTTTGTTTCGTCTTGCTCGGTTCTGTAC
TCACCGATTCAAAGGTCATGTTTTAAGTTTTGACCGGCCCCGTGTGAATG
GTTGGGGGGAGGCACATATTGTAAGGCAAAGAAGAAAGACAAATATATTG
CGTATTGTAGTGTACCAGGTATGTATAGTCCATAGTTTTCAAAGGGGGCC
AACCAACCCCCCGCTAGAGCCCTATGGTTGTGAAGTTAAAAAGTGGCGTT
TGTCGCCGCCAGTCGAGCGATTGGTGTTGGTGTTGGACGACAGCGGGAAT
GGAGTGGTACGGTGGGTGGTGGTGGTGCGCTGTAGAGGGGTCATGTCTTT
TAAAAAGAAAAATGTGCTACTCGTACGTACAAGATCGAGGACTGTTGTTC
TTTTTTTTTAATTATTTTATTTTTATTTTTTCGGTTATTTGTGAGTTTAG
CTTCTATAGTTGCATACATACGTACAATGCTCGCATGGTAGCCGAGTTTT
TTTTATAGAAGATAGGTGGTGTGACGTTCCATCATCATGGTGATGATTAT
AAGCGGTCATTCAAGGGAAGAATGAATGAATGCTGTGGAGAGTGTGAGAA
ACAAAAATATTCGAACAACAAGCGAAAATTACCGGTCTGAACGC
back to top

Coding sequence (CDS) from alignment at D-herbacea_M_contig921:37214..37857+

>mRNA_D-herbacea_M_contig921.15879.1 ID=mRNA_D-herbacea_M_contig921.15879.1|Name=mRNA_D-herbacea_M_contig921.15879.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=822bp|location=Sequence derived from alignment at D-herbacea_M_contig921:37214..37857+ (Desmarestia herbacea DmunM male)
CTTCCCCCCGACAACAGACAGCGTTTGTTTCGTCTTGCTCGGTTCTGTAC
TCACCGATTCAAAGGTCATGTTTTAAGTTTTGACCGGCCCCGTGTGAATG
GTTGGGGGGAGGCACATATTGTAAGGCAAAGAAGAAAGACAAATATATTG
CGTATTGTAGTGTACCAGGTATGTATAGTCCATAGTTTTCAAAGGGGGCC
AACCAACCCCCCGCTAGAGCCCTATGGTTGTGAAGTTAAAAAGTGGCGTT
TGTCGCCGCCAGTCGAGCGATTGGTGTTGGTGTTGGACGACAGCGGGAAT
GGAGTGGTACGGTGGGTGGTGGTGGTGCGCTGTAGAGGGGTCATGTCTTT
TAAAAAGAAAAATGTGCTACTCGTACGTACAAGATCGAGGACTGTTGTTC
TTTTTTTTTAACTTCCCCCCGACAACAGACAGCGTTTGTTTCGTCTTGCT
CGGTTCTGTACTCACCGATTCAAAGGTCATGTTTTAAGTTTTGACCGGCC
CCGTGTGAATGGTTGGGGGGAGGCACATATTGTAAGGCAAAGAAGAAAGA
CAAATATATTGCGTATTGTAGTGTACCAGGTATGTATAGTCCATAGTTTT
CAAAGGGGGCCAACCAACCCCCCGCTAGAGCCCTATGGTTGTGAAGTTAA
AAAGTGGCGTTTGTCGCCGCCAGTCGAGCGATTGGTGTTGGTGTTGGACG
ACAGCGGGAATGGAGTGGTACGGTGGGTGGTGGTGGTGCGCTGTAGAGGG
GTCATGTCTTTTAAAAAGAAAAATGTGCTACTCGTACGTACAAGATCGAG
GACTGTTGTTCTTTTTTTTTAA
back to top