mRNA_D-herbacea_M_contig92.15853.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig92.15853.1
Unique NamemRNA_D-herbacea_M_contig92.15853.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig92.15853.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.030e-14
Identity = 66/130 (50.77%), Postives = 71/130 (54.62%), Query Frame = -3 
Query:  644 MHAGYGHLGMYGGYPGMMGMSYPFQAHGYPGMPGYGXXXXXXXXXXXXXXXH---IAASMGMSGMAAMQLAAQTMXXXXXXXXXXXX-------------------------------HIDLNQPHEIQN 931
            MH GYG   MYGGYPGMMGM YPFQAHGYPGMPGYG                    ++S GMSGMAAMQLAAQ+M  XXXXXXXXXX                               HIDLNQPHE+Q+
Sbjct:  415 MH-GYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGMSGMAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXHPXXYHDPNHPQHQQHIDLNQPHEVQS 543
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig92.15853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0H9_9PHAE4.030e-1450.77RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig92contigD-herbacea_M_contig92:665413..666360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size948
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig92.15853.1prot_D-herbacea_M_contig92.15853.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig92 665620..666213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935734.2228272-UTR-D-herbacea_M_contig92:665412..6656191622935734.2228272-UTR-D-herbacea_M_contig92:665412..665619Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 665413..665619 +
1690880679.9094653-UTR-D-herbacea_M_contig92:665412..6656191690880679.9094653-UTR-D-herbacea_M_contig92:665412..665619Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 665413..665619 +
1622935734.263332-UTR-D-herbacea_M_contig92:666213..6663601622935734.263332-UTR-D-herbacea_M_contig92:666213..666360Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 666214..666360 +
1690880679.933654-UTR-D-herbacea_M_contig92:666213..6663601690880679.933654-UTR-D-herbacea_M_contig92:666213..666360Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 666214..666360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935734.248059-CDS-D-herbacea_M_contig92:665619..6662131622935734.248059-CDS-D-herbacea_M_contig92:665619..666213Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 665620..666213 +
1690880679.9237454-CDS-D-herbacea_M_contig92:665619..6662131690880679.9237454-CDS-D-herbacea_M_contig92:665619..666213Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 665620..666213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig92.15853.1

>prot_D-herbacea_M_contig92.15853.1 ID=prot_D-herbacea_M_contig92.15853.1|Name=mRNA_D-herbacea_M_contig92.15853.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=198bp
MRNPPPNTTPQARHQRYASSEARVCYRQQESRLQHPSPTLHYRSPQRWQH
RPPHYRPPVDPRHRFLLRLRPPGRPPFAAPVAAPAPAPGRLLLRLVRVRP
GGCLLRARQCLPMRSLLRPPRPPPWRWPLAALAVAGAFGAGGKSGGFGFR
AAGSGRCAAAAVAEPAAAAASSAPPAASPPFHSSPSKLRCAPPRRPD*
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mRNA from alignment at D-herbacea_M_contig92:665413..666360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig92.15853.1 ID=mRNA_D-herbacea_M_contig92.15853.1|Name=mRNA_D-herbacea_M_contig92.15853.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=948bp|location=Sequence derived from alignment at D-herbacea_M_contig92:665413..666360+ (Desmarestia herbacea DmunM male)
CCCCCTCTAAACGGACCCTGTGGCATTACGACCAATACTAAGCCTCCTCC
TCCCCCCTCGACAAGCTAACTCGCAACATTAGCAGCCAGGGCGTTGTTAA
GACCAAACTTTTCCAACATACACAAAACTCTCAAACCTTCACCGCCCCCT
GCCCCACTCGCATCCGGACAACCACAACCGGGCACATTCTGCTACATAAA
GCTAAGCATGCGTAACCCCCCTCCCAATACCACACCGCAAGCGCGGCACC
AGCGTTACGCTTCCTCCGAGGCAAGGGTATGTTATCGCCAGCAAGAGTCG
CGTCTTCAACATCCCTCTCCTACTCTCCACTACCGCTCGCCTCAGCGTTG
GCAACACCGCCCCCCCCACTATCGCCCGCCGGTCGATCCGCGCCATCGTT
TCCTGCTGCGCCTCCGACCTCCTGGGCGACCTCCTTTTGCTGCTCCTGTT
GCTGCTCCTGCTCCTGCTCCTGGGCGTTTGCTTCTGCGTTTGGTGCGGGT
GCGTCCCGGGGGGTGCCTTCTGCGGGCGCGGCAGTGCTTGCCAATGCGCT
CGCTTCTGCGGCCGCCGCGGCCGCCTCCGTGGCGATGGCCTCTTGCTGCA
TTAGCTGTCGCTGGTGCATTTGGTGCTGGTGGTAAATCTGGTGGTTTTGG
ATTTCGTGCGGCTGGTTCAGGTCGATGTGCTGCTGCTGCTGTTGCTGAAC
CTGCTGCTGCTGCTGCATCGTCTGCGCCGCCAGCTGCATCGCCGCCATTC
CACTCATCCCCATCGAAGCTGCGATGTGCTCCCCCCCGGAGGCCAGACTA
GGGTACCCTCCCATCCCAGGCACGCCATATCCTGGCATGCCAGGGTACCC
GTGAGCCTGAAACGGGTAGGACATCCCCATCATCCCGGGATAACCCCCGT
ACATCCCGAGATGGCCGTACCCCGCGTGCATCATCTGAGACGCCCCGC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig92:665413..666360+

>mRNA_D-herbacea_M_contig92.15853.1 ID=mRNA_D-herbacea_M_contig92.15853.1|Name=mRNA_D-herbacea_M_contig92.15853.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1188bp|location=Sequence derived from alignment at D-herbacea_M_contig92:665413..666360+ (Desmarestia herbacea DmunM male)
ATGCGTAACCCCCCTCCCAATACCACACCGCAAGCGCGGCACCAGCGTTA
CGCTTCCTCCGAGGCAAGGGTATGTTATCGCCAGCAAGAGTCGCGTCTTC
AACATCCCTCTCCTACTCTCCACTACCGCTCGCCTCAGCGTTGGCAACAC
CGCCCCCCCCACTATCGCCCGCCGGTCGATCCGCGCCATCGTTTCCTGCT
GCGCCTCCGACCTCCTGGGCGACCTCCTTTTGCTGCTCCTGTTGCTGCTC
CTGCTCCTGCTCCTGGGCGTTTGCTTCTGCGTTTGGTGCGGGTGCGTCCC
GGGGGGTGCCTTCTGCGGGCGCGGCAGTGCTTGCCAATGCGCTCGCTTCT
GCGGCCGCCGCGGCCGCCTCCGTGGCGATGGCCTCTTGCTGCATTAGCTG
TCGCTGGTGCATTTGGTGCTGGTGGTAAATCTGGTGGTTTTGGATTTCGT
GCGGCTGGTTCAGGTCGATGTGCTGCTGCTGCTGTTGCTGAACCTGCTGC
TGCTGCTGCATCGTCTGCGCCGCCAGCTGCATCGCCGCCATTCCACTCAT
CCCCATCGAAGCTGCGATGTGCTCCCCCCCGGAGGCCAGACTAGATGCGT
AACCCCCCTCCCAATACCACACCGCAAGCGCGGCACCAGCGTTACGCTTC
CTCCGAGGCAAGGGTATGTTATCGCCAGCAAGAGTCGCGTCTTCAACATC
CCTCTCCTACTCTCCACTACCGCTCGCCTCAGCGTTGGCAACACCGCCCC
CCCCACTATCGCCCGCCGGTCGATCCGCGCCATCGTTTCCTGCTGCGCCT
CCGACCTCCTGGGCGACCTCCTTTTGCTGCTCCTGTTGCTGCTCCTGCTC
CTGCTCCTGGGCGTTTGCTTCTGCGTTTGGTGCGGGTGCGTCCCGGGGGG
TGCCTTCTGCGGGCGCGGCAGTGCTTGCCAATGCGCTCGCTTCTGCGGCC
GCCGCGGCCGCCTCCGTGGCGATGGCCTCTTGCTGCATTAGCTGTCGCTG
GTGCATTTGGTGCTGGTGGTAAATCTGGTGGTTTTGGATTTCGTGCGGCT
GGTTCAGGTCGATGTGCTGCTGCTGCTGTTGCTGAACCTGCTGCTGCTGC
TGCATCGTCTGCGCCGCCAGCTGCATCGCCGCCATTCCACTCATCCCCAT
CGAAGCTGCGATGTGCTCCCCCCCGGAGGCCAGACTAG
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