mRNA_D-herbacea_M_contig92.15846.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig92.15846.1
Unique NamemRNA_D-herbacea_M_contig92.15846.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig92.15846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig92contigD-herbacea_M_contig92:489083..491324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig92.15846.1prot_D-herbacea_M_contig92.15846.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig92 489083..491286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935733.778001-CDS-D-herbacea_M_contig92:489082..4891581622935733.778001-CDS-D-herbacea_M_contig92:489082..489158Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 489083..489158 -
1690880679.766231-CDS-D-herbacea_M_contig92:489082..4891581690880679.766231-CDS-D-herbacea_M_contig92:489082..489158Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 489083..489158 -
1622935733.7907734-CDS-D-herbacea_M_contig92:491041..4912861622935733.7907734-CDS-D-herbacea_M_contig92:491041..491286Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 491042..491286 -
1690880679.7790818-CDS-D-herbacea_M_contig92:491041..4912861690880679.7790818-CDS-D-herbacea_M_contig92:491041..491286Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 491042..491286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935733.8072932-UTR-D-herbacea_M_contig92:491286..4913241622935733.8072932-UTR-D-herbacea_M_contig92:491286..491324Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 491287..491324 -
1690880679.796498-UTR-D-herbacea_M_contig92:491286..4913241690880679.796498-UTR-D-herbacea_M_contig92:491286..491324Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 491287..491324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig92.15846.1

>prot_D-herbacea_M_contig92.15846.1 ID=prot_D-herbacea_M_contig92.15846.1|Name=mRNA_D-herbacea_M_contig92.15846.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=107bp
MASASRASDNATGGLDTIEDLRRELLEMKRERKAEQQQSREELKDLREQL
REQTASSSDTNSVAAEDMGEHPRGRDVHASTRQLGVTLKGTLSTCSGCSL
GKGRRKP
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mRNA from alignment at D-herbacea_M_contig92:489083..491324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig92.15846.1 ID=mRNA_D-herbacea_M_contig92.15846.1|Name=mRNA_D-herbacea_M_contig92.15846.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=2242bp|location=Sequence derived from alignment at D-herbacea_M_contig92:489083..491324- (Desmarestia herbacea DmunM male)
AGTGTAACTCTCGGTGGTTAGGCTTAGGATAGGGTAACATGGCTTCGGCC
TCTAGAGCTTCGGACAATGCTACAGGCGGACTCGATACCATTGAGGATCT
GCGCCGCGAACTCCTCGAGATGAAGAGAGAACGCAAGGCCGAACAGCAGC
AGTCGAGGGAGGAGCTCAAGGACCTCCGAGAACAACTCAGGGAGCAGACA
GCATCTTCGAGCGACACCAACAGCGTCGCCGCAGAAGACATGGGAGAGCA
TCCACGAGGACGAGACGTCCACGCCAGTACCAGGTACTTTCTTGGTGGTC
ATAGAGCCACTACCGTACATGTACCCAAATTCGATGGTGCTGAGGCAGAG
TACCGCATGTGACGCAAGAAGATAATGTCATGCTTCCTACAACTCGAGTG
TAGATCAGCGATTGAGCCTACAGACAATCCCGTGAAAATAGGAGACGAAC
GGACAACCGAGCGCATGTCGCGCTGGAACCACAGCGCTGACGACGTAGAC
GCAGCTAGGCGTGCATGGACTACTCTATGCGACTCGGTAACCTCGCCAGC
CCTCACGAACAAAGCTTATGCGTTTGGTTCGCCTAGCGAGGCATGGGCAA
TGCTCGACAATTGGTACAAGCCAAAAGGCATCGTAATGCTGCAGCAATGG
ACTGCAAAGTATGCGAGCGTCCGCATGTACCCGGGGGAAGACCCCCGACT
ATACTTGAGCCGCATCGACGATATTGTTGACATGCTAGAGGCGTTCGGTG
TCCACAAGACTGAGGGGGAGGTTAACATGAAGATAATAGGGCAACTAACC
CACGACTACGACGTTGAACAGCGTACCGCTTTCATGCAAGAAACCTTGAC
CCGCGCGCAAATCGACAAGATAGTCCGCGAACGCTACATGCACTTGAACG
GCACGTGGGGGGCTAGTAGTGCCCTCACCGCGGCCGGCCGACGTCGTGGG
CGCCGCGGGGAAGATCGGAGAAAAAAGGGGGGTGGTGCCAGCAACGTCAC
TAGTAGCAATAGAGGTGCCGGTTTCGGCTCCAACCAACGATGGTGGGGCT
GGTCCAACGGCGGCAGTAGCCACGTCAGCAACAACAACAGTAGTCATGGT
GGGGGGAGTAGTCGTGTAGGTAGAGGTGGCAGCAACCGGGGTAGCGGCGG
TGGCCGTGGGGGCGGTGGTCGCGGCGGGGGTGGTTGCGGCGGAGGTGGTC
ACGGCGGTCGAGATTGGTGCGGCAGAGGTGCTGGTCGTGGTGGTCATTCC
AGCTACAGCAACGACGGGCAGGAATTCGCCAGCCAAGCCCCACGCCCGCG
ATGCTCGCGCTGTGACCGCATAGGCCACACCAAGGCCCAGTGTTACGGCA
GGGTAGTGTTTGACAGGCCTGCCCCCCGCGGCGGCTTCATGGCCCAAACG
TACGACGGCGATGCACCGTCCACCGACCCACCACCGTACAACAACCTCGG
CTTCAACCCGCCGCCGCCCAGCTCCATCGGAACGTCTGCGAGTCAGGTGG
ATTCCTCTTTAACAGCGTACAGTAGAGTGTATCCCTACAACCAGGCTCTC
ACCGCGCGTGTAGCGCCCACTGGTACGGTAGCTCTGTCTGGGCAAAGCGG
GTGTGTGCGCGTGGATGGGCGTGATGTATGGGTCAGTGACAGTGGGGCTT
CCATGCATATGACTAATGATCGTCCCCGCATGTACGACTGTGTTGCCCCC
TCCCCCGAGAATGCGTCGATCCTAATAGGCGATTTGACAGAGTACCGTGT
AGAGTGTTGCGGAAAATTGGACGTAATTTTTCACTGCGAGGTAGACATCC
CCATTACCCTCGTTGACGTGGCGTTCGTTCCTGGCTTGGGGTACAATCTG
TTCTCCCTGCATGCTGTGCAAGTGAGAGAGACTACCACACTCGATTCCGC
TGGTGTGCATCGTTTGGGGGTAACTTGTTTTTTCCGCGTAGTAAAGCAGG
CTCGCATCTGACTGCGTCAAGAACTGAGTGGAGACGAGATGTTCCGACTG
TCTATGTTCCGACTGTCACACTGGCTACACCAGCCATCCCCTCTGCCCCA
ATTTGTCTTGCAACGATCGCTCCCGGCAAGATGCCTACTACACGGATTGT
AGATATCAATGACATGCATGTCTCGTATTCCCACGCCCATGATGCACTTT
CGCTTGACACCTCTAGGCAGCTAGGTGTGACCCTGAAGGGCACTTTGTCC
ACGTGTTCGGGGTGTTCTCTGGGGAAGGGGCGCCGAAAGCCG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig92:489083..491324-

>mRNA_D-herbacea_M_contig92.15846.1 ID=mRNA_D-herbacea_M_contig92.15846.1|Name=mRNA_D-herbacea_M_contig92.15846.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=642bp|location=Sequence derived from alignment at D-herbacea_M_contig92:489083..491324- (Desmarestia herbacea DmunM male)
ATGGCTTCGGCCTCTAGAGCTTCGGACAATGCTACAGGCGGACTCGATAC
CATTGAGGATCTGCGCCGCGAACTCCTCGAGATGAAGAGAGAACGCAAGG
CCGAACAGCAGCAGTCGAGGGAGGAGCTCAAGGACCTCCGAGAACAACTC
AGGGAGCAGACAGCATCTTCGAGCGACACCAACAGCGTCGCCGCAGAAGA
CATGGGAGAGCATCCACGAGGACGAGACGTCCACGCCAGTACCAGATGGC
TTCGGCCTCTAGAGCTTCGGACAATGCTACAGGCGGACTCGATACCATTG
AGGATCTGCGCCGCGAACTCCTCGAGATGAAGAGAGAACGCAAGGCCGAA
CAGCAGCAGTCGAGGGAGGAGCTCAAGGACCTCCGAGAACAACTCAGGGA
GCAGACAGCATCTTCGAGCGACACCAACAGCGTCGCCGCAGAAGACATGG
GAGAGCATCCACGAGGACGAGACGTCCACGCCAGTACCAGGCAGCTAGGT
GTGACCCTGAAGGGCACTTTGTCCACGTGTTCGGGGTGTTCTCTGGGGAA
GGGGCGCCGAAAGCCGGCAGCTAGGTGTGACCCTGAAGGGCACTTTGTCC
ACGTGTTCGGGGTGTTCTCTGGGGAAGGGGCGCCGAAAGCCG
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