mRNA_D-herbacea_M_contig92.15841.1 (mRNA) Desmarestia herbacea DmunM male
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Overview
Homology
BLAST of mRNA_D-herbacea_M_contig92.15841.1 vs. uniprot
Match: A0A6H5L8H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H1_9PHAE) HSP 1 Score: 203 bits (516), Expect = 5.190e-52 Identity = 192/525 (36.57%), Postives = 241/525 (45.90%), Query Frame = 2
Query: 254 KGTTPVKF-GGRVTKAIGQAPSDSAAKEEEDVRK-SARWGVAPPP------LPNLGGLGNPIAAVKDSVSXXXXXXXXXXXXLYGAADAAGSLAELTQKQLSDGGKGPPSSAKSDGVDAATEGSPSFSALMKSSGAAATPGGDSGGLGASLKALGEGVVAVKDAFWVSVDLLGGAAEAAKNAPDTARSVAEEGRAAIE-------GAKERAQAIIATKDAAIDAVSEAVGGAGKAXSSIKEGAYXXADAVSRLASIPSELETRREREQQEREERAIVSATERRETARKLDAAVSTAKAAVWGTVGGVETLVDTVVAAPAAVGDGLGKAQNAVTEAGELLESIPRTVQEIPLE-------AQRKVDGVLASVTATQNTANELIASLKGGVDGVSSFAKKAGAIASGKAAEEKAERERQAAEALRLEKQKNALVTFQGEPYTAKDLSVAAFKAIGATAKGAVGVGKGVVDVVSGAGNAPAEAARVILGPVYRYQQSKKRVQNAIALDLSRASPPPPVEPSPSGLVEG 1762
KGT VKF GGRVT+ + Q D+ EEEDVRK SARWGV PP +P++ L NP+ V S+ YGAADAAGS+AE Q G AA +G +S P GG +L+ L G VA KDAFW S+D L AA GAKE AQA+ X XX E+ +R R+Q+ER V +AKA VWGTV GV+ LVD V + PAAV AQ+KVDGVLASVT+TQ +A ++ +KGGVD VSS A++A A+A+GK AEA R EK KNALVTF GEPYTAKD++ A KA+GATA+GAV VGKG+ A + P E AR +LGP+Y+YQQS+KRVQ+A+ L + ++P V+ +PS G
Sbjct: 110 KGTNSVKFAGGRVTRPVEQPEGDNKDDEEEDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAAYGAADAAGSIAEQVQGVADAAAAGK----------AAGDGGAMPQLAATASVTPVVPSNAPGGAKRALRLLVGGAVAAKDAFWGSLDTLSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKENAQAVARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAEKRRRQQEERLXXXXXXXXXXXXXXXXXXXXVESAKAVVWGTVEGVDHLVDAVASTPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQKKVDGVLASVTSTQASAESFVSGVKGGVDTVSSLAQRAAAVATGKEXXXXXXXXXXXAEARRKEKMKNALVTFGGEPYTAKDIAFATLKALGATAQGAVVVGKGLFGFAREARSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRTASAPTARVDDAPSSAAGG 624
BLAST of mRNA_D-herbacea_M_contig92.15841.1 vs. uniprot
Match: D7G6H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H7_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 3.090e-16 Identity = 148/487 (30.39%), Postives = 180/487 (36.96%), Query Frame = 2
Query: 140 RGGGRVTTMAVPSKSPSPPPSSKLSATSTAGTKKKSPPKGTTPVKF-GGRVTKAIGQAPSDSAAKEEEDVRK-SARWGVAPPP------LPNLGGLGNPIAAVKDSVSXXXXXXXXXXXXLYGAADAAGSLAELTQ---------KQLSDGGKGPPSSAKSDGVDAATEGSPSFSALMKSSGAAATPGGDSGGLGASLKALGEGVVAVKDAFWVSVDLLGGAAEAAKNAPDTARSVAEEGRAAIEGAKE-------RAQAIIATKDAAIDAVSEAVGGAGKAXSSIKEGAYXXADAVSRLASIPSELETRREREQQEREERAIVSATERRETARKLDAAVSTAKAAVWGTVGGVE-------TLVDTVVAAPAAVGDGLGKAQNAVTEAGELLESIPRTVQEIPLEAQRKVDGVLASVTATQNTANELIASLKGGVDGVSSFAKKAGAIASGKAAEEKAERERQAAEALRLEKQKNALVTFQGEPYT 1507
R GG + A S SP+PP + SA S KGT+ VKF GGRVT+ + Q P + EEEDVRK SARWGV PP +P++ L NP+ V S+ +YGAADAAGS+AE Q K DGG P +A + A +P GG +L+ L G VA KDAFW S+D LG A A+ X KEG Y DAVSRLA WGTV GV+ AQ+KVDGVLASV +TQ +A ++ +KGGVD VSS A++A A+A+GK AEA R EK KNALVTF GEPYT
Sbjct: 71 RRGGAPLSEAPSSSSPTPP--KRPSA---------SKKKGTSAVKFAGGRVTRPV-QQPEGNKDDEEEDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAAGSVAEQVQGVADAAAAGKAPGDGGAMPQLAATASVTPVAPSNAP-------------------GGAKRALRLLVGGAVAAKDAFWGSLDALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHAVXXXXXXXXXXXXXXXXXXXXXXXXXKEGVYGAVDAVSRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGTVEGVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQKKVDGVLASVASTQASAESFVSGVKGGVDTVSSLAQRASAVATGKEKXXXXXXXXXXAEARRKEKMKNALVTFGGEPYT 526
BLAST of mRNA_D-herbacea_M_contig92.15841.1 vs. uniprot
Match: D7G6H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H8_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 6.850e-12 Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 2
Query: 1502 YTAKDLSVAAFKAIGATAKGAVGVGKGVVDVVSGAGNAPAEAARVILGPVYRYQQSKKRVQNAIALDLSRASPPPPVEPSPS 1747
Y+AKD++ A KA+GATA+GAV VGKG+ A + P E AR +LGP+Y+YQQS+KRVQ+A+ L ++P V+ +PS
Sbjct: 2 YSAKDIAFATLKALGATAQGAVVVGKGLFGFAKEAKSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVDVAPS 83 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig92.15841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig92.15841.1 >prot_D-herbacea_M_contig92.15841.1 ID=prot_D-herbacea_M_contig92.15841.1|Name=mRNA_D-herbacea_M_contig92.15841.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=629bp MAVPSKSPSPPPSSKLSATSTAGTKKKSPPKGTTPVKFGGRVTKAIGQAPback to top mRNA from alignment at D-herbacea_M_contig92:332650..343688+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_M_contig92.15841.1 ID=mRNA_D-herbacea_M_contig92.15841.1|Name=mRNA_D-herbacea_M_contig92.15841.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=11039bp|location=Sequence derived from alignment at D-herbacea_M_contig92:332650..343688+ (Desmarestia herbacea DmunM male)back to top Coding sequence (CDS) from alignment at D-herbacea_M_contig92:332650..343688+ >mRNA_D-herbacea_M_contig92.15841.1 ID=mRNA_D-herbacea_M_contig92.15841.1|Name=mRNA_D-herbacea_M_contig92.15841.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=3774bp|location=Sequence derived from alignment at D-herbacea_M_contig92:332650..343688+ (Desmarestia herbacea DmunM male)back to top |