mRNA_D-herbacea_M_contig9.15696.1 (mRNA) Desmarestia herbacea DmunM male
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Overview
Homology
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A6H5KM69_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KM69_9PHAE) HSP 1 Score: 273 bits (697), Expect = 2.000e-80 Identity = 170/302 (56.29%), Postives = 196/302 (64.90%), Query Frame = 1
Query: 142 ASAPDRSIVGPAGLELSRILEEQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNLSRPVQQQQHPAAR----------NPIDFDGSGDETADRSDGERATNREDSSPSFRQQPG-NHRDRLHKRYRQSQQASLVAGKDGSRGGVG-AGRVPGTPPS---QAP---KMLRLIRCDKTTVWCESRLSVRTSKGDGAGGGGIVAPLEIILTLRTVSEGSKTSMAHGLAGARV 993
+S D S V +G ELSRI+EE RR D VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHA++LSMLPDLVLAVCR+GEMTYVSPACQWLLLH+PE+MTGANIFELV +CHPLLRK+ISDNLSRPV+ AA + G G D P R++ G NHR+R +R RQ Q + G GG+G GR G P S Q P KMLR+ R DKTTVWCE RLSVR +K PLEI+LTLRTV+EG KT++A AG ++
Sbjct: 3 SSTGDSSSVVGSGFELSRIIEEHRRQDEKRRVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLLRKIISDNLSRPVKSIGGGAAAAGRRAAGSWSSAKSLQGEGSXXXXXXXXXXXXXXGDGEPQCREKKGGNHRERPQQRCRQPQS------QPGECGGIGNGGRGGGAPTSSSLQGPPKMKMLRVFRGDKTTVWCEGRLSVRNAKSHDGYSTAAPVPLEIVLTLRTVAEGGKTAVAREFAGGQL 298
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A835Z3F0_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F0_9STRA) HSP 1 Score: 120 bits (300), Expect = 9.300e-25 Identity = 58/108 (53.70%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 205 EQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNLS 528
++RR++ +KRAANRKSAS SRARKK +V++MT +NERM+++A IL++LPDL++A+ R+G ++YVS AC+ LL + E+M G ++F LVT DCH LR +I+D LS
Sbjct: 35 DRRRMEEKKLLKRAANRKSASASRARKKTFVEEMTIENERMRRNAQILALLPDLIVALSRAGAVSYVSGACETLLQRSTEDMRGTSLFALVTPDCHDTLRALIADTLS 142
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A835Z9B4_9STRA (BZIP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B4_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.300e-23 Identity = 49/93 (52.69%), Postives = 73/93 (78.49%), Query Frame = 1
Query: 235 VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMI 513
+KRAANRKSAS SRARKK +V++M+ +N+RM+++A IL++LPDL++A+CR G ++YVS AC+ L EEM G ++F+LVT +CH L ++
Sbjct: 1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLL 93
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: D7FNF3_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF3_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.340e-16 Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 238 KRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNL 525
KRAANR+SA+T R RKK +V++M NERM++ A +LS+LPD++LA+ R G +TY S C+ L +E+ G NIF+LV H LR+++ +NL
Sbjct: 54 KRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLRRLLEENL 149
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A6H5KPQ7_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.380e-15 Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 238 KRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNL 525
KRAANR+SA+T R RKK +V++M NERM++ A +LS+LPD++LA+ R G +TY S C+ L +E+ G NIF+LV H L +++ +NL
Sbjct: 70 KRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLWRLLEENL 165
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A7S2UHM5_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHM5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.740e-15 Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = 1
Query: 118 LEAERETMASAPDRSIVGPAGLELSRILEEQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNLSRPVQQQQHPAARNPIDFDGSGDETADR 609
LEA + + +A ++ I P L +L + R+ + KR ANRKSA TSRARKKA V++MT N R+++ AMILS+LPD+V+A+ GE+T+ S + +L H ++ GA + +++ L ++ SD ++ ++ D + G+ET DR
Sbjct: 378 LEAHVQFLRNA-NQPIPQPVAL----LLADARKKEEKRTAKRVANRKSACTSRARKKALVEEMTKTNARLRRQAMILSLLPDMVVAITEDGEITFCSAQVERILRHPVTDLVGAKLTDILVPSSREALDRLTSDLVATEESKE--------TDANNKGEETTDR 528
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A7S2V9B7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V9B7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.810e-14 Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 172 PAGLELSRILEEQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMI 513
P +S +L + +R KR ANRKSASTSRARKKAYV +MT N R+K+ A+ILS+LPD+V+A+ SG++T+ S + +L E+ GAN+ L+ L ++I
Sbjct: 239 PVPQTVSLLLADAKRKADKRNAKRIANRKSASTSRARKKAYVQEMTELNARLKRQALILSLLPDMVIAIGESGDITFCSAQVERVLRFDSAELVGANLSNLLVPSSKEKLNRLI 352
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A7S4VJ34_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VJ34_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.150e-13 Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 196 ILEEQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISD 519
+L E RR + KR ANRKSA TSRARKKA V++MT N R+++ A+IL++LPDLV+A+ G +T+ S + +L H E++ G+N+ +++ LR ++ +
Sbjct: 41 LLAEARRREEKRTAKRVANRKSACTSRARKKALVEEMTRTNARLRRQALILALLPDLVIAITIDGTITFCSAQVERVLRHKEEDLVGSNLNDVLMPLSRGALRHLVKE 148
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A448YZH8_9STRA (PAS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZH8_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.040e-13 Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 238 KRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISD 519
KR ANRKSAS SRARKKA V++MT N R+K+ AMIL++LPDLV+ GE+T+ S + +L + +++ GA ++ L+ L+ +I +
Sbjct: 26 KRVANRKSASNSRARKKALVEEMTKTNARLKKQAMILALLPDLVMTTTTDGEITFCSAQAERILRYKTDDLVGAKLYNLLVPSSRHALKTLIEE 119
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Match: A0A7S3VAF3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAF3_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.300e-13 Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 196 ILEEQRRLDXXXXVKRAANRKSASTSRARKKAYVDDMTAKNERMKQHAMILSMLPDLVLAVCRSGEMTYVSPACQWLLLHAPEEMTGANIFELVTHDCHPLLRKMISDNLSRPVQQQQHPAARNPIDFDGSG 591
+L R+++ KR ANR+SA TSRARKKA V +MT N R+++ A+ILS+LPDLV+A+ GE+T+ S + +L H +M GANI E++T P R IS + + V ++ + + D SG
Sbjct: 616 LLAGARKVEEKRAAKRIANRRSACTSRARKKALVAEMTKTNARLRRQAVILSLLPDLVIAIKVDGEITFCSAQVERVLRHKVRDMVGANIGEVLT----PSSRAHISGLIDKLVAAEKQMLEESNKEGDESG 743 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig9.15696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig9.15696.1 >prot_D-herbacea_M_contig9.15696.1 ID=prot_D-herbacea_M_contig9.15696.1|Name=mRNA_D-herbacea_M_contig9.15696.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=539bp MASAPDRSIVGPAGLELSRILEEQRRLDERRRVKRAANRKSASTSRARKKback to top mRNA from alignment at D-herbacea_M_contig9:2307646..2310416- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_M_contig9.15696.1 ID=mRNA_D-herbacea_M_contig9.15696.1|Name=mRNA_D-herbacea_M_contig9.15696.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=2771bp|location=Sequence derived from alignment at D-herbacea_M_contig9:2307646..2310416- (Desmarestia herbacea DmunM male)back to top Coding sequence (CDS) from alignment at D-herbacea_M_contig9:2307646..2310416- >mRNA_D-herbacea_M_contig9.15696.1 ID=mRNA_D-herbacea_M_contig9.15696.1|Name=mRNA_D-herbacea_M_contig9.15696.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=3234bp|location=Sequence derived from alignment at D-herbacea_M_contig9:2307646..2310416- (Desmarestia herbacea DmunM male)back to top |