mRNA_D-herbacea_M_contig9.15695.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig9.15695.1
Unique NamemRNA_D-herbacea_M_contig9.15695.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig9.15695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig9contigD-herbacea_M_contig9:2306591..2307423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size833
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig9.15695.1prot_D-herbacea_M_contig9.15695.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig9 2306596..2307201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935678.8752038-UTR-D-herbacea_M_contig9:2306590..23065951622935678.8752038-UTR-D-herbacea_M_contig9:2306590..2306595Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig9 2306591..2306595 +
1690880653.94908-UTR-D-herbacea_M_contig9:2306590..23065951690880653.94908-UTR-D-herbacea_M_contig9:2306590..2306595Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig9 2306591..2306595 +
1622935678.9059944-UTR-D-herbacea_M_contig9:2307201..23074231622935678.9059944-UTR-D-herbacea_M_contig9:2307201..2307423Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig9 2307202..2307423 +
1690880653.975176-UTR-D-herbacea_M_contig9:2307201..23074231690880653.975176-UTR-D-herbacea_M_contig9:2307201..2307423Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig9 2307202..2307423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935678.8891318-CDS-D-herbacea_M_contig9:2306595..23072011622935678.8891318-CDS-D-herbacea_M_contig9:2306595..2307201Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig9 2306596..2307201 +
1690880653.9642434-CDS-D-herbacea_M_contig9:2306595..23072011690880653.9642434-CDS-D-herbacea_M_contig9:2306595..2307201Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig9 2306596..2307201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig9.15695.1

>prot_D-herbacea_M_contig9.15695.1 ID=prot_D-herbacea_M_contig9.15695.1|Name=mRNA_D-herbacea_M_contig9.15695.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=202bp
MGSIRCTVVVSTRILIVDTHTRMIQVLIVRLTKQKVIPYYTKWILISFVS
FTLKLLIVISRGGWEASIARSRPDSTKGTTGVATAIEQAPPKGYEIILII
PMHHDHILQHSSGSSTIITINPKLTHVQCLPSSPSSTLATDARSNKNSRR
PPVRQSDVALRCLLIKSPATTTIVQRRKQKTKQTILRKSSTVPKMLLKHL
L*
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mRNA from alignment at D-herbacea_M_contig9:2306591..2307423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig9.15695.1 ID=mRNA_D-herbacea_M_contig9.15695.1|Name=mRNA_D-herbacea_M_contig9.15695.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=833bp|location=Sequence derived from alignment at D-herbacea_M_contig9:2306591..2307423+ (Desmarestia herbacea DmunM male)
TTGTCATGGGATCTATCCGCTGTACTGTTGTTGTATCTACTCGTATACTG
ATTGTCGACACGCATACTCGTATGATCCAAGTACTAATAGTGCGCCTGAC
AAAACAAAAAGTGATTCCATATTATACAAAATGGATATTAATATCGTTTG
TTTCATTCACGTTAAAGCTATTAATAGTGATAAGCCGAGGTGGATGGGAG
GCATCCATAGCGAGGAGTCGCCCCGACAGCACGAAGGGCACCACAGGCGT
TGCAACAGCTATAGAGCAGGCTCCACCAAAGGGCTACGAAATAATCCTTA
TCATACCTATGCATCATGATCACATACTACAGCACAGTAGTGGTAGCAGT
ACCATCATTACAATTAATCCCAAACTCACACACGTACAATGTCTACCGTC
ATCACCCTCGTCCACGCTTGCAACCGACGCGAGATCCAACAAAAACAGCC
GCCGCCCCCCCGTACGGCAAAGCGACGTTGCGCTGCGCTGTTTACTGATT
AAATCTCCCGCCACTACTACTATTGTTCAACGACGCAAACAAAAAACAAA
ACAAACGATTCTTCGAAAATCAAGCACGGTGCCAAAAATGCTACTAAAGC
ACCTACTGTAGTACCAGTAAATTTTTCCGTCGAATACTCAAACTCAAGCT
ATCTCTACCCGGAAACAAATATCACGAAGACAACAACCAAGCGTGGTCGC
TGTTGGGAGAGCGAAAGGCGTCATGGGTTGCCAGGTCACCGTACACAAAA
AAGAAAAAAAACAGCAACGACAACGCGTGAGCAAAATAAAGATGCACGCC
ACGATCTGAGCCAAGAGCGCAACAACTTGCGCC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig9:2306591..2307423+

>mRNA_D-herbacea_M_contig9.15695.1 ID=mRNA_D-herbacea_M_contig9.15695.1|Name=mRNA_D-herbacea_M_contig9.15695.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1212bp|location=Sequence derived from alignment at D-herbacea_M_contig9:2306591..2307423+ (Desmarestia herbacea DmunM male)
ATGGGATCTATCCGCTGTACTGTTGTTGTATCTACTCGTATACTGATTGT
CGACACGCATACTCGTATGATCCAAGTACTAATAGTGCGCCTGACAAAAC
AAAAAGTGATTCCATATTATACAAAATGGATATTAATATCGTTTGTTTCA
TTCACGTTAAAGCTATTAATAGTGATAAGCCGAGGTGGATGGGAGGCATC
CATAGCGAGGAGTCGCCCCGACAGCACGAAGGGCACCACAGGCGTTGCAA
CAGCTATAGAGCAGGCTCCACCAAAGGGCTACGAAATAATCCTTATCATA
CCTATGCATCATGATCACATACTACAGCACAGTAGTGGTAGCAGTACCAT
CATTACAATTAATCCCAAACTCACACACGTACAATGTCTACCGTCATCAC
CCTCGTCCACGCTTGCAACCGACGCGAGATCCAACAAAAACAGCCGCCGC
CCCCCCGTACGGCAAAGCGACGTTGCGCTGCGCTGTTTACTGATTAAATC
TCCCGCCACTACTACTATTGTTCAACGACGCAAACAAAAAACAAAACAAA
CGATTCTTCGAAAATCAAGCACGGTGCCAAAAATGCTACTAAAGCACCTA
CTGTAGATGGGATCTATCCGCTGTACTGTTGTTGTATCTACTCGTATACT
GATTGTCGACACGCATACTCGTATGATCCAAGTACTAATAGTGCGCCTGA
CAAAACAAAAAGTGATTCCATATTATACAAAATGGATATTAATATCGTTT
GTTTCATTCACGTTAAAGCTATTAATAGTGATAAGCCGAGGTGGATGGGA
GGCATCCATAGCGAGGAGTCGCCCCGACAGCACGAAGGGCACCACAGGCG
TTGCAACAGCTATAGAGCAGGCTCCACCAAAGGGCTACGAAATAATCCTT
ATCATACCTATGCATCATGATCACATACTACAGCACAGTAGTGGTAGCAG
TACCATCATTACAATTAATCCCAAACTCACACACGTACAATGTCTACCGT
CATCACCCTCGTCCACGCTTGCAACCGACGCGAGATCCAACAAAAACAGC
CGCCGCCCCCCCGTACGGCAAAGCGACGTTGCGCTGCGCTGTTTACTGAT
TAAATCTCCCGCCACTACTACTATTGTTCAACGACGCAAACAAAAAACAA
AACAAACGATTCTTCGAAAATCAAGCACGGTGCCAAAAATGCTACTAAAG
CACCTACTGTAG
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