prot_D-herbacea_F_contig113.1000.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig113.1000.1
Unique Nameprot_D-herbacea_F_contig113.1000.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length238
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1000.1 vs. uniprot
Match: D8LH18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH18_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 7.120e-59
Identity = 99/158 (62.66%), Postives = 123/158 (77.85%), Query Frame = 0 
Query:   83 GQQALE---ILRQAVETRKTPAGEVSEALEGLAEAEETGLPAVIAADDVEGTWELVFSTQLASGYMPVKELIGFYPSSGEVSINTTFGPLPIGGMRGKCWWKGGIENELAFSMDAMQFGPFKIARNNADVKTYQFFLHQGSILAAKSSAGGCALLSQV 237
            GQ+++E   +LR AVETRK P  EVSEAL  LA   + G P    A+DVEG+WELVFSTQL SGYMP++EL+GFYPS  E SI+ T GPLPIGGMRGKCWW+GG ENELAF + A++ GPFK  ++  +VKTY+FF++ G +LAA+SSAGG ALLS+V
Sbjct:   67 GQESVEPAAVLRTAVETRKVPMTEVSEALRVLAA--DGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGFALLSRV 222
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BLAST of mRNA_D-herbacea_F_contig113.1000.1 vs. uniprot
Match: A0A836CJ46_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ46_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.850e-26
Identity = 69/170 (40.59%), Postives = 103/170 (60.59%), Query Frame = 0 
Query:   76 TAVITAEGQQALEILRQAVETRKTPAGEVSEALEGLAEAEETGLPAVIAADDVEG-TWELVFSTQLASGYMPVKELIGFYPSSGEVSINTTFGP-LPIGGMRGKCWWK---GGIENELAFSMDAMQFGPF---KIARNNADVKTYQFFLHQGSILAAKSSAGGCALLSQV 237
            TA +   G  AL  + ++V+TR+ PA  V +ALE L +  +      +   DV+G  WELVFS+QL+ GYMPV+E+I F  S+G++S++TTFGP +P+GG++G C W+   G     ++F++  +  GP    K     A  KTY FF     +LAA+SS GG A+L +V
Sbjct:   40 TAAVDLSGAVAL--VLESVDTRQIPAENVVQALESLEQKAQA-----VRQQDVDGLNWELVFSSQLSKGYMPVREVICFDISNGKISLSTTFGPGIPLGGIQGTCSWQEPEGSQPGVVSFNLSKVLLGPIAFEKPGAKEAPPKTYSFFFSGDGVLAARSSNGGVAVLKKV 202
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH18_ECTSI7.120e-5962.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ46_9STRA9.850e-2640.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..237
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.821

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:82539..91253 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1000.1mRNA_D-herbacea_F_contig113.1000.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig113 81586..91384 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig113.1000.1 ID=prot_D-herbacea_F_contig113.1000.1|Name=mRNA_D-herbacea_F_contig113.1000.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=238bp
MAPCLIAALLVTSLAAGSVNAFHIAGMPLSSSTSSTQVAQRASITAVLRH
RHFGLLDRKGGSLAVTGEAGEEVGGTAVITAEGQQALEILRQAVETRKTP
AGEVSEALEGLAEAEETGLPAVIAADDVEGTWELVFSTQLASGYMPVKEL
IGFYPSSGEVSINTTFGPLPIGGMRGKCWWKGGIENELAFSMDAMQFGPF
KIARNNADVKTYQFFLHQGSILAAKSSAGGCALLSQV*
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