prot_D-herbacea_F_contig112.973.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig112.973.1
Unique Nameprot_D-herbacea_F_contig112.973.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length88
Homology
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BLAST of mRNA_D-herbacea_F_contig112.973.1 vs. uniprot
Match: D7FTZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.930e-12
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   21 ASARCIPPGAPSGGEWVQDKHCGTFSWCLGLLFPCI-CFCPCDHRSVYVVKGAKYNS 76
            ++ R  PPGAP+GGEWVQ+++CG    C+ L+  C+ C+ P D R VYVV+G KY +
Sbjct:   29 SAGRTPPPGAPAGGEWVQERYCGCCESCVKLICCCLFCYTPFDSRMVYVVEGKKYKA 85
[Close]
BLAST of mRNA_D-herbacea_F_contig112.973.1 vs. uniprot
Match: D8LRX4_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX4_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.210e-5
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 0 
Query:   24 RCIPPGAPSGGEWVQDKHCGTFSWCLGLLFP-----CICFCPCDHRSVYVVKGAKYNSYGRQ 80
            R IPP AP GG+W Q+++CG  +W + L        C+  CPCD R+    K  +  + G++
Sbjct:  116 RNIPPNAPDGGQWKQERYCGLITWLVALFVVPFIGCCMPCCPCDERTAAGGKVVRSAATGQR 177
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTZ4_ECTSI2.930e-1249.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRX4_ECTSI2.210e-535.48WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:72281..90231 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.973.1mRNA_D-herbacea_F_contig112.973.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig112 72281..90245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig112.973.1 ID=prot_D-herbacea_F_contig112.973.1|Name=mRNA_D-herbacea_F_contig112.973.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=88bp
AYSAVKQQRLSIEPNEVKKPASARCIPPGAPSGGEWVQDKHCGTFSWCLG
LLFPCICFCPCDHRSVYVVKGAKYNSYGRQVSDGCCA*
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