prot_D-herbacea_F_contig111.959.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_F_contig111.959.1
Unique Name	prot_D-herbacea_F_contig111.959.1
Type	polypeptide
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length	327

Homology

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BLAST of mRNA_D-herbacea_F_contig111.959.1 vs. uniprot
Match: A0A6H5JNG5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG5_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 1.230e-86
Identity = 131/222 (59.01%), Postives = 165/222 (74.32%), Query Frame = 0

Query:   79 LVRRRHVLNCYKCGETPRQPRDNRCVVFCRICPRKACLACQD-KISEDRVGWTPGRDEYSKFFEIPMCEKCKTGADDAIPPLTRLPWVDGEEREISEGEMRARLSKFLDWLGSNDLAHFFADEVDAEEYPEYAETVKHPMNLARMRKRLKGGHYDDRRAGRNAFMADVDWIRHNCFTFNGELAAISRSAAILVRRATRYNDYHIAPADNVLRRPGTEGARRP 299
            +VR  HVL C+ C + PRQP+D R VVFC+ CPRKACL CQ+ K+++DR GW PGRD + +++EIP C +C+ G+DD +P     PW++GE  EISEG+ R  L KFL WL +++LAHFF DEVD  EYP+Y ETVK PMN  RMR+RL+ G YD RRAG N+FM DVDW+RHNC  +NGE AAISR A +L RRA +Y D H+AP  N+LRRPG+ GA RP
Sbjct:  805 VVRHMHVLQCFLCLQYPRQPKDGRPVVFCQKCPRKACLRCQETKVTKDRTGWVPGRDTFGRYYEIPECNECQKGSDDEVPAWVEPPWMEGEGLEISEGDTRRLLDKFLHWLQNHELAHFFVDEVDPAEYPDYRETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDVDWVRHNCIKYNGERAAISRCAVLLARRAEKYYDTHVAPMVNILRRPGSGGAHRP 1026

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BLAST of mRNA_D-herbacea_F_contig111.959.1 vs. uniprot
Match: D7FI70_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI70_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 2.270e-65
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 0

Query:   79 LVRRRHVLNCYKCGETPRQPRDNRCVVFCRICPRKACLACQD-KISEDRVGWTPGRDEYSKFFEIPMCEKCKTGADDAIPPLTRLPWVDGEEREISEGEMRARLSKFLDWLGSNDLAHFFADEVDAEEYPEYAETVKHPMNLARMRKRLKGGHYDDRRAGRNAFMADVDWIRHNCFTFNG 257
            +VR  HVL C+ C + PRQP+D R VVFC+ CPRKACL CQ+ K+S+DR GW PGRD + ++FEIP C +C+ G+DD +P     PW++GE REISEG+    L KFL WL +++LAHFF DE           TVK PMN  RMR+RL+ G YD RRAG N+FM DVDW+RHNC  FNG
Sbjct:  260 VVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETKLSKDRTGWVPGRDTFGRYFEIPECSECQKGSDDEVPAWVEPPWMEGEGREISEGDTSRLLEKFLHWLQNHELAHFFVDE-----------TVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDVDWVRHNCIKFNG 428

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BLAST of mRNA_D-herbacea_F_contig111.959.1 vs. uniprot
Match: F4R4W5_MELLP (Bromo domain-containing protein (Fragment) n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R4W5_MELLP)

HSP 1 Score: 54.3 bits (129), Expect = 7.100e-6
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 0

Query:  185 LDWLGSNDLAHFFADEVDAE--EYPEYAETVKHPMNLARMRKRL--KGGHYDDRRAGRNAFMADVDWIRHNCFTFNGELAAISRSA 266
            L +L    LA  F   VDAE  + P+Y   +KHPM+LA +  RL  K  +Y         F+ADV+ I +NC+T+NG  + ISR A
Sbjct:    2 LKYLKKQKLAAPFLHPVDAEKLQIPDYPTIIKHPMDLATVETRLALKPSYYKSA----EEFIADVNLIFNNCYTYNGHESTISRMA 83

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig111.959.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig111.959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JNG5_9PHAE	1.230e-86	59.01	Bromo domain-containing protein n=1 Tax=Ectocarpus...	[more]
D7FI70_ECTSI	2.270e-65	56.11	Bromo domain-containing protein n=1 Tax=Ectocarpus...	[more]
F4R4W5_MELLP	7.100e-6	40.70	Bromo domain-containing protein (Fragment) n=1 Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001487	Bromodomain	SMART	SM00297	bromo_6	coord: 170..282 e-value: 3.9E-6 score: 36.4
IPR001487	Bromodomain	PFAM	PF00439	Bromodomain	coord: 182..266 e-value: 2.7E-13 score: 49.8
IPR001487	Bromodomain	PROSITE	PS50014	BROMODOMAIN_2	coord: 189..263 score: 15.066
IPR036427	Bromodomain-like superfamily	GENE3D	1.20.920.10		coord: 173..286 e-value: 6.1E-21 score: 76.3
IPR036427	Bromodomain-like superfamily	SUPERFAMILY	47370	Bromodomain	coord: 168..275
None	No IPR available	PANTHER	PTHR46453	FAMILY NOT NAMED	coord: 195..272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig111	contig	D-herbacea_F_contig111:687332..704461 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig111.959.1	mRNA_D-herbacea_F_contig111.959.1	Desmarestia herbacea DmunF female	mRNA	D-herbacea_F_contig111 687330..704461 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_F_contig111.959.1 ID=prot_D-herbacea_F_contig111.959.1|Name=mRNA_D-herbacea_F_contig111.959.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=327bp
GGDAAAPVQAEGLLSAGRKRVVSDAGASAATKAKKRAGGAGAGALSDNGG
DYSAPSARVLMQQEETTTAVSQKKTVSNLVRRRHVLNCYKCGETPRQPRD
NRCVVFCRICPRKACLACQDKISEDRVGWTPGRDEYSKFFEIPMCEKCKT
GADDAIPPLTRLPWVDGEEREISEGEMRARLSKFLDWLGSNDLAHFFADE
VDAEEYPEYAETVKHPMNLARMRKRLKGGHYDDRRAGRNAFMADVDWIRH
NCFTFNGELAAISRSAAILVRRATRYNDYHIAPADNVLRRPGTEGARRPP
PTEPKRRRQQQEPKTRGGAGSVAVDDA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036427	Bromodomain-like_sf
IPR001487	Bromodomain