prot_D-herbacea_F_contig109.782.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-herbacea_F_contig109.782.1
Unique Name	prot_D-herbacea_F_contig109.782.1
Type	polypeptide
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length	152

Homology

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BLAST of mRNA_D-herbacea_F_contig109.782.1 vs. uniprot
Match: A0A6H5JMM1_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.080e-12
Identity = 55/137 (40.15%), Postives = 73/137 (53.28%), Query Frame = 0

Query:   15 MEEASGGENVMPASSSRGDFILVANEGDHQLPLRNRVASSSSADFQHQ-------DKQAPLRFF--RTQANSQAFMIALYMLVSMSLTLLDKWLITGLGFDAPLSLVMTTYFIMHLVTTLIRSRARRRERHRGEEEG 142
            M EA GG         R  F  V++  + +  + + + S SS   + Q       D    +R    + Q N    +I LYM VSMSLTLLDKWL+TG+GF+APL+L+  TY IMHLV+   R+  R    HRG EEG
Sbjct:    1 MVEARGGYG-----DRRRGFNRVSSTEEQEGDIEHVLVSKSSGRARQQALVHANSDDGGVMRCGSRKVQVNLILGIILLYMWVSMSLTLLDKWLMTGMGFNAPLTLISLTYLIMHLVSLSTRTWLR----HRGVEEG 128

[Close]

BLAST of mRNA_D-herbacea_F_contig109.782.1 vs. uniprot
Match: D7FL66_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL66_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.500e-12
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 0

Query:   72 RTQANSQAFMIALYMLVSMSLTLLDKWLITGLGFDAPLSLVMTTYFIMHLVTTLIRSRARRRERHRGEEEG 142
            + Q N    ++ LY+ VSMSLTLLDKWL+TG+GF+APL+L+  TY IMHLV+  IR+  R    HRG EEG
Sbjct:  270 KVQVNLILGIVLLYIWVSMSLTLLDKWLMTGMGFNAPLTLISLTYLIMHLVSLSIRTWLR----HRGVEEG 336

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig109.782.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig109.782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JMM1_9PHAE	3.080e-12	40.15	TPT domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FL66_ECTSI	4.500e-12	56.34	TPT domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 107..126
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..78
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 96..106
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..95
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 127..152
None	No IPR available	TMHMM	TMhelix		coord: 111..128
None	No IPR available	TMHMM	TMhelix		coord: 79..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig109	contig	D-herbacea_F_contig109:735277..742591 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female	2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-16
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig109.782.1	mRNA_D-herbacea_F_contig109.782.1	Desmarestia herbacea DmunF female	mRNA	D-herbacea_F_contig109 735277..742611 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-herbacea_F_contig109.782.1 ID=prot_D-herbacea_F_contig109.782.1|Name=mRNA_D-herbacea_F_contig109.782.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=152bp
MIVGINASADKEPKMEEASGGENVMPASSSRGDFILVANEGDHQLPLRNR
VASSSSADFQHQDKQAPLRFFRTQANSQAFMIALYMLVSMSLTLLDKWLI
TGLGFDAPLSLVMTTYFIMHLVTTLIRSRARRRERHRGEEEGGSVITRRL
SG