prot_D-herbacea_F_contig1078.702.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1078.702.1
Unique Nameprot_D-herbacea_F_contig1078.702.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length175
Homology
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.620e-53
Identity = 110/177 (62.15%), Postives = 127/177 (71.75%), Query Frame = 0
Query:    2 ADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAM 174
            ADKIAVIDKGVVELGTHSELLAL GVY MLC+ Q GKTEEE+  D  AR+A+QKS SG    RE       + RQ S V+   +  LS S   K  + EEEKLP P R RMW+LNK DWPWL+LGV+GAI+AGGT P+EGVFIAHVQ  +Y     EMR +GN WA+GFV LGLTA+
Sbjct:  493 ADKIAVIDKGVVELGTHSELLALNGVYHMLCTSQGGKTEEEMEADKQARLARQKSLSGAKVAREASGSDALLRRQSSNVNAGHEIDLSASAGKKDAKVEEEKLPKPPRGRMWSLNKGDWPWLVLGVIGAIIAGGTAPSEGVFIAHVQVWVY-----EMRTIGNRWALGFVGLGLTAL 664          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.710e-45
Identity = 95/147 (64.63%), Postives = 108/147 (73.47%), Query Frame = 0
Query:    2 ADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQ 144
            ADKIAVIDKGVVELGTHSELLAL GVY MLC+ Q GKTEEEI  D  AR+A+QKS SG    RE       + RQ S V+  ++  LS S   K  + EEEKLP P R RMW+LNK DWPWL+LGV+GAI+AGGT P+EGVFIAHVQ
Sbjct:  565 ADKIAVIDKGVVELGTHSELLALNGVYHMLCTSQGGKTEEEIEADIQARLARQKSLSGAKVTREASGSDALLRRQSSNVNPGQEIDLSASAGKKDAKVEEEKLPKPPRGRMWSLNKGDWPWLVLGVIGAIIAGGTTPSEGVFIAHVQ 711          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 6.050e-44
Identity = 95/176 (53.98%), Postives = 115/176 (65.34%), Query Frame = 0
Query:    2 ADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQ-DTAARIAKQ------KSGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLG 170
            ADKIAVIDKGVVELGTHSELLAL GVY  LCS Q G T E +A  D A  +         +SG+G V +    +       +      G S +   K +E++EEKLPAP   RMWALNK DWPWLL+G +GA+VAGG  P+EGVF+A  QSNLY  DT +MR++GN WA+GFV LG
Sbjct:  596 ADKIAVIDKGVVELGTHSELLALNGVYHTLCSSQTGGTTEGLAGGDNAMELRTSNENIASESGAGDVKSGSPKDATPGGAPMD-----GSSGADKQKSKEEQEEKLPAPASGRMWALNKGDWPWLLMGFVGAVVAGGCAPSEGVFLAQGQSNLYLEDTEQMRKIGNRWALGFVGLG 766          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.190e-28
Identity = 76/188 (40.43%), Postives = 108/188 (57.45%), Query Frame = 0
Query:    1 NADKIAVI-DKGVVELGTHSELLALRGVYVMLC----------SGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAM 174
            +AD+IAV+ ++G+ ELGTHSELLA  G+Y  LC          S       +  A+   AR A+QKS S   A     +    MH+ +    +   G ++     K E +E K P P  SRMWALNK +  +L+LG++GA++AG  FP EGV IA++Q+NLY TD  ++R VG  W++GFV L   A+
Sbjct:  603 DADRIAVVAEQGIAELGTHSELLAKNGIYTALCTIEGPGAGNGSAAXXXAGDNGAEGVVARTARQKSASVESAKMRRQSSSAVMHKGQQPGGEGGDGAAEDKA--KGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGALMAGSLFPIEGVLIANMQNNLYATDPDKVRSVGEKWSLGFVGLAAVAI 788          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.860e-25
Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 0
Query:    1 NADKIAVI-DKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQ--DTAARIAKQKSGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTR--SRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTA 173
            N+D+IAVI +KGV E+GTH+EL AL G+Y  LC  Q G T        D A      KS             M R RS S    + +  +V   K+        AP    SR+WALN+ DW W+++G++GA + G  FP EG+ IA++Q+  Y T+  +MRR G+ W +GFVFL + A
Sbjct:  533 NSDRIAVIANKGVAEIGTHAELTALGGIYSQLCKAQGGGTGAAAGATGDDALDAETDKSLRDYS--------MQRTRSHS----SSVDGAVKGGKKXXXXXXXDAPRAPMSRLWALNRPDWMWVVVGLVGAFITGSLFPTEGIIIANIQNTFYLTNADDMRRTGHLWTLGFVFLAIAA 698          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: A0A6H5JGF0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.850e-21
Identity = 64/111 (57.66%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    2 ADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRM 108
            ADKIAVIDKGVVELGTHSELLAL+G+Y MLC+ Q GKTEEEI  D  AR+A+QKS SG    RE       + RQ S V    +  LS S   K  + +EEKLP P R RM
Sbjct:  643 ADKIAVIDKGVVELGTHSELLALKGIYHMLCTSQGGKTEEEIEADKQARLARQKSFSGAKVAREASGSDALLRRQSSNVKAGHEIDLSASAGKKDAKVDEEKLPKPPRCRM 753          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.050e-20
Identity = 61/176 (34.66%), Postives = 93/176 (52.84%), Query Frame = 0
Query:    1 NADKIAVI-DKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNRMHRQRSV----SKDEDTGLSDSV--TAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFL 169
            N+D+IAVI ++GV E+GTHSEL+AL G+Y  LC+ Q G        D A R  +++S +     R   +      +       DE  G   +   T KK++  ++  P    SR+WA+ + DWPW+ +G+ GA + G  FP EG+ +A +Q   Y   + E+   G  W +GFV L
Sbjct:  671 NSDRIAVIANRGVAEIGTHSELMALDGIYAQLCAAQSG------GADAAQRALRRQSSAEATRQRSLRDNSSSAMAAIGGGQADEGAGEGGAKGKTGKKDDNADK--PKAPLSRLWAMQRPDWPWVAMGIGGATLCGAMFPVEGIILAKLQEAFYLRTSEEILDQGTSWVLGFVGL 838          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.420e-20
Identity = 63/110 (57.27%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    2 ADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSR 107
            ADKIAVIDKGVVELGTHSELLAL GVY MLC+ Q GKTEEEI  D  AR+A+QKS SG    RE       + RQ S  +  ++  LS S   K  + EEEKLP P  +R
Sbjct:  576 ADKIAVIDKGVVELGTHSELLALNGVYHMLCTSQGGKTEEEIEADKQARLARQKSFSGAKVTREASGSDALLRRQSSNFNPGQEIDLSASAGKKDAKVEEEKLPKPPSAR 685          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: UPI0009A2C3FE (LOW QUALITY PROTEIN: multidrug resistance protein 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2C3FE)

HSP 1 Score: 77.0 bits (188), Expect = 3.260e-13
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 0
Query:    2 ADKIAVIDKGV-VELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAK--KEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGL 171
            AD IA    GV VE GTH+EL+   GV+  L   Q  K+ EE          + +    G    E+ N +H+ R++S    T   + +  +  K E +EEKL + +  +++ LNK++WP++ LGV+GA + G T PA  +  A + S   +TDT+ +R+  + +++ F  +G+
Sbjct:  585 ADMIASFQNGVLVEQGTHAELMQQNGVFHSLVLAQSFKSTEE----------ENRKQXNGEEQDESENLLHK-RTLSNKSSTRSGNEIETEVEKNEAKEEKLQSVSFLKLFKLNKSEWPYIFLGVIGASINGATHPAFCIIFAKIISIFTETDTAVIRQQADLYSILFFVIGI 746          
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Match: A0A6H5L6B5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.050e-12
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 0
Query:    1 NADKIAVI-DKGVVELGTHSELLALRGVYVMLCS-----GQRGKTE-----EEIAQDTAARIAKQKSGSGGVANRETVNRMHRQRS---VSKDEDTGLS-DSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAM 174
            +AD+IAV+ ++G+ ELGTHSELLA  G+Y  LC+     G  G        ++ A+   AR A+QKS S   A      +M RQ S   + K +  G   D  T  K + E++++                            AG  FP EGV IA++Q+NLY +D  ++R VG  W++GFV L   A+
Sbjct:  319 DADRIAVVAERGIAELGTHSELLAKNGIYTSLCAMQGPGGGNGSAAATAGGDDGAEGAVARTARQKSASVESA------KMRRQSSSAVMHKGQPGGEGGDGGTEAKAKGEDDEM----------------------------AGSLFPIEGVLIANMQNNLYASDPDKVRSVGEKWSLGFVGLAAVAI 473          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1078.702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J5U8_9PHAE1.620e-5362.15ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FHL4_ECTSI2.710e-4564.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL1_ECTSI6.050e-4453.98ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
D8LS12_ECTSI3.190e-2840.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CGZ9_9STRA2.860e-2539.33ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A6H5JGF0_9PHAE2.850e-2157.66ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z4J1_9STRA1.050e-2034.66ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
D7FHL5_ECTSI2.420e-2057.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0009A2C3FE3.260e-1331.79LOW QUALITY PROTEIN: multidrug resistance protein ... [more]
A0A6H5L6B5_9PHAE2.050e-1233.86ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3D1.20.1560.10coord: 76..174
e-value: 1.4E-18
score: 68.3
IPR036640ABC transporter type 1, transmembrane domain superfamilySUPERFAMILY90123ABC transporter transmembrane regioncoord: 105..172
NoneNo IPR availableGENE3D3.40.50.300coord: 1..75
e-value: 1.4E-18
score: 68.3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 136..154
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 175..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..174
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..135
NoneNo IPR availableTMHMMTMhelixcoord: 155..174
NoneNo IPR availableTMHMMTMhelixcoord: 118..140
IPR039421Type I protein exporterPANTHERPTHR24221FAMILY NOT NAMEDcoord: 1..173
IPR030275Multidrug resistance protein 3PANTHERPTHR24221:SF241PHOSPHATIDYLCHOLINE TRANSLOCATOR ABCB4coord: 1..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1078contigD-herbacea_F_contig1078:54109..76451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1078.702.1mRNA_D-herbacea_F_contig1078.702.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1078 54109..76452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1078.702.1 ID=prot_D-herbacea_F_contig1078.702.1|Name=mRNA_D-herbacea_F_contig1078.702.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=175bp
NADKIAVIDKGVVELGTHSELLALRGVYVMLCSGQRGKTEEEIAQDTAAR
IAKQKSGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAKKEEQEEEKL
PAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKT
DTSEMRRVGNWWAVGFVFLGLTAMM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030275MDR3
IPR039421Type_I_exporter
IPR036640ABC1_TM_sf