prot_D-herbacea_F_contig1040.502.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig1040.502.1
Unique Nameprot_D-herbacea_F_contig1040.502.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length417
Homology
BLAST of mRNA_D-herbacea_F_contig1040.502.1 vs. uniprot
Match: D8LET4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET4_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 2.620e-155
Identity = 231/377 (61.27%), Postives = 280/377 (74.27%), Query Frame = 0
Query:   42 YGDNRFRGFEPFPNYTREMSMTAGLLCLYGFINLVPGVYDLVRATTDGQDWSGDEDIYPPVVLHLAALIQVGFSLVSMAVGFQWLVSGGGTGKWTFFSAAFSLLASFTFVVAISYISFLADKKDFDFIPAVYNPSDSENRSVATLAILGYIAYAANNFGALIHLNYKMCQFQGEKWGGYNRAFYKKCLMFFGFLTLLAGLVQLALGSYVSDKVDEERLPSPVTGGQYSGPYRITYSEVAITFACFQVLLGCYILYRAFKKPA-GDGENHKGLKCFQYSAWFVLVFSICTQVLTQASMESTTSLQNDAEVGFATQAVAYVVGLGLFPIYLDVMYYTTPETVEQGHFSCNVP-WKKEAAD-EERKVESFPAAATTAAAP 415
            YGDNR  G +PF  YT+EMS+TAG+LCL+GFINLVPGVYDL  +T DGQDWSG+ D++PPVV HLAALIQ+ FS+VSMAVGFQ+LV GG    WT  S   S  + FTF V+++Y  FL+ K+ FDFIP+ Y  S SENRSVA++  + Y+AYA NNF AL+HLNYKM  +Q ++W G+NR FYK  LMF G LTLLAG VQLALG+YV DKVDE+RL SP+     SGP  +TYS +AI F  FQ++LGCYI+ RA +KP+ G GEN KGL+ FQ++AWFVLV SIC QVL+Q +M ST++   D   GFA QAVAYVVGLGLFP+YLD MYYTTPET++Q  F  +V  W K   D EERKVES    A   AAP
Sbjct:    5 YGDNRLLGLDPFGRYTKEMSVTAGMLCLFGFINLVPGVYDLCLSTIDGQDWSGNSDVFPPVVRHLAALIQITFSIVSMAVGFQYLVCGGACSHWTMISLFCSFFSLFTFAVSVAYTGFLSAKESFDFIPSEYGASTSENRSVASMIAIAYVAYAINNFFALVHLNYKMFMYQSDQWVGFNRGFYKTALMFVGLLTLLAGTVQLALGAYVFDKVDEDRLSSPLGAIFLSGPLLVTYSRLAIAFGAFQLVLGCYIMVRATQKPSSGSGENAKGLQAFQFAAWFVLVLSICIQVLSQVTMSSTSTNIVDRYAGFAAQAVAYVVGLGLFPMYLDAMYYTTPETIDQNDFCGDVSAWSKGKGDIEERKVESASVEAQAVAAP 381          
BLAST of mRNA_D-herbacea_F_contig1040.502.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 5.180e-58
Identity = 128/357 (35.85%), Postives = 186/357 (52.10%), Query Frame = 0
Query:   39 MATYGDNRFRGFEPFPNYTREMSMTAGLLCLYGFINLVPGVYDLVRATTDGQDWSGDEDIYPPVVLHLAALIQVGFSLVSMAVGFQWLVSGGGTGKWTFFSAAFSLLASFTFVVAISYISFLADKKD-------FDFIPAVYNPSDSENRSVATLAILGYIAYAANNFGALIHLNYKMCQFQGEKWGGYNRAFYKKCLMFFGFLTLLAGLVQLALGSYVSDKVDEERLPSPVTGGQYSGPYRITYSEVAITFACFQVLLGCYILYRAFKKPAGDGENHK--GLKCFQYSAWFVLVFSICTQVLTQASMESTTSLQNDAEVGFATQAVAYVVGLGLFPIYLDVMYYTTPETVEQGHFS 386
            M +YG+ R     P  N   +++ T+GL+  YG I ++ G  DL  A+  G DWSG + ++PP+ + LA L    F LVSM +GFQ++ S  G+   + F    +L A F F+  ++ I+F AD  +          +    + S  E  S+A + ILG+  YA    GAL  L +KM +F       Y+  +Y+  L ++GFL+L+ G +Q+ALGS+V       +LPSPV     SGP+ I + E++IT    QVL G YILYR+     G    +K  G+  FQ  AW V + S+  QVL Q S+         A        +  V+G  LFPIYLDV+ +TTPE V    FS
Sbjct:    1 MTSYGEARLMD-SPRANLVDDLTTTSGLILAYGIIVIIGGTVDLTAASAKGVDWSGSDGVFPPIAILLAQLTVTLFGLVSMFLGFQYVASRWGSKVTSLFGLGITLAAWFPFLTTVALIAFQADHGNVGGGAGPLQILHPTISVSQGEINSIALMGILGFWGYAGTVIGALTFLQWKMYRFFQGGASTYSATYYRSRLGYYGFLSLMVGALQVALGSFVEGMFGWGQLPSPVV----SGPFFILWPELSITVGVCQVLFGFYILYRSTTPGVGPSTGNKDAGMFKFQVVAWSVFLISMGAQVLGQVSL---------AASAMPALFIRNVIGFALFPIYLDVLSHTTPENVTPDMFS 343          
BLAST of mRNA_D-herbacea_F_contig1040.502.1 vs. uniprot
Match: A0A836CMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.410e-47
Identity = 117/337 (34.72%), Postives = 172/337 (51.04%), Query Frame = 0
Query:   56 YTREMSMTAGLLCLYGFINLVPGVYDLVRATTDGQDWSGDEDIYPPVVLHLAALIQVGFSLVSMAVGFQWLVSGGGTGKWTFFSAAFSLLASFTFVVAISYISFLAD---KKDFDFIPAVYNPSDSENRSVATLAILGYIAYAANNFGALIHLNYKMCQFQGEKWGG---YNRAFYKKCLMFFGFLTLLAGLVQLALGSYVSDKVDEERLPSPVTGGQYSGPYRITYSEVAITFACFQVLLGCYILYRAFKKPAGDGENHKGLKCFQYSAWFVLVFSICTQVLTQASMESTTSLQNDAEVGFATQAVAYVVGLGLFPIYLDVMYYTTPETVEQGHFS 386
            Y  E+  TAGL  L+G + ++     +   T  GQ W+G+   +PP+ L LA L Q  F L ++ VG  WLVSG G+  W+FFS   +  A F F+  IS ISF  D   +    FIP    P+ ++  +V  LA LG+IAY AN  GAL     K+  F+     G   Y  A+Y     ++GFLTLLAG+VQLALG+YV D    +RL  P+     +GP+ +TYS+ +I      +  G  ++ R++     D +   G   F + + F  V  +  QVLTQ ++    +    + V F T A+A      +FP+YLD+   + PE      +S
Sbjct:    8 YLCEVRQTAGLAILFGSMAVLSACIGISEVTDIGQKWAGNSLTFPPIALLLANLTQALFGLSNIGVGLAWLVSGKGSVGWSFFSMVITYAAWFPFLTVISLISFTGDNYPQAPQPFIPMTLMPTTTDVNAVTALAALGFIAYGANLVGALTFCATKL--FRAHSVAGVTAYTGAYYASRQTYYGFLTLLAGVVQLALGAYVQDNFGSDRLLEPIA----AGPFTVTYSQASIAMGVLVMFQGALLMARSYMSK--DSKVATGA-AFDWWSVFAYVTVLAVQVLTQVAVAPAPAAGRASTV-FETLALA------VFPVYLDIKSRSAPEAFPSDFYS 328          
BLAST of mRNA_D-herbacea_F_contig1040.502.1 vs. uniprot
Match: K0TGC2_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGC2_THAOC)

HSP 1 Score: 93.2 bits (230), Expect = 2.690e-17
Identity = 83/326 (25.46%), Postives = 141/326 (43.25%), Query Frame = 0
Query:   59 EMSMTAGLLCLYGFINLVPGVYDLVRATTDGQDWSGDEDIYPPVVLHLAALIQVGFSLVSMAVGFQWLVSGGGTGKWTFFSAAFSLLASFTFVVAISYISF--LADKKDFDFIPAVYNPSDSENRSVATLAILGYIAYAANNFGALIHLNYKMCQFQGEKWGGYNRAFYKKCLMFFGFLTLLAGLVQLALGSYVSDKVDEERLPSPVTGGQYSGPYRITYSEVAITFACFQVLLGCYILYRAFK-KPAGDGENHKGLKCFQYSAWFVLVFSICTQVLTQASMESTTSLQNDAEVGFATQAVAYVVGLGLFPIYLDVMYYTTPETVE 381
            +  M +GLL   G         D+V      +          P+   +AA+ Q  F L  M VGF   V   G+   T  +A+   LA   F+V +S I    ++D  +  FIPA+Y+PS +  + V ++A LG ++YA         +++ M   Q  K    +  +++     +  L  LAGLVQLALGS++ +      L +P+    ++  + +   E+++T    Q+++    + R+ + KPA D         FQ   +F+    +  QVL Q +         DA    A       +G+ L P +LD      PE ++
Sbjct:   22 DYRMYSGLLLTLGLCAAYGAFADIVSLADTAKSGL-------PLATLIAAVFQGFFGLTCMGVGFTGAVMDKGSTLLTTIAASSIQLAWMPFLVGLSTIGMGIVSDPSENPFIPALYDPSAAAVKFVGSMAFLGLMSYAIGFIXXXXXMSFSMHSIQAGKPQDRSGVYFRGRAKLYNGLLFLAGLVQLALGSFIINTYGNGPLEAPI----FAVVFLVFSPEISVTIGLLQMIVSTIGIVRSLREKPAPDSV------WFQTLCFFMYFCMMSMQVLAQVAQAP-----GDAAASAAPTLACVYLGIALMPAFLDWKMNNLPEDLD 325          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1040.502.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LET4_ECTSI2.620e-15561.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LES9_ECTSI5.180e-5835.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMW6_9STRA3.410e-4734.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TGC2_THAOC2.690e-1725.46Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 251..273
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..296
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 162..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 338..348
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..134
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 208..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 103..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 370..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..250
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..316
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 349..369
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..161
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 317..337
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 274..296
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 317..335
NoneNo IPR availableTMHMMTMhelixcoord: 101..123
NoneNo IPR availableTMHMMTMhelixcoord: 185..207
NoneNo IPR availableTMHMMTMhelixcoord: 350..369
NoneNo IPR availableTMHMMTMhelixcoord: 228..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1040contigD-herbacea_F_contig1040:48081..58637 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1040.502.1mRNA_D-herbacea_F_contig1040.502.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig1040 48081..58637 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig1040.502.1 ID=prot_D-herbacea_F_contig1040.502.1|Name=mRNA_D-herbacea_F_contig1040.502.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=417bp
IQRARTHTTATATAVPTAQQLNSTKQTPQQQQLHHNNTMATYGDNRFRGF
EPFPNYTREMSMTAGLLCLYGFINLVPGVYDLVRATTDGQDWSGDEDIYP
PVVLHLAALIQVGFSLVSMAVGFQWLVSGGGTGKWTFFSAAFSLLASFTF
VVAISYISFLADKKDFDFIPAVYNPSDSENRSVATLAILGYIAYAANNFG
ALIHLNYKMCQFQGEKWGGYNRAFYKKCLMFFGFLTLLAGLVQLALGSYV
SDKVDEERLPSPVTGGQYSGPYRITYSEVAITFACFQVLLGCYILYRAFK
KPAGDGENHKGLKCFQYSAWFVLVFSICTQVLTQASMESTTSLQNDAEVG
FATQAVAYVVGLGLFPIYLDVMYYTTPETVEQGHFSCNVPWKKEAADEER
KVESFPAAATTAAAPAA
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