prot_D-herbacea_F_contig102.360.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig102.360.1
Unique Nameprot_D-herbacea_F_contig102.360.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length260
Homology
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BLAST of mRNA_D-herbacea_F_contig102.360.1 vs. uniprot
Match: A0A6H5K305_9PHAE (Phosphatidate cytidylyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K305_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.410e-33
Identity = 72/107 (67.29%), Postives = 83/107 (77.57%), Query Frame = 0 
Query:  154 GQGIPDYLASVSRDGSGNVNGVVPGGGKKGDLGVRTRSTLILVGSFIAIIVQLRQTGCAILVAFLQWALFKEGMAIVRDDVCEVLLEAEKGGGRALRRRQWGVFWVL 260
            G GI     + + DG+G   G  P    KGDLGVRTRSTLILVGSF+ IIV+L+QTGCAILVAFLQWA+F+EGMAIVRD V  VLLE EKGG ++LRR+QWGV WVL
Sbjct:   84 GGGISASGGASAGDGAGVALGRKPETKPKGDLGVRTRSTLILVGSFLTIIVKLKQTGCAILVAFLQWAIFREGMAIVRDGVSGVLLETEKGGAKSLRRQQWGVLWVL 190
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K305_9PHAE5.410e-3367.29Phosphatidate cytidylyltransferase n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..260
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.771

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:559528..568940 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.360.1mRNA_D-herbacea_F_contig102.360.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig102 559528..569116 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig102.360.1 ID=prot_D-herbacea_F_contig102.360.1|Name=mRNA_D-herbacea_F_contig102.360.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=260bp
MLRCVLLAAAAVAVVVTGATTPGGCRSRGGSSWQKSRQYLTSQADLRGGS
RGLQLIGTHGTKTQETPNHDCEHQPQHQRQRVGEGAAAPPSTRTATTCTQ
GFPTRFVSPSRNVLFSESRKKKNGWEKEGVVRGDEEAWCANGGVRGVAGL
RGGGQGIPDYLASVSRDGSGNVNGVVPGGGKKGDLGVRTRSTLILVGSFI
AIIVQLRQTGCAILVAFLQWALFKEGMAIVRDDVCEVLLEAEKGGGRALR
RRQWGVFWVL
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