mRNA_D-herbacea_F_contig121.1540.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig121.1540.1
Unique NamemRNA_D-herbacea_F_contig121.1540.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig121.1540.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.420e-26
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 FRRLAERHGLESMTSASSRLRAHLHAVVSRGVQEGLFFRNRALRGVSTATIPPDYHRS-PTSQHLSYSMSSLAYPIRRPAMEPWLNSKEASSWR 279
            FRRLAERHGLESMT AS++LRAHLHAVVSRGVQEGLFFRNR   G + A  P DY R  P SQ    S +S+ YP+RRP  EPW NSKE  SWR
Sbjct:  473 FRRLAERHGLESMTKASNQLRAHLHAVVSRGVQEGLFFRNR---GSAAAAGPADYGRGGPLSQFQHPSGASMPYPVRRP--EPW-NSKEGESWR 560
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig121.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7H2_9PHAE3.420e-2668.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig121contigD-herbacea_F_contig121:734212..735499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.994103-CDS-D-herbacea_F_contig121:734212..7343881622927615.994103-CDS-D-herbacea_F_contig121:734212..734388Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig121 734213..734388 -
1690790258.1735246-CDS-D-herbacea_F_contig121:734212..7343881690790258.1735246-CDS-D-herbacea_F_contig121:734212..734388Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig121 734213..734388 -
1622927616.0078795-CDS-D-herbacea_F_contig121:735396..7354991622927616.0078795-CDS-D-herbacea_F_contig121:735396..735499Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig121 735397..735499 -
1690790258.1823256-CDS-D-herbacea_F_contig121:735396..7354991690790258.1823256-CDS-D-herbacea_F_contig121:735396..735499Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig121 735397..735499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig121.1540.1prot_D-herbacea_F_contig121.1540.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig121 734213..735499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig121.1540.1

>prot_D-herbacea_F_contig121.1540.1 ID=prot_D-herbacea_F_contig121.1540.1|Name=mRNA_D-herbacea_F_contig121.1540.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=93bp
FRRLAERHGLESMTSASSRLRAHLHAVVSRGVQEGLFFRNRALRGVSTAT
IPPDYHRSPTSQHLSYSMSSLAYPIRRPAMEPWLNSKEASSWR
back to top

mRNA from alignment at D-herbacea_F_contig121:734212..735499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig121.1540.1 ID=mRNA_D-herbacea_F_contig121.1540.1|Name=mRNA_D-herbacea_F_contig121.1540.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1288bp|location=Sequence derived from alignment at D-herbacea_F_contig121:734212..735499- (Desmarestia herbacea DmunF female)
TTCAGGCGATTGGCAGAGCGACACGGTCTTGAGTCCATGACGTCGGCCAG
CAGCCGACTCCGTGCCCATCTTCACGCGGTGGTCTCGAGAGGGGTTCAAG
AAGGTGAGAGAGATTCCTCCTCTGAGAAGGTCCCCCAGTCCCCTCATCTC
GCTCTCTTGCGGACGAAGTTGTTTTTTTGGTCGTGATATATATGGTCTCC
CTCAGATGTGAAAACTAATGAATCGTATCGGACTACTGGTATTATATGTC
ATCATCGTTTATATGCCTCGGATGTGAAAACTTTGTACTTCGTATATTTT
AGGCTTATACAAATTACTTACGTAATATTATGCCCTGATAAAAAATATAT
GTCTCATGTACTGTCTATTGCTGTATTATCGGATGGTAAATAGTCGTCAT
CCTTACTCTCTCTCGGATGTGAAAACGGTAAGTATTACCTGGTAGACTAT
ACTTGTAAAAAAAAAATCGGTCGAAGTGTTTCCAGAAACGAAGGCGTTTT
GAGTTGGCAAACGAGGGGAACGGAGGGGGACGGGTGAGGGGGGGGGGTGA
AAACGGCGACCATTTGTACGAGCAACGGGTTTGTCGGTTACTTGGCTGGT
TATCATGCGTTATCATGCGCAAACGGCGCGTTCGACTGATTTTGGGTAAA
AACTGTGGTTGTCGATTCCCAGAGAGACCGGCATATGTTTGCTTGACGTG
GGACGCGTCGAATCGGTGCTACGGTATACAGATCTATACGGGTGAGTCGA
TGCTTGCTTGGCGTGACTGATCATAGAGCGTTGGCCTTACACCCCCCCCC
CCCCCTCTGCAAGTAGCCCTGCTCGATTAATCGGCCCCGCTCGGTGAAAC
GACGTGACACATCGCAAGTGAAATCTTGTTCTCTGACACGCTCTCGACCT
CGCGTCTGTCTGCGTGTATCGGTCGATTCGTCTTCTTTTGAATCGACCCT
TCTGCTTGTACCCCTTCCCCCAGTGGTGACGGTTGCACGGTGTGCGTCAT
CTCTCGTCCTACCCACCCTCGCCATGTCACTTTTTTTTTGTCCCCACTTT
TTACCTTGGCGCTGTGATATATAACCTGTTTTCTCGTGTGTGCTCCTTCC
TTTGACGTCAGGTCTGTTCTTCCGGAACCGCGCCCTCCGTGGTGTCTCGA
CGGCGACGATTCCCCCTGACTACCACCGTAGCCCCACCTCTCAACACCTA
TCGTACTCGATGAGCAGTCTCGCCTACCCTATCCGGCGACCAGCGATGGA
GCCATGGTTGAACTCCAAGGAGGCGTCGTCATGGCGGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig121:734212..735499-

>mRNA_D-herbacea_F_contig121.1540.1 ID=mRNA_D-herbacea_F_contig121.1540.1|Name=mRNA_D-herbacea_F_contig121.1540.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=558bp|location=Sequence derived from alignment at D-herbacea_F_contig121:734212..735499- (Desmarestia herbacea DmunF female)
TTCAGGCGATTGGCAGAGCGACACGGTCTTGAGTCCATGACGTCGGCCAG
CAGCCGACTCCGTGCCCATCTTCACGCGGTGGTCTCGAGAGGGGTTCAAG
AAGTTCAGGCGATTGGCAGAGCGACACGGTCTTGAGTCCATGACGTCGGC
CAGCAGCCGACTCCGTGCCCATCTTCACGCGGTGGTCTCGAGAGGGGTTC
AAGAAGGTCTGTTCTTCCGGAACCGCGCCCTCCGTGGTGTCTCGACGGCG
ACGATTCCCCCTGACTACCACCGTAGCCCCACCTCTCAACACCTATCGTA
CTCGATGAGCAGTCTCGCCTACCCTATCCGGCGACCAGCGATGGAGCCAT
GGTTGAACTCCAAGGAGGCGTCGTCATGGCGGGTCTGTTCTTCCGGAACC
GCGCCCTCCGTGGTGTCTCGACGGCGACGATTCCCCCTGACTACCACCGT
AGCCCCACCTCTCAACACCTATCGTACTCGATGAGCAGTCTCGCCTACCC
TATCCGGCGACCAGCGATGGAGCCATGGTTGAACTCCAAGGAGGCGTCGT
CATGGCGG
back to top