mRNA_D-herbacea_F_contig120.1454.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig120.1454.1
Unique NamemRNA_D-herbacea_F_contig120.1454.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig120.1454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig120contigD-herbacea_F_contig120:56762..57325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig120.1454.1prot_D-herbacea_F_contig120.1454.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig120 56768..57145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.1112332-UTR-D-herbacea_F_contig120:56761..567671622927599.1112332-UTR-D-herbacea_F_contig120:56761..56767Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig120 56762..56767 +
1690790251.9981272-UTR-D-herbacea_F_contig120:56761..567671690790251.9981272-UTR-D-herbacea_F_contig120:56761..56767Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig120 56762..56767 +
1622927599.1361613-UTR-D-herbacea_F_contig120:57145..573251622927599.1361613-UTR-D-herbacea_F_contig120:57145..57325Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig120 57146..57325 +
1690790252.014784-UTR-D-herbacea_F_contig120:57145..573251690790252.014784-UTR-D-herbacea_F_contig120:57145..57325Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig120 57146..57325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.122209-CDS-D-herbacea_F_contig120:56767..571451622927599.122209-CDS-D-herbacea_F_contig120:56767..57145Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig120 56768..57145 +
1690790252.006981-CDS-D-herbacea_F_contig120:56767..571451690790252.006981-CDS-D-herbacea_F_contig120:56767..57145Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig120 56768..57145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig120.1454.1

>prot_D-herbacea_F_contig120.1454.1 ID=prot_D-herbacea_F_contig120.1454.1|Name=mRNA_D-herbacea_F_contig120.1454.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=126bp
MRLRPPIGEYRPRLLSLGSACILATALPSSVPCPLLHENTNLLLFAPLVL
VLEKKTLALDGLNQALSSPSTTTVFIPSLSPNPADSPAHTPSIKVVSVGL
SATMSICLRVHPHPNALEVLYRWLS*
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mRNA from alignment at D-herbacea_F_contig120:56762..57325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig120.1454.1 ID=mRNA_D-herbacea_F_contig120.1454.1|Name=mRNA_D-herbacea_F_contig120.1454.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=564bp|location=Sequence derived from alignment at D-herbacea_F_contig120:56762..57325+ (Desmarestia herbacea DmunF female)
TCTCGTATGCGACTCCGGCCCCCTATCGGCGAGTATCGTCCTCGTCTTCT
GTCACTGGGCTCCGCGTGCATACTCGCCACCGCCCTACCCTCCAGTGTCC
CTTGCCCTCTTCTTCATGAAAATACCAACCTCCTCTTATTTGCACCTCTG
GTCCTAGTCTTAGAAAAGAAAACTCTCGCTCTGGATGGGCTCAACCAGGC
CCTATCCAGCCCGTCGACGACGACGGTCTTCATCCCATCCTTGTCACCGA
ATCCGGCCGATTCACCGGCGCACACTCCCTCTATCAAGGTTGTGAGCGTC
GGGCTTTCGGCGACGATGTCGATTTGCCTCCGCGTACACCCACACCCAAA
CGCACTCGAAGTGCTTTACCGCTGGTTATCTTGAAAATGCAAGGGTCCGC
GGGTCGTGGGGGGTGTACCTAATCGCACCGTGTTGACCCAACTCCACCAC
TAACACTACAGCCTCGACCCAGTCAGTAGCAAGAAGGAATCACTCCTCAA
GGGTGAGTCCGGCCTTACACCCGCCAGAAAGACCCTCCCCACGCTTCGCC
AACCCGGCAGGCCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig120:56762..57325+

>mRNA_D-herbacea_F_contig120.1454.1 ID=mRNA_D-herbacea_F_contig120.1454.1|Name=mRNA_D-herbacea_F_contig120.1454.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=756bp|location=Sequence derived from alignment at D-herbacea_F_contig120:56762..57325+ (Desmarestia herbacea DmunF female)
ATGCGACTCCGGCCCCCTATCGGCGAGTATCGTCCTCGTCTTCTGTCACT
GGGCTCCGCGTGCATACTCGCCACCGCCCTACCCTCCAGTGTCCCTTGCC
CTCTTCTTCATGAAAATACCAACCTCCTCTTATTTGCACCTCTGGTCCTA
GTCTTAGAAAAGAAAACTCTCGCTCTGGATGGGCTCAACCAGGCCCTATC
CAGCCCGTCGACGACGACGGTCTTCATCCCATCCTTGTCACCGAATCCGG
CCGATTCACCGGCGCACACTCCCTCTATCAAGGTTGTGAGCGTCGGGCTT
TCGGCGACGATGTCGATTTGCCTCCGCGTACACCCACACCCAAACGCACT
CGAAGTGCTTTACCGCTGGTTATCTTGAATGCGACTCCGGCCCCCTATCG
GCGAGTATCGTCCTCGTCTTCTGTCACTGGGCTCCGCGTGCATACTCGCC
ACCGCCCTACCCTCCAGTGTCCCTTGCCCTCTTCTTCATGAAAATACCAA
CCTCCTCTTATTTGCACCTCTGGTCCTAGTCTTAGAAAAGAAAACTCTCG
CTCTGGATGGGCTCAACCAGGCCCTATCCAGCCCGTCGACGACGACGGTC
TTCATCCCATCCTTGTCACCGAATCCGGCCGATTCACCGGCGCACACTCC
CTCTATCAAGGTTGTGAGCGTCGGGCTTTCGGCGACGATGTCGATTTGCC
TCCGCGTACACCCACACCCAAACGCACTCGAAGTGCTTTACCGCTGGTTA
TCTTGA
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