mRNA_D-herbacea_F_contig120.1453.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig120.1453.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI) HSP 1 Score: 171 bits (434), Expect = 3.180e-43 Identity = 106/232 (45.69%), Postives = 140/232 (60.34%), Query Frame = 3
Query: 1068 LSAVSTAWATCDQLR-AIPNPLTEDMTITMSGDAVECPIDDNNEMEQFVIDGGILTLTGESKTTFVNMRFQVADGAGLIFDFERTTFGPSNDYDRQDEYGIVYMLEVLEGGTAEFTGNLRVEELGNMRSVFYN--AGEIEFKGTARFLDIRTSVLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFNGNSGAGFGNFNDGKAVFRGDAIFKDNNCDEN 1754
L A S+ A+CD LR A+ +PLT D T+ +SGDA +CPI ++NE+E+F ++GG LTLTG S T F N++F + D AGLIFD++ T FGP+ Y+++D +G YM++VL GG+ EF G + L NMRSVFYN G IEF A F DI T+V R N XXXXXX SF+G+SG GF N + G A+FRG A+F N CDE+
Sbjct: 12 LWATSSVRASCDDLRTALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYEQEDSFGG-YMVQVLSGGSVEFLGEMAATGLANMRSVFYNEAGGNIEFADNAVFDDIGTNVFRSNLGRLRFYGDATFTNNIYLAIDNEGGSVRIXXXXXXVENGRSFDGHSGGGFSNTDGGTAIFRGPALFSSNACDES 241
BLAST of mRNA_D-herbacea_F_contig120.1453.1 vs. uniprot
Match: A0A6H5J6U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.150e-19 Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 3
Query: 1092 ATCDQLR-AIPNPLTEDMTITMSGDAVECPIDDNNEMEQFVIDGGILTLTGESKTTFVNMRFQVADGAGLIFDFERTTFGPSNDYDR 1349
A+CD LR A+ +PLT D T+ +SGDA +CPI ++NE+E+F ++GG LTLTG S T F N++F + D AGLIFD++ T FGP+ Y R
Sbjct: 6 ASCDDLRSALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYVR 91 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig120.1453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig120.1453.1 >prot_D-herbacea_F_contig120.1453.1 ID=prot_D-herbacea_F_contig120.1453.1|Name=mRNA_D-herbacea_F_contig120.1453.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=378bp MKTYGALCLLSAVSTAWATCDQLRAIPNPLTEDMTITMSGDAVECPIDDNback to top mRNA from alignment at D-herbacea_F_contig120:7279..46771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig120.1453.1 ID=mRNA_D-herbacea_F_contig120.1453.1|Name=mRNA_D-herbacea_F_contig120.1453.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=39493bp|location=Sequence derived from alignment at D-herbacea_F_contig120:7279..46771+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig120:7279..46771+ >mRNA_D-herbacea_F_contig120.1453.1 ID=mRNA_D-herbacea_F_contig120.1453.1|Name=mRNA_D-herbacea_F_contig120.1453.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2268bp|location=Sequence derived from alignment at D-herbacea_F_contig120:7279..46771+ (Desmarestia herbacea DmunF female)back to top |