mRNA_D-herbacea_F_contig12.1362.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig12.1362.1
Unique NamemRNA_D-herbacea_F_contig12.1362.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig12.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig12contigD-herbacea_F_contig12:49314..49915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig12.1362.1prot_D-herbacea_F_contig12.1362.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig12 49354..49662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.2633035-UTR-D-herbacea_F_contig12:49313..493531622927583.2633035-UTR-D-herbacea_F_contig12:49313..49353Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig12 49314..49353 +
1690790244.250627-UTR-D-herbacea_F_contig12:49313..493531690790244.250627-UTR-D-herbacea_F_contig12:49313..49353Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig12 49314..49353 +
1622927583.292061-UTR-D-herbacea_F_contig12:49662..499151622927583.292061-UTR-D-herbacea_F_contig12:49662..49915Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig12 49663..49915 +
1690790244.2785168-UTR-D-herbacea_F_contig12:49662..499151690790244.2785168-UTR-D-herbacea_F_contig12:49662..49915Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig12 49663..49915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.278915-CDS-D-herbacea_F_contig12:49353..496621622927583.278915-CDS-D-herbacea_F_contig12:49353..49662Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig12 49354..49662 +
1690790244.2690876-CDS-D-herbacea_F_contig12:49353..496621690790244.2690876-CDS-D-herbacea_F_contig12:49353..49662Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig12 49354..49662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig12.1362.1

>prot_D-herbacea_F_contig12.1362.1 ID=prot_D-herbacea_F_contig12.1362.1|Name=mRNA_D-herbacea_F_contig12.1362.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=103bp
MMHQIQQRHVTYIPRVRCSYGFGPLSLGRQLISVIKNNRNSLPPPALLTL
SAMLPRDSDRSCSLLLYSLPGTYYTKNRKGHRKGHRRKKKTYTSKHNAAC
RL*
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mRNA from alignment at D-herbacea_F_contig12:49314..49915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig12.1362.1 ID=mRNA_D-herbacea_F_contig12.1362.1|Name=mRNA_D-herbacea_F_contig12.1362.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=602bp|location=Sequence derived from alignment at D-herbacea_F_contig12:49314..49915+ (Desmarestia herbacea DmunF female)
CGCCCATTCAACAAAAACACGATGAGATGCAACCACGACGATGATGCATC
AAATACAACAACGTCACGTCACGTATATCCCACGCGTAAGGTGTTCGTAT
GGATTTGGACCACTATCCCTCGGACGACAATTAATTTCGGTAATAAAAAA
CAACAGAAACAGCCTCCCCCCTCCCGCTCTTCTTACTCTGTCTGCCATGC
TCCCTCGCGACAGTGACAGAAGTTGCTCTTTACTCCTTTACTCCTTACCT
GGTACGTATTATACCAAAAACAGAAAGGGCCATAGAAAGGGCCATAGAAG
AAAAAAAAAAACGTACACGTCGAAACACAACGCAGCATGTAGACTATAGA
GCTATACATGTGCGTGGTGATCACGAATCCTAAAAACAGACAACACCGGC
AAATTTTTGTCAACACCAAGAAGAGCATGTATAAGAACCCACAAAAACCA
AGCACGACGAGCGACACACACTCTCAGCATTAACAACGACCAAACAACCA
ATCGACCGACACACACAACACGAGCTCGTGCCACCCGCCCCGTCACTCCT
CCACCCTCATCAACACGCTCAATGGCAACGGCCATCCATCAATCAATCAA
CC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig12:49314..49915+

>mRNA_D-herbacea_F_contig12.1362.1 ID=mRNA_D-herbacea_F_contig12.1362.1|Name=mRNA_D-herbacea_F_contig12.1362.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=618bp|location=Sequence derived from alignment at D-herbacea_F_contig12:49314..49915+ (Desmarestia herbacea DmunF female)
ATGATGCATCAAATACAACAACGTCACGTCACGTATATCCCACGCGTAAG
GTGTTCGTATGGATTTGGACCACTATCCCTCGGACGACAATTAATTTCGG
TAATAAAAAACAACAGAAACAGCCTCCCCCCTCCCGCTCTTCTTACTCTG
TCTGCCATGCTCCCTCGCGACAGTGACAGAAGTTGCTCTTTACTCCTTTA
CTCCTTACCTGGTACGTATTATACCAAAAACAGAAAGGGCCATAGAAAGG
GCCATAGAAGAAAAAAAAAAACGTACACGTCGAAACACAACGCAGCATGT
AGACTATAGATGATGCATCAAATACAACAACGTCACGTCACGTATATCCC
ACGCGTAAGGTGTTCGTATGGATTTGGACCACTATCCCTCGGACGACAAT
TAATTTCGGTAATAAAAAACAACAGAAACAGCCTCCCCCCTCCCGCTCTT
CTTACTCTGTCTGCCATGCTCCCTCGCGACAGTGACAGAAGTTGCTCTTT
ACTCCTTTACTCCTTACCTGGTACGTATTATACCAAAAACAGAAAGGGCC
ATAGAAAGGGCCATAGAAGAAAAAAAAAAACGTACACGTCGAAACACAAC
GCAGCATGTAGACTATAG
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