mRNA_D-herbacea_F_contig1193.1356.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1193.1356.1
Unique NamemRNA_D-herbacea_F_contig1193.1356.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1193.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1193contigD-herbacea_F_contig1193:63055..63495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927582.0777664-CDS-D-herbacea_F_contig1193:63054..634951622927582.0777664-CDS-D-herbacea_F_contig1193:63054..63495Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1193 63055..63495 +
1690790243.6862268-CDS-D-herbacea_F_contig1193:63054..634951690790243.6862268-CDS-D-herbacea_F_contig1193:63054..63495Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1193 63055..63495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1193.1356.1prot_D-herbacea_F_contig1193.1356.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1193 63055..63495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1193.1356.1

>prot_D-herbacea_F_contig1193.1356.1 ID=prot_D-herbacea_F_contig1193.1356.1|Name=mRNA_D-herbacea_F_contig1193.1356.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=147bp
MGTLETRVIFSVGEREHRTAPLTTDEERAQSWQVIQDEINVSRLSSAEKP
VVAMRDDTPLVGPNARIVSGQLEPGLVLHACPMTKEGERLLHLEENTVAV
ITSGDGGGSAGPIGDDNSSTGPEIQSPLEMPDENLDSEEAREFGENL
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mRNA from alignment at D-herbacea_F_contig1193:63055..63495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1193.1356.1 ID=mRNA_D-herbacea_F_contig1193.1356.1|Name=mRNA_D-herbacea_F_contig1193.1356.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=441bp|location=Sequence derived from alignment at D-herbacea_F_contig1193:63055..63495+ (Desmarestia herbacea DmunF female)
ATGGGGACGCTAGAGACCCGGGTGATATTTTCGGTGGGGGAGAGAGAGCA
CCGGACAGCACCGCTCACAACCGACGAAGAAAGGGCTCAGTCTTGGCAGG
TGATCCAGGATGAAATTAATGTCTCGAGGTTAAGCTCTGCCGAAAAACCT
GTTGTTGCGATGCGGGATGATACTCCGCTTGTGGGACCAAACGCTAGGAT
AGTTAGTGGCCAGTTGGAACCAGGTCTAGTTCTACACGCGTGCCCAATGA
CTAAAGAAGGAGAGCGGTTGTTACACCTTGAGGAAAATACGGTAGCGGTA
ATCACCAGCGGTGATGGTGGCGGAAGTGCAGGTCCCATAGGCGATGATAA
CAGTAGTACCGGACCAGAGATACAGTCGCCCCTTGAAATGCCAGACGAGA
ATTTAGATAGCGAAGAGGCTCGGGAATTCGGTGAAAATTTA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1193:63055..63495+

>mRNA_D-herbacea_F_contig1193.1356.1 ID=mRNA_D-herbacea_F_contig1193.1356.1|Name=mRNA_D-herbacea_F_contig1193.1356.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=882bp|location=Sequence derived from alignment at D-herbacea_F_contig1193:63055..63495+ (Desmarestia herbacea DmunF female)
ATGGGGACGCTAGAGACCCGGGTGATATTTTCGGTGGGGGAGAGAGAGCA
CCGGACAGCACCGCTCACAACCGACGAAGAAAGGGCTCAGTCTTGGCAGG
TGATCCAGGATGAAATTAATGTCTCGAGGTTAAGCTCTGCCGAAAAACCT
GTTGTTGCGATGCGGGATGATACTCCGCTTGTGGGACCAAACGCTAGGAT
AGTTAGTGGCCAGTTGGAACCAGGTCTAGTTCTACACGCGTGCCCAATGA
CTAAAGAAGGAGAGCGGTTGTTACACCTTGAGGAAAATACGGTAGCGGTA
ATCACCAGCGGTGATGGTGGCGGAAGTGCAGGTCCCATAGGCGATGATAA
CAGTAGTACCGGACCAGAGATACAGTCGCCCCTTGAAATGCCAGACGAGA
ATTTAGATAGCGAAGAGGCTCGGGAATTCGGTGAAAATTTAATGGGGACG
CTAGAGACCCGGGTGATATTTTCGGTGGGGGAGAGAGAGCACCGGACAGC
ACCGCTCACAACCGACGAAGAAAGGGCTCAGTCTTGGCAGGTGATCCAGG
ATGAAATTAATGTCTCGAGGTTAAGCTCTGCCGAAAAACCTGTTGTTGCG
ATGCGGGATGATACTCCGCTTGTGGGACCAAACGCTAGGATAGTTAGTGG
CCAGTTGGAACCAGGTCTAGTTCTACACGCGTGCCCAATGACTAAAGAAG
GAGAGCGGTTGTTACACCTTGAGGAAAATACGGTAGCGGTAATCACCAGC
GGTGATGGTGGCGGAAGTGCAGGTCCCATAGGCGATGATAACAGTAGTAC
CGGACCAGAGATACAGTCGCCCCTTGAAATGCCAGACGAGAATTTAGATA
GCGAAGAGGCTCGGGAATTCGGTGAAAATTTA
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