mRNA_D-herbacea_F_contig1192.1353.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 8.160e-127 Identity = 197/344 (57.27%), Postives = 229/344 (66.57%), Query Frame = 1
Query: 1 CSNGLAGVESSKGYCCTNECSACGGKGCGRFGPM-----CCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIPDTCTDSLPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
CSNG GV+S + CC +C CGG C R G CC + I G CSE + C + D T + P + EG GC T+TDLYN R+ESDG + KGPI+ LD+ N L P + KWLLTAEL++ GAVFYC+G+ + GDCDELRIQSTG DFHEVR HGGS+YFEST+VTSWDTPNK PQ TYVGGRSFLNCVSE + E C GQ +N+ GECRMDIINSE+GYLGYFDSESYGLTWKVRGFC D SNP+VFDTTNVYG+++GSDIHH YYG Y+YGHQGGVW +N+MHDN QYGFDP
Sbjct: 12 CSNGFVGVQS-ENICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIM--------------------------DDVTGNTP---------------DAEGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDP 312
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 382 bits (981), Expect = 3.000e-119 Identity = 183/264 (69.32%), Postives = 207/264 (78.41%), Query Frame = 1
Query: 235 VMTIPDTCTDS--LPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
+M I +C D P+ RYA SSG A + EG GC TMTDLYN R E+DG + KGP+Y+LD+D P+ T WLL AELY+ G VFYCKGT GDC++LRIQSTGSDDFHEVRGHGGSLYFE T+VTSWDTPNKEPQETY GRSFLNCVSE + + CEG KN+ GECRMDIINSE+ YLGYFDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+ GSDIHH+YYG Y+YGHQGGVWT+NKMHDN QYGFDP
Sbjct: 414 LMEISSSCGDDEDRPSFRYAASSG-VAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 675
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 359 bits (921), Expect = 7.710e-117 Identity = 168/233 (72.10%), Postives = 187/233 (80.26%), Query Frame = 1
Query: 346 MTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWK--------VRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
MTDLYN R E DG + KGP+Y+LD+D P+ T WLL AELY+ G VFYCKGT GDC++LRIQSTGSDDFHEVRGHGGSLYFE T+VTSWDTPNKEPQETY GGRSFLNCVSE + + CEG KN+ GECRMDIINSE+ YLGYFDSESYG+TWK VRGFC D SNPEVFD TNVYGD++GSDIHH+YYG Y+YGHQGGVWT+NKMHDN QYGFDP
Sbjct: 1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 232
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 351 bits (900), Expect = 3.760e-112 Identity = 166/237 (70.04%), Postives = 190/237 (80.17%), Query Frame = 1
Query: 325 EGSGCGTMTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVR---------GFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQY 1005
E GC T+TDLYN R E+DG + KGP+Y+LD + APT+ T KWLL AELYV GA+FYC G++ GDCDELRIQSTG DD++EVRGHGGS+YF T+VTSWDTPNK+PQETY GGRSFLNCVSE + ETC+G KND GECRMDIINSEMGY+G+FDSESYGLTWKVR GFC D SNP+VF+TTNVYGDI SDIHHMYYG Y+YGHQGGVWT+N+MHDN QY
Sbjct: 18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY 253
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 340 bits (872), Expect = 2.660e-109 Identity = 151/203 (74.38%), Postives = 177/203 (87.19%), Query Frame = 1
Query: 409 ILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
+LD+ N +PT+ T KWLL +ELYV +GA+FYC G++ GDCDELRIQSTG DD++EVRGHGGS+YF T+VTSWDTPNK+PQETY GGRSFLNCVSE + ETC+G+ KND GECRMDIINSEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDI S+IHHMYYGMY+YGHQGGVWT+N+MHDN QYGFDP
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDP 203
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 314 bits (804), Expect = 4.920e-98 Identity = 143/232 (61.64%), Postives = 176/232 (75.86%), Query Frame = 1
Query: 325 EGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSE-FESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
+G GC T++DLY + + KGP+++LD ++ +D T TGKWLLTA+L+V GA YC+G V G+C ELRI+ST DF E+RGHGG+LYFE T+VTSWD ++PQETY GRSF+ CVSE ++TC N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC D SNP+VFD NVYGD+ GSDIHHMYYGMY++GHQGGVWT+N MHDN QYGFDP
Sbjct: 7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCA---INNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDP 235
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 281 bits (718), Expect = 1.150e-82 Identity = 155/342 (45.32%), Postives = 207/342 (60.53%), Query Frame = 1
Query: 58 CSACGGKGC----GRFGPMCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVS--------------SPTPVMTIPDTCTDSLPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDE-DNNIDLAPTAY--TGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPN-KEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
C CGG GC G CC IE +G CS T ++ CF+ D E + S S +PTP +P C D+ T++ + + + + GC T+TDLYN++ DG GP+++LD DN +D A + TG+WLLT+ + + + A + +G D GDCD LRI+STGS + E+ GHGG++YFE T VTSWDT KE + GRSF+ C+++++ + +C G D G CRMDII+S MG +GY SESYGLTWKVRG C + SN ++FD NVYGDI SDI+ MYYGMY+YGH+GGVWT+NKMHDN QYGFDP
Sbjct: 148 CGTCGGTGCSQRPGLTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPE--QTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGC-DTKATVQIDKDTAY------FKSGGCATLTDLYNAQ---DG---TGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSK-YWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLKLFDKRNVYGDIKNSDIYGMYYGMYSYGHEGGVWTNNKMHDNVQYGFDP 473
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 278 bits (712), Expect = 2.190e-80 Identity = 160/344 (46.51%), Postives = 197/344 (57.27%), Query Frame = 1
Query: 40 YCCTNECSACGGKGC-----GRFGPMCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIPDTCTDSLP-----TIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNI------DLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDE--TCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
YCC+ C CGG G G CC S I CS T + C + D ++G +PTP TI +S ++F G GC T+TD+YN++ S GP+Y+LD NNI +PT Y WLLT+ L + +G Y GT GD D LRIQST DDF E+RG GGSL F T VTSWDT E + Y GGRSF+NCV++F+ + +C G+ + GECRMDII+S MG +G+FD+ESYGLTWKVRG C D SN E+ D NVYGDI GS+I+ MYYGMY+YGHQGGVWTDN M DN YGFDP
Sbjct: 322 YCCSAGCGECGGXXXXXXXXGLTGADCCTSDIS---NLCSVTGAAPCIVDGD--------STG--PTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSF---SGGGCATLTDMYNTQSGS------GPLYVLDSSNNIVSGGGGSASPTGY---WLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDP 639
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 265 bits (677), Expect = 1.030e-79 Identity = 138/258 (53.49%), Postives = 169/258 (65.50%), Query Frame = 1
Query: 262 DSLPTIRYAESSG---WPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDN-NIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEF--ESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
D +IRYAES+ +A GC T+ ++ SR KGP+Y +D D+ N+ T+ TG WLLT ELYV +G G++ GD DELR+ ST ++ F +R HGGSL F ST V SWDT P E GRS+++ +SE + DETCEG KN GE RMDI +SE+GYLGY+DSESYGLTWKVRGFC DKSNPEVFD NVYG++ SDIHHM +G+YTYGHQ G W NKMHDN+ YGFDP
Sbjct: 41 DIAVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNVS---TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLST-NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDP 288
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 261 bits (668), Expect = 4.440e-77 Identity = 140/283 (49.47%), Postives = 178/283 (62.90%), Query Frame = 1
Query: 181 MFIAETLRASGFVSSPTPVMTIPDTCTDSLPTIRYAESSG--WPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEF--ESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
+ + T A+ +SP ++ PD +D +IRYA ++ + + GC T+ ++ SR K P+Y +D D+ D++ T TG WLLT ELYV +G GTD GD DELR+ ST S+ + +R HGGSL F T V SWDT P E GRS+++ VSE + DETCEG KN GE RMDI NSE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD NVYG++ SDIHH+ +G+YTYGHQ G W NKMHDN+ YGFDP
Sbjct: 19 LLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSG-DVSETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLST-SETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDP 292 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1192.1353.1 >prot_D-herbacea_F_contig1192.1353.1 ID=prot_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=313bp MCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIPback to top mRNA from alignment at D-herbacea_F_contig1192:5823..9139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1192.1353.1 ID=mRNA_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3317bp|location=Sequence derived from alignment at D-herbacea_F_contig1192:5823..9139+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1192:5823..9139+ >mRNA_D-herbacea_F_contig1192.1353.1 ID=mRNA_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1878bp|location=Sequence derived from alignment at D-herbacea_F_contig1192:5823..9139+ (Desmarestia herbacea DmunF female)back to top |