mRNA_D-herbacea_F_contig1192.1353.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1192.1353.1
Unique NamemRNA_D-herbacea_F_contig1192.1353.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 8.160e-127
Identity = 197/344 (57.27%), Postives = 229/344 (66.57%), Query Frame = 1
Query:    1 CSNGLAGVESSKGYCCTNECSACGGKGCGRFGPM-----CCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIPDTCTDSLPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            CSNG  GV+S +  CC  +C  CGG  C R G       CC + I   G  CSE   + C +                          D  T + P               + EG GC T+TDLYN R+ESDG + KGPI+ LD+  N  L P   + KWLLTAEL++  GAVFYC+G+ + GDCDELRIQSTG  DFHEVR HGGS+YFEST+VTSWDTPNK PQ TYVGGRSFLNCVSE  + E C GQ +N+ GECRMDIINSE+GYLGYFDSESYGLTWKVRGFC D SNP+VFDTTNVYG+++GSDIHH YYG Y+YGHQGGVW +N+MHDN QYGFDP
Sbjct:   12 CSNGFVGVQS-ENICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIM--------------------------DDVTGNTP---------------DAEGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDP 312          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 3.000e-119
Identity = 183/264 (69.32%), Postives = 207/264 (78.41%), Query Frame = 1
Query:  235 VMTIPDTCTDS--LPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            +M I  +C D    P+ RYA SSG  A  +  EG GC TMTDLYN R  E+DG + KGP+Y+LD+D      P+  T  WLL AELY+  G VFYCKGT   GDC++LRIQSTGSDDFHEVRGHGGSLYFE T+VTSWDTPNKEPQETY  GRSFLNCVSE  + + CEG  KN+ GECRMDIINSE+ YLGYFDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+ GSDIHH+YYG Y+YGHQGGVWT+NKMHDN QYGFDP
Sbjct:  414 LMEISSSCGDDEDRPSFRYAASSG-VAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 675          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 7.710e-117
Identity = 168/233 (72.10%), Postives = 187/233 (80.26%), Query Frame = 1
Query:  346 MTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWK--------VRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            MTDLYN R  E DG + KGP+Y+LD+D      P+  T  WLL AELY+  G VFYCKGT   GDC++LRIQSTGSDDFHEVRGHGGSLYFE T+VTSWDTPNKEPQETY GGRSFLNCVSE  + + CEG  KN+ GECRMDIINSE+ YLGYFDSESYG+TWK        VRGFC D SNPEVFD TNVYGD++GSDIHH+YYG Y+YGHQGGVWT+NKMHDN QYGFDP
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 232          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 3.760e-112
Identity = 166/237 (70.04%), Postives = 190/237 (80.17%), Query Frame = 1
Query:  325 EGSGCGTMTDLYNSR-VESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVR---------GFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQY 1005
            E  GC T+TDLYN R  E+DG + KGP+Y+LD   +   APT+ T KWLL AELYV  GA+FYC G++  GDCDELRIQSTG DD++EVRGHGGS+YF  T+VTSWDTPNK+PQETY GGRSFLNCVSE  + ETC+G  KND GECRMDIINSEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDI  SDIHHMYYG Y+YGHQGGVWT+N+MHDN QY
Sbjct:   18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY 253          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 2.660e-109
Identity = 151/203 (74.38%), Postives = 177/203 (87.19%), Query Frame = 1
Query:  409 ILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            +LD+  N   +PT+ T KWLL +ELYV +GA+FYC G++  GDCDELRIQSTG DD++EVRGHGGS+YF  T+VTSWDTPNK+PQETY GGRSFLNCVSE  + ETC+G+ KND GECRMDIINSEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDI  S+IHHMYYGMY+YGHQGGVWT+N+MHDN QYGFDP
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDP 203          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 4.920e-98
Identity = 143/232 (61.64%), Postives = 176/232 (75.86%), Query Frame = 1
Query:  325 EGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSE-FESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            +G GC T++DLY  +   +    KGP+++LD ++ +D   T  TGKWLLTA+L+V  GA  YC+G  V G+C ELRI+ST   DF E+RGHGG+LYFE T+VTSWD   ++PQETY  GRSF+ CVSE    ++TC     N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC D SNP+VFD  NVYGD+ GSDIHHMYYGMY++GHQGGVWT+N MHDN QYGFDP
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCA---INNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDP 235          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.150e-82
Identity = 155/342 (45.32%), Postives = 207/342 (60.53%), Query Frame = 1
Query:   58 CSACGGKGC----GRFGPMCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVS--------------SPTPVMTIPDTCTDSLPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDE-DNNIDLAPTAY--TGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPN-KEPQETYVGGRSFLNCVSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            C  CGG GC    G     CC   IE +G  CS T ++ CF+  D    E  + S   S              +PTP   +P  C D+  T++  + + +       +  GC T+TDLYN++   DG    GP+++LD  DN +D A  +   TG+WLLT+ + + + A  + +G D  GDCD LRI+STGS  + E+ GHGG++YFE T VTSWDT   KE +     GRSF+ C+++++ + +C G    D G CRMDII+S MG +GY  SESYGLTWKVRG C + SN ++FD  NVYGDI  SDI+ MYYGMY+YGH+GGVWT+NKMHDN QYGFDP
Sbjct:  148 CGTCGGTGCSQRPGLTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPE--QTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGC-DTKATVQIDKDTAY------FKSGGCATLTDLYNAQ---DG---TGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSK-YWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLKLFDKRNVYGDIKNSDIYGMYYGMYSYGHEGGVWTNNKMHDNVQYGFDP 473          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 2.190e-80
Identity = 160/344 (46.51%), Postives = 197/344 (57.27%), Query Frame = 1
Query:   40 YCCTNECSACGGKGC-----GRFGPMCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIPDTCTDSLP-----TIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNI------DLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEFESDE--TCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            YCC+  C  CGG        G  G  CC S I      CS T  + C +  D        ++G   +PTP                  TI    +S   ++F    G GC T+TD+YN++  S      GP+Y+LD  NNI        +PT Y   WLLT+ L + +G   Y  GT   GD D LRIQST  DDF E+RG GGSL F  T VTSWDT   E +  Y GGRSF+NCV++F+  +  +C G+   + GECRMDII+S MG +G+FD+ESYGLTWKVRG C D SN E+ D  NVYGDI GS+I+ MYYGMY+YGHQGGVWTDN M DN  YGFDP
Sbjct:  322 YCCSAGCGECGGXXXXXXXXGLTGADCCTSDIS---NLCSVTGAAPCIVDGD--------STG--PTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSF---SGGGCATLTDMYNTQSGS------GPLYVLDSSNNIVSGGGGSASPTGY---WLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDP 639          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.030e-79
Identity = 138/258 (53.49%), Postives = 169/258 (65.50%), Query Frame = 1
Query:  262 DSLPTIRYAESSG---WPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDN-NIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEF--ESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            D   +IRYAES+      +A       GC T+  ++ SR        KGP+Y +D D+ N+    T+ TG WLLT ELYV +G      G++  GD DELR+ ST ++ F  +R HGGSL F ST V SWDT    P E    GRS+++ +SE   + DETCEG  KN  GE RMDI +SE+GYLGY+DSESYGLTWKVRGFC DKSNPEVFD  NVYG++  SDIHHM +G+YTYGHQ G W  NKMHDN+ YGFDP
Sbjct:   41 DIAVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNVS---TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLST-NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDP 288          
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 4.440e-77
Identity = 140/283 (49.47%), Postives = 178/283 (62.90%), Query Frame = 1
Query:  181 MFIAETLRASGFVSSPTPVMTIPDTCTDSLPTIRYAESSG--WPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKGPIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDELRIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNCVSEF--ESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNAQYGFDP 1017
            +  + T  A+   +SP   ++ PD  +D   +IRYA ++   +  +       GC T+  ++ SR        K P+Y +D D+  D++ T  TG WLLT ELYV +G      GTD  GD DELR+ ST S+ +  +R HGGSL F  T V SWDT    P E    GRS+++ VSE   + DETCEG  KN  GE RMDI NSE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD  NVYG++  SDIHH+ +G+YTYGHQ G W  NKMHDN+ YGFDP
Sbjct:   19 LLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSG-DVSETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLST-SETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDP 292          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1192.1353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI8.160e-12757.27Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI3.000e-11969.32Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE7.710e-11772.10MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JGU8_9PHAE3.760e-11270.04MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI2.660e-10974.38Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI4.920e-9861.64Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRN0_ECTSI1.150e-8245.32Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI2.190e-8046.51Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FXE5_ECTSI1.030e-7953.49Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI4.440e-7749.47Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1192contigD-herbacea_F_contig1192:5823..9139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.0
Seed ortholog evalue1.7e-104
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons7
Model size1682
Cds size939
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927581.699788-UTR-D-herbacea_F_contig1192:5822..59211622927581.699788-UTR-D-herbacea_F_contig1192:5822..5921Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 5823..5921 +
1690790243.5395496-UTR-D-herbacea_F_contig1192:5822..59211690790243.5395496-UTR-D-herbacea_F_contig1192:5822..5921Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 5823..5921 +
1622927581.8462348-UTR-D-herbacea_F_contig1192:7675..78341622927581.8462348-UTR-D-herbacea_F_contig1192:7675..7834Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 7676..7834 +
1690790243.5772479-UTR-D-herbacea_F_contig1192:7675..78341690790243.5772479-UTR-D-herbacea_F_contig1192:7675..7834Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 7676..7834 +
1622927581.863028-UTR-D-herbacea_F_contig1192:8021..81861622927581.863028-UTR-D-herbacea_F_contig1192:8021..8186Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8022..8186 +
1690790243.584709-UTR-D-herbacea_F_contig1192:8021..81861690790243.584709-UTR-D-herbacea_F_contig1192:8021..8186Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8022..8186 +
1622927581.8739603-UTR-D-herbacea_F_contig1192:8414..85581622927581.8739603-UTR-D-herbacea_F_contig1192:8414..8558Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8415..8558 +
1690790243.5970025-UTR-D-herbacea_F_contig1192:8414..85581690790243.5970025-UTR-D-herbacea_F_contig1192:8414..8558Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8415..8558 +
1622927581.8859756-UTR-D-herbacea_F_contig1192:8963..91391622927581.8859756-UTR-D-herbacea_F_contig1192:8963..9139Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8964..9139 +
1690790243.607302-UTR-D-herbacea_F_contig1192:8963..91391690790243.607302-UTR-D-herbacea_F_contig1192:8963..9139Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1192 8964..9139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927581.712853-CDS-D-herbacea_F_contig1192:5921..60001622927581.712853-CDS-D-herbacea_F_contig1192:5921..6000Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 5922..6000 +
1690790243.548563-CDS-D-herbacea_F_contig1192:5921..60001690790243.548563-CDS-D-herbacea_F_contig1192:5921..6000Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 5922..6000 +
1622927581.7237952-CDS-D-herbacea_F_contig1192:6040..60791622927581.7237952-CDS-D-herbacea_F_contig1192:6040..6079Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6041..6079 +
1690790243.5556877-CDS-D-herbacea_F_contig1192:6040..60791690790243.5556877-CDS-D-herbacea_F_contig1192:6040..6079Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6041..6079 +
1622927581.741051-CDS-D-herbacea_F_contig1192:6596..66981622927581.741051-CDS-D-herbacea_F_contig1192:6596..6698Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6597..6698 +
1690790243.5629387-CDS-D-herbacea_F_contig1192:6596..66981690790243.5629387-CDS-D-herbacea_F_contig1192:6596..6698Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6597..6698 +
1622927581.830922-CDS-D-herbacea_F_contig1192:6956..76751622927581.830922-CDS-D-herbacea_F_contig1192:6956..7675Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6957..7675 +
1690790243.5701747-CDS-D-herbacea_F_contig1192:6956..76751690790243.5701747-CDS-D-herbacea_F_contig1192:6956..7675Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1192 6957..7675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1192.1353.1prot_D-herbacea_F_contig1192.1353.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1192 5922..7675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1192.1353.1

>prot_D-herbacea_F_contig1192.1353.1 ID=prot_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=313bp
MCCNSAIEATGRTCSETEESSCFIVSDMFIAETLRASGFVSSPTPVMTIP
DTCTDSLPTIRYAESSGWPAAFVNMEGSGCGTMTDLYNSRVESDGWTPKG
PIYILDEDNNIDLAPTAYTGKWLLTAELYVREGAVFYCKGTDVDGDCDEL
RIQSTGSDDFHEVRGHGGSLYFESTLVTSWDTPNKEPQETYVGGRSFLNC
VSEFESDETCEGQPKNDFGECRMDIINSEMGYLGYFDSESYGLTWKVRGF
CVDKSNPEVFDTTNVYGDIMGSDIHHMYYGMYTYGHQGGVWTDNKMHDNA
QYGFDPTTTRTT*
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mRNA from alignment at D-herbacea_F_contig1192:5823..9139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1192.1353.1 ID=mRNA_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3317bp|location=Sequence derived from alignment at D-herbacea_F_contig1192:5823..9139+ (Desmarestia herbacea DmunF female)
TGCAGCAATGGCCTCGCTGGCGTCGAGTCTAGCAAAGGCTACTGCTGCAC GAACGAATGCTCGGCGTGCGGTGGCAAGGGCTGCGGGCGCTTCGGCCCCA TGTGCTGCAACAGTGCCATCGAAGCGACGGGCAGGACGTGCAGCGAAACG GAAGAGTCCTCTTGCTTCATCGTCAGCGGTATTTAACAAATCGATGAAAG CGGTTCCTGCGTCGGGAGATATGTTTATTGCCGAAACGTTGCGCGCATCT GGCTTCGGTGCACCGATCGTCTGGGCTTCTACCTGACCCACTGAAACAAA CGTTATCCTCACCAGTCTTTTTTCGCGGAGTGTTTTTCGATTGCTCGAGC GTAATCAAGACTGGAATGGACACTGTGAGCTCGCCGCTCGCCGATCACCG ACCACCACCGTAGAAGAAGCACACCAACAGCAGCGCTGGCGACGGGGTTA TATTTCCCTCGTCGCATGATTGACCTCAACCGGCGAACAATCACAATTTC GGCAGAGGCTGGATTTTAATGTTCATATGACTTGGTCCCGAAACCTACTA CTAGCCTACAGGCATCACATCAACACACGAACTAAACATACGAACCAAAA GCGATGGTTCAACCAACGACAACTCTTCTAAGAGTAAATAAAAGCACCTG TGTGATACGATATTTACCCGAGAAACCCGCCCAACTCTATGTGCTTAAGT ACTAGTTAATAATAATAGTTAATATTCGTCTCATCTTCCATCGCCTTTAC TTTTTTTGCTGTTCCCCATGCCAGTTTCTAGCCCCACCCCCGTCATGACG ATACCGGACACCTGCACCGATTCCCTTCCAACTATCCGCTACGCGGAATC CTCGGGGTGGCCGGCCGCCTTTGTAAGTTCTTCTTCTCTTTGCGCCTCGA TAATGGCTGTCAACACGAGTATTCTTCGTAATCCACGTATGAAACAGTGA ACCTTATGGGCGTTCGCTGTCACGTGGGAGTCAGGCTGACCCGGTAGATA GGAAAACCTGTAGGGCAAGGAATGGATTGAATGGCAGGTTGAACTCTGAT GGCTGGTTATAATCACGCTCGGCTGTATAACTAATTTCTCCATGCTGGCT ATTGACCCTCGGCGTGGCCTTCAAACGCTTGCAGACATGGAGGGCTCCGG GTGCGGCACCATGACTGACCTCTACAACTCTCGCGTCGAAAGCGATGGCT GGACTCCGAAGGGGCCCATCTACATTCTCGATGAAGATAACAACATCGAC TTGGCGCCGACAGCGTACACGGGGAAGTGGCTGTTAACGGCGGAGCTTTA CGTCCGAGAGGGTGCCGTCTTCTACTGCAAAGGTACCGACGTCGACGGAG ACTGCGACGAGCTCCGCATCCAGTCGACCGGCTCGGACGATTTCCACGAG GTCAGGGGCCACGGCGGCAGCCTGTACTTCGAGAGCACCCTTGTGACATC GTGGGACACGCCCAACAAGGAGCCGCAAGAAACGTACGTGGGTGGCCGTT CGTTCCTCAATTGCGTCTCCGAGTTCGAGTCGGACGAAACCTGCGAGGGG CAACCAAAGAATGACTTCGGCGAGTGCCGTATGGACATAATCAACTCTGA GATGGGCTATCTGGGATACTTCGACTCCGAGTCGTACGGCCTGACGTGGA AGGTCCGTGGATTCTGCGTTGACAAGAGCAACCCCGAGGTGTTCGACACG ACCAACGTGTACGGCGACATCATGGGCTCCGACATCCATCACATGTACTA CGGTATGTACACGTACGGCCACCAGGGTGGTGTGTGGACCGATAACAAGA TGCACGACAATGCTCAGTACGGCTTTGACCCCACGACGACTCGGACTACC TGACCATCGCGAGAAATGAGGTCTACGGGAACGTAAACCACGGGATTATC GCCTCCAAGCGCTGCAACAACGTCGAGATTTACGATAATGAGGTGTACGA TGGTGGGGAACAGGCTGCGGGTATCTTCCTCCACCGTAGCTCGGACAGCG CCAAGGTCTACAGTGAGTAATTGGGCTAAATCAACTCGCTTTCAAGGTGT CTAAGCCTAGAGTGTTCAGATGTATTTAGCTGGGGTTCAATCGGCCGTGT TGCGTGGGTGCCCGTGGTCCCTGTAGACTCCGAAGCGTTCTAATCGTGTT TTCACCCCCAAGTCTTTACCAATGTACCACGATTTGTGCCTCTGGGCAGA CAACAACGTGCACGATATGCAAGACGCCGGCATTGCCATCCTGGAGTCTT TCGACGCCGAGATCTACGAGAATACCTTCACCGACGTGAAGTACGGTATC CGCATCAGTCTTGGAGGCGGCAACAACTACGTTCATGACAACACCTTCGA CACTTGCTCCAAATGTAAGTTTTTACCAGCGTAATGACATAGTTTTCTTG GGGATATAACATTCCGTGCATTATCCGTCCATTTCTTCCTTATATACCAA GTACTCCCATGTTTCTTGGTAAGAAAAACCCATTCAAGTTGTAGATTACC CTCTCGTGGAATGCTCTGATATATGGTCGTATCTCTGGGATTTTCTCCGG CTTATAGCAAAACGTTTTTGACTCGTTGACCCGTCTCTTCAGACGGCCTC TTCACGTACATGGGGTCCGACGCACCAGAGCAGACTGCCGACGGGCGACC GGACGAGAACAACTTTGAAAACAACAAAATTCTCAACACAGCGGAAGGCG TGAAGATCAAGGAAGCCGACAACACCGTTATCTCGGGTGAGTTTATTGCT TCCTGAAATTTGTTGATATTCTTTCGTGGGAAGCCCTCTTCTCACGACAC CGTCGCCCCTTTCTTTCACTTTTCGGTACAGCTTTACTCGACAGTTCTTA ACCGCACGTACTTCTACTTTCGTGGTACGTCTAGAGTACACCTTACTACT GGCCCCACCCAGAGTACTGCCGTAAATCAGATGATAGGGACAAACGGGAA GTTTTGGGGAAGACGTTCTTTATTGGTCAGAACTAAGCATAAAAGGGGCA TCACGGGAAGAGGGACCGATCCGTTTCACGACCTTAAAGCTGAAAACTCA CACATCCAACGTAAACCACCGCGGTTTATTGTCCTTGCAACTCTACTCTC CACTCTTCGCACGTGTGCCTTGTCTGCTTTCCCCTCTGCAGGCAACACCT TTACTGGTACGCAGGAACTCACGTTCCACGACGCGCAGGCGACCTCCTGG TTCGACAACGATGTGCAAGGATCACCGTGCCTGAATATTGTCCTGGAGGA CGATGGCTCTGATATTCCCGACAGTAGCTTCACAAGCGACTCGAACGGCT TGCCCGATTCCATCTGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1192:5823..9139+

>mRNA_D-herbacea_F_contig1192.1353.1 ID=mRNA_D-herbacea_F_contig1192.1353.1|Name=mRNA_D-herbacea_F_contig1192.1353.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1878bp|location=Sequence derived from alignment at D-herbacea_F_contig1192:5823..9139+ (Desmarestia herbacea DmunF female)
ATGTGCTGCAACAGTGCCATCGAAGCGACGGGCAGGACGTGCAGCGAAAC
GGAAGAGTCCTCTTGCTTCATCGTCAGCGATGTGCTGCAACAGTGCCATC
GAAGCGACGGGCAGGACGTGCAGCGAAACGGAAGAGTCCTCTTGCTTCAT
CGTCAGCGATATGTTTATTGCCGAAACGTTGCGCGCATCTGGCTTCGATA
TGTTTATTGCCGAAACGTTGCGCGCATCTGGCTTCGTTTCTAGCCCCACC
CCCGTCATGACGATACCGGACACCTGCACCGATTCCCTTCCAACTATCCG
CTACGCGGAATCCTCGGGGTGGCCGGCCGCCTTTGTAATTTCTAGCCCCA
CCCCCGTCATGACGATACCGGACACCTGCACCGATTCCCTTCCAACTATC
CGCTACGCGGAATCCTCGGGGTGGCCGGCCGCCTTTGTAAACATGGAGGG
CTCCGGGTGCGGCACCATGACTGACCTCTACAACTCTCGCGTCGAAAGCG
ATGGCTGGACTCCGAAGGGGCCCATCTACATTCTCGATGAAGATAACAAC
ATCGACTTGGCGCCGACAGCGTACACGGGGAAGTGGCTGTTAACGGCGGA
GCTTTACGTCCGAGAGGGTGCCGTCTTCTACTGCAAAGGTACCGACGTCG
ACGGAGACTGCGACGAGCTCCGCATCCAGTCGACCGGCTCGGACGATTTC
CACGAGGTCAGGGGCCACGGCGGCAGCCTGTACTTCGAGAGCACCCTTGT
GACATCGTGGGACACGCCCAACAAGGAGCCGCAAGAAACGTACGTGGGTG
GCCGTTCGTTCCTCAATTGCGTCTCCGAGTTCGAGTCGGACGAAACCTGC
GAGGGGCAACCAAAGAATGACTTCGGCGAGTGCCGTATGGACATAATCAA
CTCTGAGATGGGCTATCTGGGATACTTCGACTCCGAGTCGTACGGCCTGA
CGTGGAAGGTCCGTGGATTCTGCGTTGACAAGAGCAACCCCGAGGTGTTC
GACACGACCAACGTGTACGGCGACATCATGGGCTCCGACATCCATCACAT
GTACTACGGTATGTACACGTACGGCCACCAGGGTGGTGTGTGGACCGATA
ACAAGATGCACGACAATGCTCAGTACGGCTTTGACCCCACGACGACTCGG
ACTACCTGAACATGGAGGGCTCCGGGTGCGGCACCATGACTGACCTCTAC
AACTCTCGCGTCGAAAGCGATGGCTGGACTCCGAAGGGGCCCATCTACAT
TCTCGATGAAGATAACAACATCGACTTGGCGCCGACAGCGTACACGGGGA
AGTGGCTGTTAACGGCGGAGCTTTACGTCCGAGAGGGTGCCGTCTTCTAC
TGCAAAGGTACCGACGTCGACGGAGACTGCGACGAGCTCCGCATCCAGTC
GACCGGCTCGGACGATTTCCACGAGGTCAGGGGCCACGGCGGCAGCCTGT
ACTTCGAGAGCACCCTTGTGACATCGTGGGACACGCCCAACAAGGAGCCG
CAAGAAACGTACGTGGGTGGCCGTTCGTTCCTCAATTGCGTCTCCGAGTT
CGAGTCGGACGAAACCTGCGAGGGGCAACCAAAGAATGACTTCGGCGAGT
GCCGTATGGACATAATCAACTCTGAGATGGGCTATCTGGGATACTTCGAC
TCCGAGTCGTACGGCCTGACGTGGAAGGTCCGTGGATTCTGCGTTGACAA
GAGCAACCCCGAGGTGTTCGACACGACCAACGTGTACGGCGACATCATGG
GCTCCGACATCCATCACATGTACTACGGTATGTACACGTACGGCCACCAG
GGTGGTGTGTGGACCGATAACAAGATGCACGACAATGCTCAGTACGGCTT
TGACCCCACGACGACTCGGACTACCTGA
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