mRNA_D-herbacea_F_contig119.1345.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig119.1345.1
Unique NamemRNA_D-herbacea_F_contig119.1345.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 249 bits (637), Expect = 2.610e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   25 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (642), Expect = 4.310e-83
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 1 
Query:    1 RPASHRSHT--MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            RP  H+  T  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   63 RPTFHQQQTVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (635), Expect = 4.310e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A673CCY6_9TELE (Histone H3 n=3 Tax=Bilateria TaxID=33213 RepID=A0A673CCY6_9TELE)

HSP 1 Score: 248 bits (632), Expect = 1.560e-82
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 1 
Query:   10 SHRSHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            SH   TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 SHEKCTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 143
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 247 bits (631), Expect = 1.760e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.980e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A3B4AB48_9GOBI (Histone H3 n=2 Tax=Bilateria TaxID=33213 RepID=A0A3B4AB48_9GOBI)

HSP 1 Score: 247 bits (631), Expect = 2.010e-82
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:   19 SHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            SH MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 SHKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A4W5P680_9TELE (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A4W5P680_9TELE)

HSP 1 Score: 246 bits (629), Expect = 4.050e-82
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   22 HTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            H MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 247 bits (630), Expect = 4.570e-82
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   13 HRSHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            H + TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   14 HLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
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BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 246 bits (627), Expect = 7.910e-82
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:   19 SHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            S TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK2.610e-8398.54Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
K0S7I6_THAOC4.310e-8394.56Histone domain-containing protein n=8 Tax=Bacillar... [more]
W4GZ05_9STRA4.310e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A673CCY6_9TELE1.560e-8294.37Histone H3 n=3 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A1Z5K8H0_FISSO1.760e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.980e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A3B4AB48_9GOBI2.010e-8295.68Histone H3 n=2 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A4W5P680_9TELE4.050e-8295.65Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A164UB18_9CRUS4.570e-8294.33Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
F7BPK5_MONDO7.910e-8294.96Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig119contigD-herbacea_F_contig119:798750..799187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size438
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927581.3393002-CDS-D-herbacea_F_contig119:798749..7991601622927581.3393002-CDS-D-herbacea_F_contig119:798749..799160Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 798750..799160 -
1690790243.4385657-CDS-D-herbacea_F_contig119:798749..7991601690790243.4385657-CDS-D-herbacea_F_contig119:798749..799160Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 798750..799160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927581.3534474-UTR-D-herbacea_F_contig119:799160..7991871622927581.3534474-UTR-D-herbacea_F_contig119:799160..799187Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 799161..799187 -
1690790243.4496965-UTR-D-herbacea_F_contig119:799160..7991871690790243.4496965-UTR-D-herbacea_F_contig119:799160..799187Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 799161..799187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig119.1345.1prot_D-herbacea_F_contig119.1345.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig119 798750..799160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig119.1345.1

>prot_D-herbacea_F_contig119.1345.1 ID=prot_D-herbacea_F_contig119.1345.1|Name=mRNA_D-herbacea_F_contig119.1345.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at D-herbacea_F_contig119:798750..799187-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig119.1345.1 ID=mRNA_D-herbacea_F_contig119.1345.1|Name=mRNA_D-herbacea_F_contig119.1345.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=438bp|location=Sequence derived from alignment at D-herbacea_F_contig119:798750..799187- (Desmarestia herbacea DmunF female)
CGACCTGCCTCCCATCGATCGCACACAATGGCTCGCACGAAGCAGACTGC
CCGTAAGTCCACCGGAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGG
CCGCCCGTAAGTCCGCGCCCGCAACCGGAGGCGTGAAGAAGCCCCACCGC
TACAGGCCTGGAACTGTGGCCCTGCGCGAGATCCGCCGCTACCAGAAGTC
CACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGTCTCGTGCGCGAGA
TTGCCCAAGACTTCAAGAGCGACCTTCGTTTCCAGGGCTCGGCCGTTCTG
GCTCTGCAGGAGGCTGCTGAGGCCTACCTTGTTGGTCTGTTTGAAGACAC
CAACCTGTGCGCTATCCACGCCAAGCGTGTTACCATCATGCCCAAGGACA
TCCAGCTGGCCAGGCGCATCCGCGGCGAGCGCTCTTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig119:798750..799187-

>mRNA_D-herbacea_F_contig119.1345.1 ID=mRNA_D-herbacea_F_contig119.1345.1|Name=mRNA_D-herbacea_F_contig119.1345.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=822bp|location=Sequence derived from alignment at D-herbacea_F_contig119:798750..799187- (Desmarestia herbacea DmunF female)
ATGGCTCGCACGAAGCAGACTGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCCACCAAGGCCGCCCGTAAGTCCGCGCCCGCAACCG
GAGGCGTGAAGAAGCCCCACCGCTACAGGCCTGGAACTGTGGCCCTGCGC
GAGATCCGCCGCTACCAGAAGTCCACGGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGTCTCGTGCGCGAGATTGCCCAAGACTTCAAGAGCGACCTTC
GTTTCCAGGGCTCGGCCGTTCTGGCTCTGCAGGAGGCTGCTGAGGCCTAC
CTTGTTGGTCTGTTTGAAGACACCAACCTGTGCGCTATCCACGCCAAGCG
TGTTACCATCATGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGCGGCG
AGCGCTCTTAAATGGCTCGCACGAAGCAGACTGCCCGTAAGTCCACCGGA
GGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCCGCCCGTAAGTCCGC
GCCCGCAACCGGAGGCGTGAAGAAGCCCCACCGCTACAGGCCTGGAACTG
TGGCCCTGCGCGAGATCCGCCGCTACCAGAAGTCCACGGAGCTGCTCATC
CGCAAGCTCCCCTTCCAGCGTCTCGTGCGCGAGATTGCCCAAGACTTCAA
GAGCGACCTTCGTTTCCAGGGCTCGGCCGTTCTGGCTCTGCAGGAGGCTG
CTGAGGCCTACCTTGTTGGTCTGTTTGAAGACACCAACCTGTGCGCTATC
CACGCCAAGCGTGTTACCATCATGCCCAAGGACATCCAGCTGGCCAGGCG
CATCCGCGGCGAGCGCTCTTAA
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