mRNA_D-herbacea_F_contig119.1338.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig119.1338.1 vs. uniprot
Match: D7FRJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ6_ECTSI) HSP 1 Score: 358 bits (920), Expect = 1.730e-114 Identity = 216/458 (47.16%), Postives = 256/458 (55.90%), Query Frame = 1
Query: 142 RDVSAEKENLTWLYNQKALRYGVVFEEIIRQVAVHSERLANLVSKAFKGHHTLLNRLIKVHDAREGELQRLEAQLRTLTGETSRKMHEEEALVEEQQFLENLTRVELRESQALCSSLRVKLKYYGEEVSRLRQTVLENVTDDDIPRSERVHNSLTTDGLSMPAYPKSKSAIALGKKIPKKAHQKSDASIADGVVTILSLSTEKLNMHARHEKDLSRWLSHLSAESSKQTQDMDTLSRLVDGVKFESFLKGISKEGRRASKRTRETQTRPTRLENPSGDDSRPGTGSGGRKRPPKKTKGSKSEMLPLDLRTSVGLTSSPKKIPTLGYMLRTVLDVMLVWSRSLDTVVNLCEKPGGMTEIVIKHFQASRTLRNTSLLHGMESTTNVMLAQFAAGLAHFVDYKRCKVLGDLLGVDDVAKPPPLDHRAAAFLFRLLAQLRTVGVFGEEILKERIVKIMLNKT 1515
+D +++E+LT LYN+KALRYG+VF+E+IRQVAVHS LA LV KAF GHH LL RLIKVHDAREG+LQ+L QD++ L++L+DGV F +FLKGI+KEGR+A +RT+ETQTRPTR + DSRPGTG+GG+KRPPKKTKGSK+E+LPLDLR S+G+ S+PKKIPTLGYMLRTVLD+MLVWSRSLDT +LC+KPGGMTEI IKHFQ LLHGME+TTN+MLAQFAAGL HF DYKRCKVLGDLLGVDD A PP DHR+A FL+R LA+LRTVGVF E+IL+ERI+KI LNKT
Sbjct: 15 KDPESKRESLTHLYNEKALRYGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKL--------------------------------------------------------------------------------------------------------------------------------------------------------------QDLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKK---SDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGMASAPKKIPTLGYMLRTVLDMMLVWSRSLDTPESLCKKPGGMTEIAIKHFQ---------LLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKT 302
BLAST of mRNA_D-herbacea_F_contig119.1338.1 vs. uniprot
Match: A0A6H5KXR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR9_9PHAE) HSP 1 Score: 273 bits (697), Expect = 5.050e-82 Identity = 152/253 (60.08%), Postives = 175/253 (69.17%), Query Frame = 1
Query: 898 KEGRRASKRTRETQTRPTRLENPSGDDSRPGTGSGGRKRPPKKTKGSKSEMLPLDLRTSVGLTSSPKKIPTLGYMLRTVLDVMLVWSRSLDTVVNLCEKPGGMTEIVIKHFQA-------SRTLRNT-----------------------------------------SLLHGMESTTNVMLAQFAAGLAHFVDYKRCKVLGDLLGVDDVAKPPPLDHRAAAFLFRLLAQLRTVGVFGEEILKERIVKIMLNK 1512
+EGR+A +RT+ETQTRP R + DSRPGTG+GG+KRPPKKTKGSK+E+LPLDLR S+G+ S+PKKIPTLGYMLRTVLD+MLVWSRSLDT +LC+KPGGMTEI IKHFQ T R+T LLHGME+TTN+MLAQFAAGL HF DYKRCKVLGDLLGVDD PP DHR+A FL+R LA+LRTVGVF E+IL+ERI KI LNK
Sbjct: 7 REGRKAMRRTKETQTRPMRDKK---SDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGMASAPKKIPTLGYMLRTVLDMMLVWSRSLDTAESLCQKPGGMTEIAIKHFQVFPNTSDIETTPRSTRWYMRTTCAVYCTNFKEHGIGAAPIDRSSRSRRCVLDFLCFQLLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPTTGPPFDHRSALFLYRFLAELRTVGVFSEDILRERITKINLNK 256
BLAST of mRNA_D-herbacea_F_contig119.1338.1 vs. uniprot
Match: A0A6H5KW65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW65_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.670e-23 Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 142 RDVSAEKENLTWLYNQKALRYGVVFEEIIRQVAVHSERLANLVSKAFKGHHTLLNRLIKVHDAREGELQRLE 357
+D+ +++E+LT LYN+KALRYG+VF+E+IRQVAVHS LA LV KAF GHH LL RLIKVHDAREG+LQ+L+
Sbjct: 24 KDLESKRESLTHLYNEKALRYGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ 95
BLAST of mRNA_D-herbacea_F_contig119.1338.1 vs. uniprot
Match: A0A8J2SLH7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLH7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.990e-16 Identity = 135/588 (22.96%), Postives = 249/588 (42.35%), Query Frame = 1
Query: 199 RYGVVFEEIIRQVAVHSERLANLVSKAFKGHHTLLNRLI----KVHDAREGELQRLEAQLRTLTGETSRKMHEEEALVEEQQFLENLTRVELRESQALCSSLRVKLKYYGEEVSRLRQTV---LENVTDD-----DIPRSERVHNSLTTDGLSMPAYPKSKSAIALGKKIPKKAHQKSDASIADGVVTILSLSTEKLNMHARHEKDLSRWLSHLSAESSKQTQDMDTLSRLVDGVKFESFLKGISKEGRRASKRTRETQTRPTRLENPSGDDSRPGTGSGGRKRPPKKTKGSKSEMLPLDLRTSVGLTSSPKKIPTLGYMLRTVLDVMLVWSRSLDTVVNLCEKPGGMTEIVIKHFQASRTLRNTSLLHGMESTTNVMLAQFAAGLAHFVDY-KRCKVLGDLLGVDDVAKPPPLDHRAAAFLFRLLAQLRTVGVFGEEILKERIVKIMLNKTKCARAARAILGPLLP-QGSPPVTTLIPCLQDANMTSSRRTGPGMKRLTAGTGEVPLAKQMVEFDDLLPEAMAAHAVVMKHRVSHIQLAFQRYCSTFQVTEEMRFGTDDAPKCRDAVVMQ--LSKQLVEQRERRPLY 1914
R+ VFEE+ RQV VHS +L+ L+ K + G L+ +L KVHD + + + L ++ + + E + + ++ +++ LRE +A C+S + ++ EE+ LR+ V +E DD + ++ER+ D + AYP +A +++ K Q + D V IL+ + +DL+ ++ + + + ++ + V + I EG R +K P +E P+ + +PL LR + ++IP+L LR +L + L D + + K + + F L+ G+++ + Q A +A+ D KR ++ G+ LG+ D A+PP R F+F +L LR F E +L+++ +I +N+ K RA P+LP QG+ L+ +Q+ S R + ++ DDLL A ++ +H++ + R+ + ++V EEMRF D+ +D +++Q +K + RRPLY
Sbjct: 68 RHAAVFEELRRQVRVHSPQLSKLLGKVWLGEDELVKKLCVEADKVHDT----IVSSQKERSELIKQSKKALSIVERQLADVKYELAVSKATLREREAECASNKSLVESLNEELGALREQVGKYVEGHVDDIGDRYEALKAERMKLMTEEDPATGEAYP-----LAEIERLAKNRLQ-GVFEMNDEVDEILAKCQRSHDSLKHGLRDLTGLVASVDPDDFRVSKSYKLKKKPSTDVGCQHVT--IKVEGVRVNK-----SLPPPVVEEPA----------------------EEGLTMPLLLRKQMCEFPPSQRIPSLQATLRLILSLYLE-KLMYDKLCDANHK----RRVELGAFPHKYLLKK----FGLQNLADEQCTQLVAAVAYHKDESKRVRLFGEYLGMGDFARPPVYGVRDGNFVFGILVALRKANEFTEAVLQDKDQQIDINRKKAVDVMRACFKPILPDQGA----KLLHRVQNLPPPSVSRN-----------------PKCIDLDDLLELTHNTWATTSRNWRTHLEFLYARHANLYRVKEEMRFANDNGILSQDVILVQEERAKNYTLRDARRPLY 586 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig119.1338.1 >prot_D-herbacea_F_contig119.1338.1 ID=prot_D-herbacea_F_contig119.1338.1|Name=mRNA_D-herbacea_F_contig119.1338.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=785bp MAYLEQWMVEMLDLHRDSAGKPLVDGSGNERMQGGRISRDVSAEKENLTWback to top mRNA from alignment at D-herbacea_F_contig119:638486..656703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig119.1338.1 ID=mRNA_D-herbacea_F_contig119.1338.1|Name=mRNA_D-herbacea_F_contig119.1338.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=18218bp|location=Sequence derived from alignment at D-herbacea_F_contig119:638486..656703+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig119:638486..656703+ >mRNA_D-herbacea_F_contig119.1338.1 ID=mRNA_D-herbacea_F_contig119.1338.1|Name=mRNA_D-herbacea_F_contig119.1338.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4710bp|location=Sequence derived from alignment at D-herbacea_F_contig119:638486..656703+ (Desmarestia herbacea DmunF female)back to top |